pypi: CCTop | Projects | Ecosyste.ms: Papers

10.3389/fonc.2020.584404

In silico Method in CRISPR/Cas System: An Expedite and Powerful Booster
Cited by: 6
Author(s): Yuwei Zhang, Guofang Zhao, Fatma Ahmed, Tianfei Yi, Shiyun Hu, Ting Cai, Qi Liao
Software Mentions: 11
Published: about 4 years ago

10.26508/lsa.202000757

multicrispr: gRNA design for prime editing and parallel targeting of thousands of targets
Cited by: 16
Author(s): Aditya Bhagwat, Johannes Graumann, René Wiegandt, Mette Bentsen, Jordan M. Welker, Carsten Kuenne, Jens Preussner, Thomas Braun, Mario Looso
Software Mentions: 9
Published: about 4 years ago

10.1371/journal.pone.0181943

CRISPRpred: A flexible and efficient tool for sgRNAs on-target activity prediction in CRISPR/Cas9 systems
Cited by: 63
Author(s): Md. Khaledur Rahman, Mahfuzur Rahman
Software Mentions: 7
Published: over 7 years ago

10.3390/cells9051288

Computational Tools and Resources Supporting CRISPR-Cas Experiments
Cited by: 34
Author(s): Paweł Śledziński, Mateusz Nowaczyk, Marta Olejniczak
Software Mentions: 5
Published: over 4 years ago

10.7554/eLife.21476

Variation in olfactory neuron repertoires is genetically controlled and environmentally modulated
Cited by: 67
Author(s): Ximena Ibarra-Soria, Thiago S. Nakahara, Jingtao Lilue, Yue Jiang, Casey Trimmer, Mateus A.A. Souza, Paulo H.M. Netto, Kentaro Ikegami, Nicolle R. Murphy, Mairi Kusma, Andrea Kirton, Luís R. Saraiva, Thomas Keane, Hiroaki Matsunami, Joel D. Mainland, Fábio Papes, Darren W. Logan
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-021-81297-2

CROP: a CRISPR/Cas9 guide selection program based on mapping guide variants
Cited by: 3
Author(s): Victor Aprilyanto, Redi Aditama, Zulfikar Achmad Tanjung, Condro Utomo, Tony Liwang
Software Mentions: 5
Published: almost 4 years ago

10.1016/j.celrep.2018.10.072

Heart Regeneration in the Mexican Cavefish
Cited by: 78
Author(s): William T. Stockdale, Madeleine E. Lemieux, Abigail C. Killen, Juanjuan Zhao, Zhilian Hu, Joey Riepsaame, Noémie Hamilton, Tetsuhiro Kudoh, Paul R. Riley, Ronny van Aerle, Yoshiyuki Yamamoto, Mathilda T.M. Mommersteeg
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pbio.3000919

Design of novel granulopoietic proteins by topological rescaffolding
Cited by: 6
Author(s): Birte Hernandez Alvarez, Julia Skokowa, Murray Coles, Perihan Mir, Masoud Nasri, Kateryna Maksymenko, Laura Weidmann, Katherine W. Rogers, Karl Welte, Andrei N. Lupas, Patrick Müller, Mohammad ElGamacy
Software Mentions: 4
Published: almost 4 years ago

10.1002/advs.201902312

CRISPR/Cas Systems in Genome Editing: Methodologies and Tools for sgRNA Design, Off‐Target Evaluation, and Strategies to Mitigate Off‐Target Effects
Cited by: 136
Author(s): Hakim Manghwar, Bo Li, Xiao Ding, Amjad Hussain, Keith Lindsey, Xianlong Zhang, Shuangxia Jin
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1007123

Unlinking the methylome pattern from nucleotide sequence, revealed by large-scale in vivo genome engineering and methylome editing in medaka fish
Cited by: 4
Author(s): Napo K. M. Cheung, Ryohei Nakamura, Ayako Uno, Masahiko Kumagai, Harumi Fukushima, Shinichi Morishita, Hiroyuki Takeda
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pgen.1008464

CRISPR editing of sftb-1/SF3B1 in Caenorhabditis elegans allows the identification of synthetic interactions with cancer-related mutations and the chemical inhibition of splicing
Cited by: 13
Author(s): Xènia Serrat, Dmytro Kukhtar, Eric Cornes, Anna Esteve‐Codina, Helena Benlloch, Germano Cecere, Julián Cerón
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-39142-0

Unlocking HDR-mediated nucleotide editing by identifying high-efficiency target sites using machine learning
Cited by: 30
Author(s): Aidan O’Brien, Laurence O.W. Wilson, Gaétan Burgio, Denis C. Bauer
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-016-1012-2

Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR
Cited by: 1,224
Author(s): Maximilian Haeussler, Kai Shi, Hélène Eckert, Alexis Eschstruth, Joffrey Mianné, Jean Renaud, Sylvie Schneider‐Maunoury, Alena Shkumatava, Lydia Teboul, J. H. Kent, Jean‐Stéphane Joly, Jean‐Paul Concordet
Software Mentions: 3
Published: over 8 years ago

10.1007/s00418-020-01887-5

Pcdh18a regulates endocytosis of E-cadherin during axial mesoderm development in zebrafish
Cited by: 6
Author(s): Bernadett Bösze, Yuzo Ono, Benjamin Mattes, Claude Sinner, Victor Gourain, Thomas Thumberger, Sham Tlili, Joachim Wittbrodt, Timothy E. Saunders, Uwe Strähle, Alexander Schug, Steffen Scholpp
Software Mentions: 3
Published: over 4 years ago

10.1007/s00253-019-10021-y

A deletion in the STA1 promoter determines maltotriose and starch utilization in STA1+ Saccharomyces cerevisiae strains
Cited by: 29
Author(s): Kristoffer Krogerus, Frederico Magalhães, Joosu Kuivanen, Brian Gibson
Software Mentions: 3
Published: over 5 years ago

10.3390/plants9050591

Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era
Cited by: 20
Author(s): Luca Ambrosino, Chiara Colantuono, Gianfranco Diretto, Alessia Fiore, Maria Luisa Chiusano
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0124633

CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool
Cited by: 762
Author(s): Manuel Stemmer, Thomas Thumberger, Maria del Sol Keyer, Joachim Wittbrodt, Juan L. Mateo
Software Mentions: 3
Published: over 9 years ago

10.3390/cells9071608

Latest Developed Strategies to Minimize the Off-Target Effects in CRISPR-Cas-Mediated Genome Editing
Cited by: 218
Author(s): Muhammad Naeem, Saman Majeed, Mubasher Zahir Hoque, Irshad Ahmad
Software Mentions: 3
Published: over 4 years ago

10.7554/eLife.52962

A complex regulatory landscape involved in the development of mammalian external genitals
Cited by: 23
Author(s): Ana Rita Amândio, Lucille Lopez-Delisle, Christopher Chase Bolt, Bénédicte Mascrez, Denis Duboule
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1007274

A benchmark of computational CRISPR-Cas9 guide design methods
Cited by: 23
Author(s): Jacob Bradford, Dimitri Perrin
Software Mentions: 3
Published: about 5 years ago

10.15252/embr.202050287

Scaf1 promotes respiratory supercomplexes and metabolic efficiency in zebrafish
Cited by: 40
Author(s): Carolina García-Poyatos, Sara Cogliati, Enrique Calvo, Pablo Hernansanz-Agustín, Sandrine Lagarrigue, Ricardo Magni, Marius Botos, Xavier Langa, Francesca Amati, Jesús Vázquez, Nadia Mercader, José Antonio Enríquez
Software Mentions: 3
Published: over 4 years ago

10.3389/fbioe.2020.00711

Development and Application of CRISPR/Cas in Microbial Biotechnology
Cited by: 36
Author(s): Wentao Ding, Zhipeng Yang, Shuobo Shi
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms22010396

First Report of CRISPR/Cas9 Mediated DNA-Free Editing of 4CL and RVE7 Genes in Chickpea Protoplasts
Cited by: 75
Author(s): Sapna Badhan, Andrew S. Ball, Nitin Mantri
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12859-019-3151-4

Prediction of sgRNA on-target activity in bacteria by deep learning
Cited by: 19
Author(s): Lei Wang, Juhua Zhang
Software Mentions: 2
Published: about 5 years ago

10.1002/jbm4.10409

Macrophages Switch to an Osteo‐Modulatory Profile Upon RANKL Induction in a Medaka (<scp>Oryzias latipes</scp>) Osteoporosis Model
Cited by: 6
Author(s): Quang Tien Phan, Ranran Liu, Wen Hui Tan, Nurgul Imangali, Benedict Cheong, Manfred Schartl, Christoph Winkler
Software Mentions: 2
Published: about 4 years ago

10.1186/s13072-019-0291-8

Identification of a pituitary ERα-activated enhancer triggering the expression of Nr5a1, the earliest gonadotrope lineage-specific transcription factor
Cited by: 12
Author(s): Vincent Pacini, Florence Petit, Bruno Quérat, Jean-Noël Laverrière, Joëlle Cohen‐Tannoudji, David L’Hôte
Software Mentions: 2
Published: about 5 years ago

10.3390/data2010005

Learning Parsimonious Classification Rules from Gene Expression Data Using Bayesian Networks with Local Structure
Cited by: 6
Author(s): Jonathan Lyle Lustgarten, Jeya Balaji Balasubramanian, Shyam Visweswaran, Vanathi Gopalakrishnan
Software Mentions: 2
Published: almost 8 years ago

10.1186/s13059-019-1776-2

Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation
Cited by: 62
Author(s): Channabasavaiah B. Gurumurthy, Aidan O’Brien, Rolen M. Quadros, John Adams, Pilar Alcaide, Shin-ichi Ayabe, Johnathan Ballard, Surinder K. Batra, Marie-Ève Beauchamp, Kathleen A. Becker, Guillaume Bernas, David Brough, Francisco Carrillo‐Salinas, Wesley Chan, Hanying Chen, Ruby Dawson, Victoria DeMambro, Jinke D’Hont, Katharine M. Dibb, James D. Eudy, Lin Gan, Jing Gao, Amy Gonzales, Anyonya R. Guntur, Hongqian Guo, Donald W. Harms, Anne Harrington, Kathryn E. Hentges, Neil Humphreys, Shiho Imai, Hideshi Ishii, Mizuho Iwama, Eric Jonasch, Michelle Karolak, Bernard Keavney, Nay Chi Khin, Masamitsu Konno, Yuko Kotani, Yayoi Kunihiro, Imayavaramban Lakshmanan, Catherine Larochelle, Catherine B. Lawrence, Lin Li, Volkhard Lindner, Xian De Liu, Gloria López-Castejón, A. S. I. Loudon, Jenna Lowe, Loydie A. Jerome-Majewska, Taiji Matsusaka, Hiromi Miura, Yoshiki Miyasaka, Benjamin Morpurgo, Katherine J. Motyl, Yo Ichi Nabeshima, Koji Nakade, Toshiaki Nakashiba, Ken‐ichi Nakashima, Yuichi Obata, Sanae Ogiwara, Mario Ouellet, Leif Oxburgh, Sandra Piltz, Ilka Pinz, Moorthy P. Ponnusamy, David Ray, Ronald Redder, Clifford J. Rosen, Nikki Ross, Mark T. Ruhe, Larisa Ryzhova, Ane M. Salvador, Sabrina Alam, Radislav Sedláček, Karan Sharma, Chad Smith, Katrien Staes, Lora Starrs, Fumihiro Sugiyama, Satoru Takahashi, Tomohiro Tanaka, Andrew W. Trafford, Yoshihiro Uno, Leen Vanhoutte, Frederique Vanrockeghem, Brandon Willis, Christian S Wright, Yuko Yamauchi, Xin Yi, Kazuto Yoshimi, Xuesong Zhang, Yu Zhang, Masato Ohtsuka, Satyabrata Das, Daniel J. Garry, Tino Hochepied, Paul Q. Thomas, Jan Parker-Thornburg, Antony Adamson, Atsushi Yoshiki, Jean Francois Schmouth, Андрей Головко, William R. Thompson, Kevin C K Lloyd, Joshua A. Wood, Mitra Cowan, Tomoji Mashimo, Seiya Mizuno, Min Zhu, Petr Kašpárek, Lucy Liaw, Joseph M. Miano, Gaétan Burgio
Software Mentions: 2
Published: about 5 years ago

10.1186/s13059-018-1534-x

CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parameters
Cited by: 94
Author(s): Ferhat Alkan, Anne Wenzel, Christian Anthon, Jakob Hull Havgaard, Jan Gorodkin
Software Mentions: 2
Published: about 6 years ago

10.1186/s13059-015-0823-x

Resources for the design of CRISPR gene editing experiments
Cited by: 85
Author(s): Daniel B. Graham, David E. Root
Software Mentions: 2
Published: almost 9 years ago

10.3390/ijms21051854

Generation of New Isogenic Models of Huntington’s Disease Using CRISPR-Cas9 Technology
Cited by: 23
Author(s): Magdalena Dąbrowska, Agata Ciołak, Emilia Kozłowska, Agnieszka Fiszer, Marta Olejniczak
Software Mentions: 2
Published: over 4 years ago

10.1186/s13059-018-1459-4

DeepCRISPR: optimized CRISPR guide RNA design by deep learning
Cited by: 258
Author(s): Guohui Chuai, Hanhui Ma, Jifang Yan, Ming Chen, Nanfang Hong, Dongyu Xue, Chi Zhou, Chenyu Zhu, Ke Chen, Bin Duan, Feng Gu, Sheng Qu, De-Shuang Huang, Jia Wei, Qi Liu
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2021.692263

Intracellular Accumulation of IFN-λ4 Induces ER Stress and Results in Anti-Cirrhotic but Pro-HCV Effects
Cited by: 6
Author(s): Olusegun O. Onabajo, Fang Wang, Hsuan-Shu Lee, Óscar Flórez-Vargas, Adeola Obajemu, Chizu Tanikawa, Joselin M. Vargas, Shu-Fen Liao, Ci Song, Yhu‐Chering Huang, Chen Shen, Abdul Rouf Banday, Thomas R. O’Brien, Zhibin Hu, Koichi Matsuda, Ludmila Prokunina–Olsson
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0255470

Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter
Cited by: 10
Author(s): Phuong Nguyen Duy, Dai Tran Lan, Hang Pham Thu, Huong Phung Thi Thu, Hà Nguyễn Thanh, Ngoc Phuong Pham, Florence Auguy, Huong Bui Thi Thu, Tran Bao Manh, Sébastien Cunnac, Xuan Hoi Pham
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0227994

Are the current gRNA ranking prediction algorithms useful for genome editing in plants?
Cited by: 44
Author(s): Narjis Fatima, Kylie Shand, Satomi Hayashi, Martin O’Brien, Louise M Burrell, Alexander Johnson, Benjamin Dugdale, Peter M. Waterhouse
Software Mentions: 2
Published: almost 5 years ago

10.1128/mSphere.00080-21

A Conserved Machinery Underlies the Synthesis of a Chitosan Layer in the Candida Chlamydospore Cell Wall
Cited by: 9
Author(s): Leo D. Bemena, Kyung-Hee Min, James B. Konopka, Aaron M. Neiman
Software Mentions: 2
Published: over 3 years ago

10.1534/g3.119.400130

High-Efficiency CRISPR/Cas9-Mediated Gene Editing in Honeybee (Apis mellifera) Embryos
Cited by: 32
Author(s): Xiaofen Hu, Bo Zhang, Chun Hua Liao, Zhi Zeng
Software Mentions: 1
Published: over 5 years ago

10.1080/21645698.2020.1831729

Engineering disease resistant plants through CRISPR-Cas9 technology
Cited by: 41
Author(s): Swati Tyagi, Robin Kumar, Virendra Kumar, So Youn Won, Pratyoosh Shukla
Software Mentions: 1
Published: about 4 years ago

10.1038/s41438-020-00363-4

Tomato fruit as a model for tissue-specific gene silencing in crop plants
Cited by: 15
Author(s): Ari Feder, Jensen Se, Anquan Wang, Lance Courtney, Lesley Middleton, Joyce Van Eck, Yongsheng Liu, James Giovannoni
Software Mentions: 1
Published: about 4 years ago

10.3390/insects12090832

Precise Characterization of Bombyx mori Fibroin Heavy Chain Gene Using Cpf1-Based Enrichment and Oxford Nanopore Technologies
Cited by: 2
Author(s): Wei Lu, Xinhui Lan, Tong Zhang, Hao Sun, Sanyuan Ma, Qingyou Xia
Software Mentions: 1
Published: about 3 years ago

10.1111/jcmm.14669

Efficient gene correction of an aberrant splice site in β‐thalassaemia iPSCs by CRISPR/Cas9 and single‐strand oligodeoxynucleotides
Cited by: 12
Author(s): Zhenzhen Xiong, Yuan Xie, Yi Yang, Yingwei Xue, Ding Wang, Siming Lin, Di-Yu Chen, Di Lü, Lina He, Bing Song, Yinghong Yang, Xiaofang Sun
Software Mentions: 1
Published: about 5 years ago

10.1038/srep16595

Differentiation of human ESCs to retinal ganglion cells using a CRISPR engineered reporter cell line
Cited by: 132
Author(s): Valentin M. Sluch, Chung Ha O. Davis, Vinod Ranganathan, Justin M. Kerr, Kellin Krick, Russ Martin, Cynthia Berlinicke, Nicholas Marsh-Armstrong, Jeffrey S. Diamond, Hai‐Quan Mao, Donald J. Zack
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep35264

CRISPR/Cas9 mediated knockout of rb1 and rbl1 leads to rapid and penetrant retinoblastoma development in Xenopus tropicalis
Cited by: 59
Author(s): Thomas Naert, Robin M.W. Colpaert, Tom Van Nieuwenhuysen, Dionysia Dimitrakopoulou, Jannick Leœn, Jurgen Haustraete, Annekatrien Boel, Wouter Steyaert, Trees Lepez, Dieter Deforce, Andy Willaert, David Creytens, Kris Vleminckx
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-01050-6

Crispr/Cas9 Mediated Inactivation of Argonaute 2 Reveals its Differential Involvement in Antiviral Responses
Cited by: 47
Author(s): Márta Ludman, József Burgyán, Károly Fátyol
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-38526-6

Suppressing the NHEJ pathway by DNA-PKcs inhibitor NU7026 prevents degradation of HBV cccDNA cleaved by CRISPR/Cas9
Cited by: 34
Author(s): Dmitry Kostyushev, Anastasiya Kostyusheva, Sergey Brezgin, Dmitry Zarifyan, Anastasiya Utkina, Irina A. Goptar, Vladimir Chulanov
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-45859-9

CRISPR/Cas9 mediated generation of an ovine model for infantile neuronal ceroid lipofuscinosis (CLN1 disease)
Cited by: 37
Author(s): Sally L. Eaton, Christopher Proudfoot, Simon Lillico, Paul Skehel, Ronald A. Kline, Kim Hamer, Nina Marie Rzechorzek, Eddie Clutton, Rachael Gregson, Tim King, Charles O’Neill, Jonathan D. Cooper, Gerard Thompson, C. Bruce A. Whitelaw, Thomas M. Wishart
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-74772-9

Abrogation of HLA surface expression using CRISPR/Cas9 genome editing: a step toward universal T cell therapy
Cited by: 23
Author(s): Jeewon Lee, Joong Hyuk Sheen, Okjae Lim, Yun‐Jung Lee, Jihye Ryu, Duckhyang Shin, Yu Young Kim, Munkyung Kim
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-80864-3

CRISPR-based transcriptional activation tool for silent genes in filamentous fungi
Cited by: 21
Author(s): László Mózsik, Mirthe Hoekzema, Niels A. W. de Kok, Roel A. L. Bovenberg, Yvonne Nygård, Arnold J.M. Driessen
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-94229-x

Efficient gene transfer into zebra finch germline-competent stem cells using an adenoviral vector system
Cited by: 7
Author(s): Kyung Min Jung, Young Min Kim, Jin Lee Kim, Jae Yong Han
Software Mentions: 1
Published: over 3 years ago

10.1038/s41398-018-0177-8

Single-cell trajectory analysis of human homogenous neurons carrying a rare RELN variant
Cited by: 27
Author(s): Yuko Arioka, Emiko Shishido, Hisako Kubo, Itaru Kushima, Akira Yoshimi, Hiroki Kimura, Kanako Ishizuka, Branko Aleksić, Takuji Maeda, Mitsuru Ishikawa, Naoko Kuzumaki, Hideyuki Okano, Daisuke Mori, Norio Ozaki
Software Mentions: 1
Published: over 6 years ago

10.1128/mSphere.00086-20

A Universal, Genomewide GuideFinder for CRISPR/Cas9 Targeting in Microbial Genomes
Cited by: 12
Author(s): Michelle Spoto, Changhui Guan, Elizabeth Fleming, Julia Oh
Software Mentions: 1
Published: over 4 years ago

10.1007/s00439-016-1739-6

CRISPR/Cas9 in zebrafish: an efficient combination for human genetic diseases modeling
Cited by: 72
Author(s): Jiaqi Liu, Yangzhong Zhou, Xiaolong Qi, Jia Chen, Weisheng Chen, Guixing Qiu, Zhihong Wu, Nan Wu
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.29173

Neural stem cells induce the formation of their physical niche during organogenesis
Cited by: 28
Author(s): Ali Seleit, Isabel Krämer, Bea F Riebesehl, Elizabeth Mayela Ambrosio, Julian Stolper, Colin Lischik, Nicolas Dross, Lázaro Centanin
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.64434

Dyshomeostatic modulation of Ca2+-activated K+ channels in a human neuronal model of KCNQ2 encephalopathy
Cited by: 19
Author(s): D. J. Simkin, Kelly A Marshall, Carlos G. Vanoye, Reshma R. Desai, Bernabé I. Bustos, Brandon N Piyevsky, Joaquı́n M. Ortega, Marc P. Forrest, Gabriella L. Robertson, Peter Penzes, Linda Laux, Steven Lubbe, J Millichap, Alfred L. George, Evangelos Kiskinis
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.42646

Retinal stem cells modulate proliferative parameters to coordinate post-embryonic morphogenesis in the eye of fish
Cited by: 19
Author(s): Erika Tsingos, Burkhard Höckendorf, Thomas Sütterlin, Stephan Kirchmaier, Niels Grabe, Lázaro Centanin, Joachim Wittbrodt
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.34616

Decoupling from yolk sac is required for extraembryonic tissue spreading in the scuttle fly Megaselia abdita
Cited by: 14
Author(s): Francesca Caroti, Everardo González Avalos, Viola Noeske, Paula González Avalos, Dimitri Kromm, Maike Wosch, Lucas Schütz, Lars Hufnagel, Steffen Lemke
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.41873

A Y-chromosome shredding gene drive for controlling pest vertebrate populations
Cited by: 41
Author(s): Thomas A. A. Prowse, Fatwa Adikusuma, Phillip Cassey, Paul Q. Thomas, Joshua V. Ross
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms19041089

Applications of CRISPR/Cas System to Bacterial Metabolic Engineering
Cited by: 96
Author(s): Suhyung Cho, Jisoo Shin, Byung-Kwan Cho
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21186865

Clearing of Foreign Episomal DNA from Human Cells by CRISPRa-Mediated Activation of Cytidine Deaminases
Cited by: 4
Author(s): Sergey Brezgin, Anastasiya Kostyusheva, Н. И. Пономарева, Viktoriia Volia, Irina A. Goptar, A. V. Nikiforova, Igor Shilovskiy, В. В. Смирнов, Dmitry Kostyushev, Vladimir Chulanov
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms22179411

A Multiplex CRISPR-Screen Identifies PLA2G4A as Prognostic Marker and Druggable Target for HOXA9 and MEIS1 Dependent AML
Cited by: 9
Author(s): Jacob Jalil Hassan, Anna Lieske, Nicole Dörpmund, Denise Klatt, Dirk Hoffmann, Marc-Jens Kleppa, Olga Kustikova, Maike Stahlhut, Adrian Schwarzer, Axel Schambach, Tobias Maetzig
Software Mentions: 1
Published: about 3 years ago

10.3390/ijms221910535

Fab Advances in Fabaceae for Abiotic Stress Resilience: From ‘Omics’ to Artificial Intelligence
Cited by: 7
Author(s): Dharmendra Singh, Priya Chaudhary, Jyoti Taunk, Chandan Kumar Singh, Deepti Singh, R. S. Tomar, Muraleedhar S. Aski, Noren Singh Konjengbam, Ranjeet Sharan Raje, Sanjay Singh, R. S. Sengar, Rajendra Kumar Yadav, Madan Pal
Software Mentions: 1
Published: about 3 years ago

10.1186/s13568-019-0884-4

Multiple integration of the gene ganA into the Bacillus subtilis chromosome for enhanced β-galactosidase production using the CRISPR/Cas9 system
Cited by: 20
Author(s): Hildegard Watzlawick, Josef Altenbuchner
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.17154

CRISPR/Cas9-mediated ApoE-/- and LDLR-/- double gene knockout in pigs elevates serum LDL-C and TC levels
Cited by: 53
Author(s): Lei Huang, Zhen Hua, Hong‐Wei Xiao, Ying Cheng, Kui Xu, Qian Gao, Ying Xia, Yang Liu, Xue Zhang, Xiao Zheng, Yulian Mu, Kui Li
Software Mentions: 1
Published: over 7 years ago

10.1186/s12915-020-00929-7

A Cas9-mediated adenosine transient reporter enables enrichment of ABE-targeted cells
Cited by: 9
Author(s): Nicholas Brookhouser, Toan Nguyen, Stefan J. Tekel, Kylie Standage-Beier, Xiao Wang, David A. Brafman
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12870-020-02497-y

CRISPR/Cas9-targeted mutagenesis of the tomato susceptibility gene PMR4 for resistance against powdery mildew
Cited by: 88
Author(s): Miguel I. Santillán Martínez, Valentina Bracuto, Eleni Koseoglou, Michela Appiano, E. Jacobsen, Richard G. F. Visser, Anne‐Marie A. Wolters, Yuling Bai
Software Mentions: 1
Published: over 4 years ago

10.1186/s12870-019-1906-8

Demonstration of highly efficient dual gRNA CRISPR/Cas9 editing of the homeologous GmFAD2–1A and GmFAD2–1B genes to yield a high oleic, low linoleic and α-linolenic acid phenotype in soybean
Cited by: 119
Author(s): Phat Tien, Cuong Xuan Nguyen, Hien Thuy Bui, L.T. Tran, Gary Stacey, Jason D. Gillman, Zhanyuan J. Zhang, Minviluz G. Stacey
Software Mentions: 1
Published: over 5 years ago

10.1242/bio.035170

Efficient genome editing using CRISPR/Cas9 ribonucleoprotein approach in cultured medaka fish cells
Cited by: 12
Author(s): Qizhi Liu, Yusheng Yuan, Feng Zhu, Yunhan Hong, Ruowen Ge
Software Mentions: 1
Published: almost 7 years ago

10.3390/biom9040136

CRISPR/Cas9-Mediated Knock-Out of dUTPase in Mice Leads to Early Embryonic Lethality
Cited by: 9
Author(s): Hajnalka Laura Pálinkás, Gergely Rácz, Zoltán Gál, Orsolya Ivett Hoffmann, Gergely Tihanyi, Gergely Róna, Elen Gócza, László Hiripi, Beáta G. Vértessy
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms8060935

Antibiotic Resistance Profiles, Molecular Mechanisms and Innovative Treatment Strategies of Acinetobacter baumannii
Cited by: 90
Author(s): Corneliu Ovidiu Vrâncianu, Irina Gheorghe, Ilda Czobor, Mariana Carmen Chifiriuc
Software Mentions: 1
Published: over 4 years ago

10.1111/mpp.12417

Engineering of CRISPR/Cas9-mediated potyvirus resistance in transgene-freeArabidopsisplants
Cited by: 291
Author(s): Douglas E. Pyott, Emma Sheehan, Attila Molnár
Software Mentions: 1
Published: over 8 years ago

10.1016/j.omtm.2021.01.001

Non-viral ex vivo genome-editing in mouse bona fide hematopoietic stem cells with CRISPR/Cas9
Cited by: 5
Author(s): Suvd Byambaa, Hideki Uosaki, Tsukasa Ohmori, Hiromasa Hara, Hitoshi Endo, Osamu Nureki, Yutaka Hanazono
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pbio.3000850

Notch dimerization and gene dosage are important for normal heart development, intestinal stem cell maintenance, and splenic marginal zone B-cell homeostasis during mite infestation
Cited by: 9
Author(s): Francis M. Kobia, Kristina Preuße, Quanhui Dai, Nicholas Weaver, Matthew R. Hass, Praneet Chaturvedi, Sarah Stein, Warren S. Pear, Zhenyu Yuan, Rhett A. Kovall, Yi Kuang, Natanel Eafergen, David Sprinzak, Brian Gebelein, Eric W. Brunskill, Raphael Kopan
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pbio.2004404

Hair cell identity establishes labeled lines of directional mechanosensation
Cited by: 16
Author(s): Marta Lozano-Ortega, Gema Valera, Yan Xiao, Adèle Faucherre, Hernán López‐Schier
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1005807

A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action
Cited by: 133
Author(s): Shiran Abadi, Wang‐Ji Yan, David Amar, Itay Mayrose
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0201683

Highly efficient scarless knock-in of reporter genes into human and mouse pluripotent stem cells via transient antibiotic selection
Cited by: 13
Author(s): Valentin M. Sluch, Xitiz Chamling, Claire Wenger, Yun-you Duan, Dennis S. Rice, Donald J. Zack
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0176619

Correction: CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool
Cited by: 23
Author(s): Manuel Stemmer, Thomas Thumberger, Maria del Sol Keyer, Joachim Wittbrodt, Juan L. Mateo
Software Mentions: 1
Published: over 7 years ago

10.1186/s13578-020-00444-w

Genome editing of CCR5 by AsCpf1 renders CD4+T cells resistance to HIV-1 infection
Cited by: 16
Author(s): Zhepeng Liu, Jin Liang, Shuliang Chen, Kewu Wang, Xianhao Liu, Beibei Liu, Yang Xia, Mingxiong Guo, Xiaoshi Zhang, Guihong Sun, Geng Tian
Software Mentions: 1
Published: over 4 years ago

10.1038/s41419-017-0246-6

Long noncoding RNA PANDAR blocks CDKN1A gene transcription by competitive interaction with p53 protein in gastric cancer
Cited by: 59
Author(s): Jun Li, Qiwen Ben, Eryi Lu, Xiangyi He, Xiaoqun Yang, Jun Ma, Wen Zhang, Zhiming Wang, Tianshu Liu, Jianjun Zhang, Hongxia Wang
Software Mentions: 1
Published: over 6 years ago

10.3390/cells9051095

Genome Editing of the SNAI1 Gene in Rhabdomyosarcoma: A Novel Model for Studies of Its Role
Cited by: 5
Author(s): Aleksandra Ulman, Klaudia Skrzypek, Paweł Konieczny, Claudio Mussolino, Toni Cathomen, Marcin Majka
Software Mentions: 1
Published: over 4 years ago

10.1242/dev.142752

Sequential organogenesis sets two parallel sensory lines in medaka
Cited by: 15
Author(s): Ali Seleit, Isabel Krämer, Elizabeth Mayela Ambrosio, Nicolas Dross, Ulrike Engel, Lázaro Centanin
Software Mentions: 1
Published: almost 8 years ago

10.1242/dev.145839

Cas9-mediated excision ofNematostella brachyurydisrupts endoderm development, pharynx formation, and oral-aboral patterning
Cited by: 31
Author(s): Marc Servetnick, Bailey Steinworth, Leslie S. Babonis, David Simmons, Miguel Salinas‐Saavedra, Mark Q. Martindale
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13072-017-0129-1

Stabilization of Foxp3 expression by CRISPR-dCas9-based epigenome editing in mouse primary T cells
Cited by: 89
Author(s): Masahiro Okada, Mitsuhiro Kanamori, Kazue Someya, Hiroko Nakatsukasa, Akihiko Yoshimura
Software Mentions: 1
Published: over 7 years ago

10.12688/f1000research.13441.2

DNA sequence features in the establishing of H3K27ac
Cited by: 2
Author(s): Anatoliy Zubritskiy, Yulia A. Medvedeva
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2021.718466

The Off-Targets of Clustered Regularly Interspaced Short Palindromic Repeats Gene Editing
Cited by: 10
Author(s): Manuel M. Vicente, Miguel Chaves-Ferreira, João M. P. Jorge, João T. Proença, Vasco M. Barreto
Software Mentions: 1
Published: about 3 years ago

10.3389/fcell.2021.745195

Breakage of CRISPR/Cas9-Induced Chromosome Bridges in Mitotic Cells
Cited by: 1
Author(s): Marina Rodriguez-Muñoz, Martina Serrat, David Soler, Anna Genescà, Teresa Anglada
Software Mentions: 1
Published: about 3 years ago

10.3389/fncel.2021.647860

npc2-Deficient Zebrafish Reproduce Neurological and Inflammatory Symptoms of Niemann-Pick Type C Disease
Cited by: 7
Author(s): Małgorzata Wiweger, Łukasz Majewski, Dobrochna Adamek‐Urbańska, Iga Wasilewska, Jacek Kuźnicki
Software Mentions: 1
Published: over 3 years ago

10.3389/fncel.2019.00330

Myosin XVI Regulates Actin Cytoskeleton Dynamics in Dendritic Spines of Purkinje Cells and Affects Presynaptic Organization
Cited by: 11
Author(s): Mona K. Roesler, Franco L. Lombino, Sandra Freitag, Michaela Schweizer, Irm Hermans‐Borgmeyer, Jürgen R. Schwarz, Matthias Kneussel, Wolfgang Wagner
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2019.01303

A Novel Hybrid CNN-SVR for CRISPR/Cas9 Guide RNA Activity Prediction
Cited by: 17
Author(s): Guishan Zhang, Zhiming Dai, Xianhua Dai
Software Mentions: 1
Published: almost 5 years ago

10.3389/fgene.2020.601380

Recent Advances in Genetic Tools for Acinetobacter baumannii
Cited by: 9
Author(s): Ellen M. E. Sykes, Soumya Deo, Ayush Kumar
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgeed.2020.598522

CRISPR Turbo Accelerated KnockOut (CRISPy TAKO) for Rapid in vivo Screening of Gene Function
Cited by: 2
Author(s): Sonja L. Plasil, Amit Seth, Gregg E. Homanics
Software Mentions: 1
Published: about 4 years ago

10.3389/fpls.2021.742932

Current Advancements and Limitations of Gene Editing in Orphan Crops
Cited by: 16
Author(s): Matthew Venezia, Kate M. Creasey Krainer
Software Mentions: 1
Published: about 3 years ago

10.3389/fpls.2020.01098

Genome Editing of eIF4E1 in Tomato Confers Resistance to Pepper Mottle Virus
Cited by: 39
Author(s): Yoo Joung Yoon, Jelli Venkatesh, Joung Ho Lee, Jinhee Kim, Hye-Eun Lee, Do Sun Kim, Byoung-Cheorl Kang
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2020.612942

CRISPR/Cas9-Mediated Knockout of Galactinol Synthase-Encoding Genes Reduces Raffinose Family Oligosaccharide Levels in Soybean Seeds
Cited by: 33
Author(s): Huy Duc Le, Nhung H. A. Nguyen, Dong Thị Ta, Thao Nhu Thi Le, Thao Phuong Bui, Ngoc Thu Le, Cuong Xuan Nguyen, Hardy Rolletschek, Gary Stacey, Minviluz G. Stacey, Ngoc Bich Pham, Phat Tien, Ha Hoang Chu
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2020.583374

Turning Up the Temperature on CRISPR: Increased Temperature Can Improve the Editing Efficiency of Wheat Using CRISPR/Cas9
Cited by: 27
Author(s): Matthew J. Milner, Melanie Craze, Matthew S Hope, Emma J. Wallington
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2021.721674

Impairment of Tomato WAT1 Enhances Resistance to Vascular Wilt Fungi Despite Severe Growth Defects
Cited by: 11
Author(s): Katharina Hanika, Danny Schipper, Shravya Chinnappa, Marian Oortwijn, Henk J. Schouten, B.P.H.J. Thomma, Yuling Bai
Software Mentions: 1
Published: about 3 years ago

10.3389/fpls.2017.01469

CRISPR/Cas9: A Practical Approach in Date Palm Genome Editing
Cited by: 30
Author(s): Muhammad Naeem Sattar, Zafar Iqbal, Muhammad Nouman Tahir, Muhammad Shahid, Muhammad Khurshid, Abdullatif A. Al-Khateeb, Muhammad Naeem Sattar
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2020.574959

Which Factors Affect the Occurrence of Off-Target Effects Caused by the Use of CRISPR/Cas: A Systematic Review in Plants
Cited by: 62
Author(s): Dominik Modrzejewski, Frank Hartung, Heike Lehnert, Thorben Sprink, Christian Kohl, Jens Keilwagen, Ralf Wilhelm
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2019.01666

The Major Floral Promoter NtFT5 in Tobacco (Nicotiana tabacum) Is a Promising Target for Crop Improvement
Cited by: 12
Author(s): Florentin J. Schmidt, Marius M Zimmermann, David R. Wiedmann, Sophie Lichtenauer, Lena Grundmann, Jost Muth, Richard M. Twyman, Dirk Prüfer, Gundula A. Noll
Software Mentions: 1
Published: almost 5 years ago

Projects: pypi: CCTop

Papers Mentioning CCTop 98