Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.26508/lsa.202000757

https://doi.org/10.26508/lsa.202000757

multicrispr: gRNA design for prime editing and parallel targeting of thousands of targets

Cited by: 16
Author(s): Aditya Bhagwat, Johannes Graumann, René Wiegandt, Mette Bentsen, Jordan M. Welker, Carsten Kuenne, Jens Preussner, Thomas Braun, Mario Looso
Published: about 4 years ago

Software Mentions 9

bioconductor: AnnotationHub
Client to access AnnotationHub resources
Papers that mentioned: 39
bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs
Papers that mentioned: 47
bioconductor: CRISPRseek
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
Papers that mentioned: 18
bioconductor: multicrispr
Multi-locus multi-purpose Crispr/Cas design
Papers that mentioned: 2
cran: BiocManager
Access the Bioconductor Project Package Repository
Papers that mentioned: 35
cran: reticulate
Interface to 'Python'
Papers that mentioned: 10
pypi: CCTop
CRISPR/Cas Target online predictor
Papers that mentioned: 98
pypi: learn
A simple printer of nested lines
Papers that mentioned: 154