cran: randomForestSRC | Projects | Ecosyste.ms: Papers

10.3389/fcell.2020.577125

Development of a Metastasis-Related Immune Prognostic Model of Metastatic Colorectal Cancer and Its Usefulness to Immunotherapy
Cited by: 11
Author(s): Zhiwen Luo, Xiao Chen, Yefan Zhang, Zhen Huang, Hong Zhao, Jianjun Zhao, Zhiyu Li, Jianguo Zhou, Jianmei Liu, Jianqiang Cai, Xinyu Bi
Software Mentions: 26
Published: almost 4 years ago

10.3390/ijms21062114

Computational Models Using Multiple Machine Learning Algorithms for Predicting Drug Hepatotoxicity with the DILIrank Dataset
Cited by: 22
Author(s): Robert Ancuceanu, Marilena Viorica Hovaneț, Adriana Iuliana Anghel, Florentina Furtunescu, Monica Neagu, Carolina Constantin, Mihaela Dinu
Software Mentions: 24
Published: over 4 years ago

10.1093/gigascience/giaa026

ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data
Cited by: 13
Author(s): Stephen R. Piccolo, Terry J. Lee, Erica Suh, Kimball T Hill
Software Mentions: 21
Published: over 4 years ago

10.3389/fimmu.2021.698236

Comprehensive Analysis of Clinical Significance, Immune Infiltration and Biological Role of m6A Regulators in Early-Stage Lung Adenocarcinoma
Cited by: 3
Author(s): Bolun Zhou, Shugeng Gao
Software Mentions: 12
Published: about 3 years ago

10.1002/1878-0261.12134

Tissue glycomics distinguish tumour sites in women with advanced serous adenocarcinoma
Cited by: 21
Author(s): Merrina Anugraham, Francis Jacob, Arun Everest‐Dass, Andreas Schoetzau, Sheri Nixdorf, Neville F. Hacker, Daniel Fink, Viola Heinzelmann‐Schwarz, Nicolle H. Packer
Software Mentions: 11
Published: about 7 years ago

10.1186/s12885-021-08498-w

Prediction of the risk of developing hepatocellular carcinoma in health screening examinees: a Korean cohort study
Cited by: 7
Author(s): Chansik An, Jong Won Choi, Hyung Soon Lee, Hyunsun Lim, Seok Jong Ryu, Jung Hyun Chang, Hyun Cheol Oh
Software Mentions: 10
Published: over 3 years ago

10.1186/s13059-016-0999-8

Genomic alterations underlie a pan-cancer metabolic shift associated with tumour hypoxia
Cited by: 64
Author(s): Syed Haider, Alan McIntyre, Ruud G.P.M. van Stiphout, Laura Winchester, Simon Wigfield, Adrian L. Harris, Francesca M. Buffa
Software Mentions: 10
Published: over 8 years ago

10.1001/jamanetworkopen.2021.10703

Comparative Effectiveness of Machine Learning Approaches for Predicting Gastrointestinal Bleeds in Patients Receiving Antithrombotic Treatment
Cited by: 13
Author(s): Jeph Herrin, Neena S. Abraham, Xiaoxi Yao, Peter A. Noseworthy, Jonathan Inselman, Nilay D. Shah, Che Ngufor
Software Mentions: 10
Published: over 3 years ago

10.1155/2021/6657397

Identifying Stage II Colorectal Cancer Recurrence Associated Genes by Microarray Meta-Analysis and Building Predictive Models with Machine Learning Algorithms
Cited by: 2
Author(s): Wei Lu, Xiang Pan, Siqi Dai, Dongliang Fu, Maxwell Hwang, Yaowu Zhu, Lina Zhang, Jingsun Wei, Xianglong Kong, Jun Li, Qian Xiao, Kefeng Ding
Software Mentions: 9
Published: almost 4 years ago

10.1186/s12916-020-01826-0

Development and validation of a lifestyle-based model for colorectal cancer risk prediction: the LiFeCRC score
Cited by: 33
Author(s): Krasimira Aleksandrova, Robin Reichmann, Rudolf Kaaks, Mazda Jenab, H. Bas Bueno-de-Mesquita, Christina C. Dahm, Anne Kirstine Eriksen, Anne Tjønneland, Fanny Artaud, Marie Christine Boutron-Ruault, Gianluca Severi, Anika Hüsing, Antonia Trichopoulou, Anna Karakatsani, Eleni Peppa, Salvatore Panico, Giovanna Masala, Sara Grioni, Carlotta Sacerdote, Rosario Tumino, Sjoerd G. Elias, Anne M. May, Kristin Benjaminsen Borch, Torkjel M. Sandanger, Guri Skeie, María José Sánchez, José María Huerta, Núria Sala, Aurelio Barricarte Gurrea, J. Ramón Quiŕos, Pilar Amiano, Jonna Berntsson, Isabel Drake, Bethany Van Guelpen, Sophia Harlid, Tim Key, Elisabete Weiderpass, Elom K. Aglago, Amanda J. Cross, Konstantinos K. Tsilidis, Elio Riboli, Marc J. Gunter
Software Mentions: 9
Published: almost 4 years ago

10.1186/s40168-020-00873-2

Climate mediates continental scale patterns of stream microbial functional diversity
Cited by: 22
Author(s): Félix Picazo, Annika Vilmi, Juha Aalto, Janne Soininen, Emilio O. Casamayor, Yongqin Liu, Qinglong L. Wu, Lijuan Ren, Jizhong Zhou, Jian Shen, Jianjun Wang
Software Mentions: 9
Published: over 4 years ago

10.7717/peerj.6339

Splitting on categorical predictors in random forests
Cited by: 26
Author(s): Marvin N. Wright, Inke R. König
Software Mentions: 9
Published: almost 6 years ago

10.3389/fonc.2020.00835

Development and Validation of a 12-Gene Immune Relevant Prognostic Signature for Lung Adenocarcinoma Through Machine Learning Strategies
Cited by: 14
Author(s): Xue Li, Guoshu Bi, Cheng Zhan, Yi Zhang, Yunfeng Yuan, Hong Fan
Software Mentions: 8
Published: over 4 years ago

10.3389/fonc.2021.640881

Exploration of an Integrative Prognostic Model of Radiogenomics Features With Underlying Gene Expression Patterns in Clear Cell Renal Cell Carcinoma
Cited by: 10
Author(s): Yeqian Huang, Hao Zeng, Linyan Chen, Yuling Luo, Xuelei Ma, Ye Zhao
Software Mentions: 8
Published: over 3 years ago

10.3389/fmolb.2021.613359

Identification of a Hypoxia-Related Signature for Predicting Prognosis and the Immune Microenvironment in Bladder Cancer
Cited by: 10
Author(s): Minxiao Jiang, Ren Lang, Yuanlei Chen, Huan Wang, Haiyang Wu, Sheng Cheng, Gonghui Li, Shicheng Yu
Software Mentions: 8
Published: over 3 years ago

10.3389/fgene.2021.627508

Integrated Analysis of the Prognosis-Associated RNA-Binding Protein Genes and Candidate Drugs in Renal Papillary Cell Carcinoma
Cited by: 22
Author(s): Shuiping Jiang, Xiaohan Ren, Shouyong Liu, Zhongwen Lü, Aiming Xu, Chao Qin, Zengjun Wang
Software Mentions: 8
Published: almost 4 years ago

10.3390/cancers12102802

Comparison of the Tree-Based Machine Learning Algorithms to Cox Regression in Predicting the Survival of Oral and Pharyngeal Cancers: Analyses Based on SEER Database
Cited by: 31
Author(s): Mi Du, Dandara Haag, John Lynch, Murthy Mittinty
Software Mentions: 8
Published: about 4 years ago

10.1371/journal.pone.0252602

Variation isn’t that hard: Morphosyntactic choice does not predict production difficulty
Cited by: 2
Author(s): Matt Hunt Gardner, Eva Uffing, Nicholas Van Vaeck, Benedikt Szmrecsanyi
Software Mentions: 8
Published: over 3 years ago

10.3390/ijerph17030778

Social Support and Subclinical Coronary Artery Disease in Middle-Aged Men and Women: Findings from the Pilot of Swedish CArdioPulmonary bioImage Study
Cited by: 1
Author(s): Demir Djekic, Erika Fagman, Oskar Angerås, George Lappas, Kjell Torén, Göran Bergström, Annika Rosengren
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-020-80197-1

Pro-inflammatory cytokine polymorphisms and interactions with dietary alcohol and estrogen, risk factors for invasive breast cancer using a post genome-wide analysis for gene–gene and gene–lifestyle interaction
Cited by: 6
Author(s): Su Yon Jung, Jeanette C. Papp, Eric M. Sobel, Matteo Pellegrini, Herbert Yu, Zuo‐Feng Zhang
Software Mentions: 7
Published: almost 4 years ago

10.1186/s12898-018-0187-7

A random survival forest illustrates the importance of natural enemies compared to host plant quality on leaf beetle survival rates
Cited by: 5
Author(s): Thomas A. Verschut, Peter A. Hambäck
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pgen.1008482

A transcriptome-based signature of pathological angiogenesis predicts breast cancer patient survival
Cited by: 12
Author(s): Rodrigo Guarischi-Sousa, Jhonatas Sirino Monteiro, Lilian Costa Alecrim, Jussara S. Michaloski, Laura Beatriz da Silva Cardeal, Elisa Napolitano Ferreira, Dirce Maria Carraro, Diana Noronha Nunes, Emmanuel Dias-Neto, Jüri Reimand, Paul C. Boutros, João Carlos Setúbal, Ricardo J. Giordano
Software Mentions: 7
Published: almost 5 years ago

10.3390/cancers13184559

Machine Learning Incorporating Host Factors for Predicting Survival in Head and Neck Squamous Cell Carcinoma Patients
Cited by: 5
Author(s): Han Yu, Sung Jun, Mark Farrugia, Austin J. Iovoli, Kimberly Wooten, Vishal Gupta, Ryan McSpadden, Moni Abraham Kuriakose, Michael R. Markiewicz, Justin Chan, Wesley L. Hicks, Mary E. Platek, Anurag Singh
Software Mentions: 7
Published: about 3 years ago

10.1371/journal.pone.0187849

Discordance between 'actual' and 'scheduled' check-in times at a heart failure clinic
Cited by: 9
Author(s): Eiran Z. Gorodeski, Emer Joyce, Benjamin Gandesbery, Eugene H. Blackstone, David O. Taylor, W.H. Wilson Tang, Randall C. Starling, Rory Hachamovitch
Software Mentions: 7
Published: about 7 years ago

10.3389/fcell.2021.673838

Construction of a Promising Tumor-Infiltrating CD8+ T Cells Gene Signature to Improve Prediction of the Prognosis and Immune Response of Uveal Melanoma
Cited by: 13
Author(s): Yifang Sun, Jian Wu, Yuchao Yuan, Yumin Lu, Ming Luo, Ling Lin, Shuping Ma
Software Mentions: 7
Published: over 3 years ago

10.1155/2021/6676537

Machine Learning for Building Immune Genetic Model in Hepatocellular Carcinoma Patients
Cited by: 2
Author(s): Jun Liu, Zheng Chen, Wenli Li
Software Mentions: 6
Published: over 3 years ago

10.3390/s20041192

Geomorphometric Methods for Burial Mound Recognition and Extraction from High-Resolution LiDAR DEMs
Cited by: 14
Author(s): Mihai Niculiță
Software Mentions: 6
Published: over 4 years ago

10.1002/ece3.6378

Long‐lived marine species may be resilient to environmental variability through a temporal portfolio effect
Cited by: 1
Author(s): Jacek Maselko, Kimberly R. Andrews, Paul A. Hohenlohe
Software Mentions: 6
Published: over 4 years ago

10.3389/fmed.2021.587496

Potential Prognostic Immune Biomarkers of Overall Survival in Ovarian Cancer Through Comprehensive Bioinformatics Analysis: A Novel Artificial Intelligence Survival Prediction System
Cited by: 4
Author(s): Tingshan He, Liwen Huang, Jing Li, Peng Wang, Zhiqiao Zhang
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-020-61164-2

Hurricane-Induced Rainfall is a Stronger Predictor of Tropical Forest Damage in Puerto Rico Than Maximum Wind Speeds
Cited by: 43
Author(s): Jazlynn Hall, Robert Muscarella, Andrew W. Quebbeman, Gabriel Arellano, Jill Thompson, Jess K. Zimmerman, María Uríarte
Software Mentions: 6
Published: over 4 years ago

10.1093/aje/kwy121

Estimating an Individual’s Probability of Revision Surgery After Knee Replacement: A Comparison of Modeling Approaches Using a National Data Set
Cited by: 15
Author(s): Parham Aram, Lea Trela-Larsen, Adrian Sayers, A. Hills, Ashley W Blom, Eugène McCloskey, Visakan Kadirkamanathan, J. Mark Wilkinson
Software Mentions: 5
Published: over 6 years ago

10.1186/s12874-017-0383-8

A comparison of the conditional inference survival forest model to random survival forests based on a simulation study as well as on two applications with time-to-event data
Cited by: 50
Author(s): Justine B. Nasejje, Henry Mwambi, Keertan Dheda, Maia Lesosky
Software Mentions: 5
Published: over 7 years ago

10.1186/s40644-021-00406-6

“Real-world” radiomics from multi-vendor MRI: an original retrospective study on the prediction of nodal status and disease survival in breast cancer, as an exemplar to promote discussion of the wider issues
Cited by: 10
Author(s): Simon J. Doran, Santosh Kumar, Matthew Orton, James A. d’Arcy, Fenna Kwaks, Elizabeth O’Flynn, Zaki Ahmed, Kate Downey, Mitch Dowsett, Nicholas C. Turner, Christina Messiou, Dow‐Mu Koh
Software Mentions: 5
Published: over 3 years ago

10.7717/peerj.9422

An RNA-sequencing-based transcriptome for a significantly prognostic novel driver signature identification in bladder urothelial carcinoma
Cited by: 6
Author(s): Danqi Liu, Boting Zhou, Rangru Liu
Software Mentions: 5
Published: over 4 years ago

10.7717/peerj.6548

Identification of an eight-gene signature for survival prediction for patients with hepatocellular carcinoma based on integrated bioinformatics analysis
Cited by: 41
Author(s): Guo-jie Qiao, Liang Chen, Junzhen Wu, Li Zhouri
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0157703

A Fit-Fat Index for Predicting Incident Diabetes in Apparently Healthy Men: A Prospective Cohort Study
Cited by: 23
Author(s): Robert A. Sloan, Benjamin Haaland, Susumu S. Sawada, I-Min Lee, Xuemei Sui, Duck-chul Lee, Yassine Ridouane, Falk Müller‐Riemenschneider, Steven N. Blair
Software Mentions: 5
Published: over 8 years ago

10.1093/conphys/coz075

Increased chilling tolerance of the invasive species Carpobrotus edulis may explain its expansion across new territories
Cited by: 3
Author(s): Erola Fenollosa, Sergi Munné‐Bosch
Software Mentions: 5
Published: almost 6 years ago

10.3390/diagnostics11030476

Association of Circulating miRNA Expression with Preeclampsia, Its Onset, and Severity
Cited by: 8
Author(s): Zuzana Kolková, Veronika Holubeková, Marián Grendár, Marcela Ňachajová, Pavol Žúbor, Terézia Pribulová, Dušan Loderer, Imrich Zigo, Kamil Biringer, Andrea Horňáková
Software Mentions: 5
Published: over 3 years ago

10.3389/fgene.2021.656114

Identification of the Signature Associated With m6A RNA Methylation Regulators and m6A-Related Genes and Construction of the Risk Score for Prognostication in Early-Stage Lung Adenocarcinoma
Cited by: 8
Author(s): Bingzhou Guo, Hongliang Zhang, Jinliang Wang, Rilige Wu, Junyan Zhang, Qiqin Zhang, Xu Lu, Ming Shen, Zhibo Zhang, Fangyan Gu, Wei Zeng, Xiaodong Jia, Chengliang Yin
Software Mentions: 5
Published: over 3 years ago

10.3389/fneur.2021.633390

Development of a Prognostic Five-Gene Signature for Diffuse Lower-Grade Glioma Patients
Cited by: 3
Author(s): Qiang Zhang, Wenhao Liu, Shunbin Luo, Fuchen Xie, Xiaojun Liu, Ren-ai Xu, Lixi Chen, Zhi-Lin Su
Software Mentions: 5
Published: over 3 years ago

10.1111/jcmm.15111

Novel miRNA markers for the diagnosis and prognosis of endometrial cancer
Cited by: 27
Author(s): Qian Wang, Kai Xu, Tong Yu, Xianning Dai, Teng Xu, Dazhi He, Jianchao Ying
Software Mentions: 5
Published: over 4 years ago

10.1002/jev2.12150

Stroma‐derived extracellular vesicle mRNA signatures inform histological nature of prostate cancer
Cited by: 6
Author(s): Alex P. Shephard, Peter Giles, Mariama Mbengue, Amr Alraies, Lisa K. Spary, Howard Kynaston, Mark Gurney, Juan Manuel Falcón‐Pérez, Félix Royo, Zsuzsanna Tabi, Dimitris Parthimos, Rachel J. Errington, Aled Clayton, Jason P. Webber
Software Mentions: 5
Published: about 3 years ago

10.3390/ijms20194688

SNPs rs11240569, rs708727, and rs823156 in SLC41A1 Do Not Discriminate Between Slovak Patients with Idiopathic Parkinson’s Disease and Healthy Controls: Statistics and Machine-Learning Evidence
Cited by: 7
Author(s): Michal Cibulka, Mária Brodňanová, Marián Grendár, Milan Grofik, Egon Kurča, Ivana Pilchová, Oto Osina, Zuzana Tatarková, Dušan Dobrota, Martin Kolísek
Software Mentions: 5
Published: about 5 years ago

10.1155/2021/5523749

Landscape of Immune Microenvironment in Epithelial Ovarian Cancer and Establishing Risk Model by Machine Learning
Cited by: 4
Author(s): Shiyi Liu, Ronghui Zhu, Zitao Wang, Wei Tan, Li Zhang, Yanqing Wang, Fangfang Dai, Mengqin Yuan, Y. Zheng, Dongyong Yang, Feiyan Wang, Xian Shu, Jian‐Qing He, Yu-Wei Zhang, Mali Wu, Zhanfeng Deng, Min Hu, Yanxiang Cheng, Yeqiang Liu
Software Mentions: 5
Published: about 3 years ago

10.1155/2021/6641421

Prognostic Models for Nonmetastatic Triple-Negative Breast Cancer Based on the Pretreatment Serum Tumor Markers with Machine Learning
Cited by: 0
Author(s): Huihui Chen, Shijie Wu, Jun Hu, Kun Zhang, Kaimin Hu, Yingfeng Lu, Jiapan He, Tao Pan, Yiding Chen
Software Mentions: 5
Published: over 3 years ago

10.1155/2021/5574150

Identifying Prognostic Significance of RCL1 and Four-Gene Signature as Novel Potential Biomarkers in HCC Patients
Cited by: 5
Author(s): Jun Liu, Shan-Qiang Zhang, Jing Chen, Zhibin Li, Qingming Lu, Yu-Shuai Han, Wenjie Dai, Chengyu Xie, Jicheng Li
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-020-75088-4

Disentangling etiologies of CNS infections in Singapore using multiple correspondence analysis and random forest
Cited by: 5
Author(s): Raphaël M. Zellweger, Sophie Yacoub, Yvonne Chan, Derek Soon, Humaira Shafi, Say Tat Ooi, Mónica Chan, Leslie Jacobson, October M. Sessions, Angela Vincent, Jenny Guek Hong Low, Eng Eong Ooi, Lin‐Fa Wang, Limin Wijaya, Kevin Tan, Singapore Neurologic Infections Program
Software Mentions: 4
Published: about 4 years ago

10.1186/s41512-018-0043-4

Combined performance of screening and variable selection methods in ultra-high dimensional data in predicting time-to-event outcomes
Cited by: 12
Author(s): Lira Pi, Susan Halabi
Software Mentions: 4
Published: about 6 years ago

10.1155/2019/3869825

A Novel Clinical Six-Flavoprotein-Gene Signature Predicts Prognosis in Esophageal Squamous Cell Carcinoma
Cited by: 6
Author(s): Peng Liu, Jincheng Guo, Li-Wen Lin, Feng Pan, Jian Zhao, Li–Yan Xu, En‐Min Li
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0232639

Computed tomography-derived radiomic signature of head and neck squamous cell carcinoma (peri)tumoral tissue for the prediction of locoregional recurrence and distant metastasis after concurrent chemo-radiotherapy
Cited by: 27
Author(s): Simon Keek, Sebastian Sanduleanu, Frederik Wesseling, Reinout de Roest, Michiel W. M. van den Brekel, Martijn van der Heijden, Conchita Vens, Giuseppina Calareso, Lisa Licitra, Kathrin Scheckenbach, Marije R. Vergeer, C. René Leemans, Ruud H. Brakenhoff, Irene Nauta, Stefano Cavalieri, Henry C. Woodruff, Tito Poli, Ralph T.H. Leijenaar, Frank Hoebers, Philippe Lambin
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-021-92944-z

A comparison of time to event analysis methods, using weight status and breast cancer as a case study
Cited by: 3
Author(s): Georgios Aivaliotis, Jan Palczewski, Rebecca A. Atkinson, Janet Cade, Michelle Morris
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-017-10558-w

Development and validation of a multivariate predictive model for rheumatoid arthritis mortality using a machine learning approach
Cited by: 45
Author(s): José M. Lezcano-Valverde, Fernando Salazar, Leticia León, Esther Toledano, Juan A. Jover, Eduardo Soudah, Isidoro González‐Álvaro, Lydia Abásolo, Luis Rodríguez‐Rodríguez
Software Mentions: 4
Published: about 7 years ago

10.3389/fpubh.2021.680054

The Optimal Machine Learning-Based Missing Data Imputation for the Cox Proportional Hazard Model
Cited by: 12
Author(s): Chao-Yu Guo, Ying-Chen Yang, Yi‐Hau Chen
Software Mentions: 4
Published: over 3 years ago

10.18632/oncotarget.9143

Which melanoma patient carries a BRAF-mutation? A comparison of predictive models
Cited by: 11
Author(s): Thomas Eigentler, Zeinab Assi, Jessica C. Hassel, Lucie Heinzerling, Hans Starz, Mark Berneburg, Juergen Bauer, Claus Garbe
Software Mentions: 4
Published: over 8 years ago

10.1002/cam4.1666

The TERT promoter mutation status and MGMT promoter methylation status, combined with dichotomized MRI-derived and clinical features, predict adult primary glioblastoma survival
Cited by: 20
Author(s): Chang Shu, Qiong Wang, Xiaoqian Yan, Jinhuan Wang
Software Mentions: 4
Published: over 6 years ago

10.1186/s13040-014-0028-y

Synthetic learning machines
Cited by: 22
Author(s): Hemant Ishwaran, James D. Malley
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0251272

Survival prediction based on the gene expression associated with cancer morphology and microenvironment in primary central nervous system lymphoma
Cited by: 4
Author(s): Yasuo Takashima, Atsushı Kawaguchi, Junya Fukai, Yasuo Iwadate, Koji Kajiwara, Hiroaki Hondoh
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2019.03155

Interacting Temperature, Nutrients and Zooplankton Grazing Control Phytoplankton Size-Abundance Relationships in Eight Swiss Lakes
Cited by: 29
Author(s): Francesco Pomati, Jonathan B. Shurin, Ken Haste Andersen, Christoph Tellenbach, Andrew D. Barton
Software Mentions: 4
Published: almost 5 years ago

10.3390/cells9061523

Potential Prognostic Role of SPARC Methylation in Non-Small-Cell Lung Cancer
Cited by: 9
Author(s): Federico Pio Fabrizio, Angelo Sparaneo, Andrea Fontana, Tommaso Mazza, Paolo Graziano, Angela Pantalone, Paola Parente, Flavia Centra, Natalizia Orlando, Domenico Trombetta, Annamaria la Torre, Gian Maria Ferretti, Marco Taurchini, Concetta Martina Di Micco, Evaristo Maiello, Vito Michele Fazio, Antonio Rossi, Lucia Anna Muscarella
Software Mentions: 4
Published: over 4 years ago

10.3389/fphys.2021.670989

Strenuous Physical Training, Physical Fitness, Body Composition and Bacteroides to Prevotella Ratio in the Gut of Elderly Athletes
Cited by: 15
Author(s): Katarína Šoltýs, Leonard Lendvorský, Ivan Hric, Eva Baranovičová, Adela Penesová, I. Mikula, Miroslav Böhmer, Jaroslav Budiš, Silvia Vávrová, Jozef Grones, Marián Grendár, Martin Kolísek, Viktor Bielik
Software Mentions: 4
Published: over 3 years ago

10.1186/s12940-019-0482-6

Two-step approach for assessing the health effects of environmental chemical mixtures: application to simulated datasets and real data from the Navajo Birth Cohort Study
Cited by: 4
Author(s): Li Luo, Laurie G. Hudson, Johnnye Lewis, Ji‐Hyun Lee
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.1910

Reconstructing the demographic history of divergence between European river and brook lampreys using approximate Bayesian computations
Cited by: 25
Author(s): Quentin Rougemont, Camille Roux, Samuel Neuenschwander, Jérôme Goudet, Sophie Launey, Guillaume Evanno
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0180236

An adjustable predictive score of graft survival in kidney transplant patients and the levels of risk linked to de novo donor-specific anti-HLA antibodies
Cited by: 14
Author(s): Aurélie Prémaud, Matthieu Filloux, Philippe Gatault, Antoine Thierry, Matthias Büchler, E Munteanu, Pierre Marquet, Marie Essig, Annick Rousseau
Software Mentions: 4
Published: over 7 years ago

10.1002/1878-0261.12811

High‐grade serous peritoneal cancer follows a high stromal response signature and shows worse outcome than ovarian cancer
Cited by: 1
Author(s): Francis Jacob, Rosa Lina Marchetti, André B. Kind, Kenneth J. Russell, Andreas Schoetzau, Viola Heinzelmann‐Schwarz
Software Mentions: 4
Published: about 4 years ago

10.18632/oncotarget.22947

Spatial habitats from multiparametric MR imaging are associated with signaling pathway activities and survival in glioblastoma
Cited by: 19
Author(s): Katherine Dextraze, Abhijoy Saha, Donnie Kim, Shivali Narang, Michael Lehrer, Aroor R. Rao, Saphal Narang, Dinesh Rao, Salmaan Ahmed, Venkatesh S Madhugiri, Clifton D. Fuller, Michelle M. Kim, Sunil Krishnan, Ganesh Rao, Arvind Rao
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12967-018-1744-8

Identification of a multidimensional transcriptome signature for survival prediction of postoperative glioblastoma multiforme patients
Cited by: 43
Author(s): Weizhen Gao, Liemei Guo, Tianqi Xu, Yu-Hua Yin, Jia Feng
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2021.732088

Development of a Nomogram for Predicting the Cumulative Incidence of Disease Recurrence of AML After Allo-HSCT
Cited by: 1
Author(s): Tongtong Zhang, Xiebing Bao, Huiying Qiu, Xiaowen Tang, Yue Han, Chengcheng Fu, Aining Sun, Changgeng Ruan, Depei Wu, Suning Chen, Xu Yang
Software Mentions: 4
Published: about 3 years ago

10.3390/cells8111312

Promising Prognosis Marker Candidates on the Status of Epithelial–Mesenchymal Transition and Glioma Stem Cells in Glioblastoma
Cited by: 23
Author(s): Yasuo Takashima, Atsushı Kawaguchi, Ryuya Yamanaka
Software Mentions: 3
Published: about 5 years ago

10.3390/nu13061753

The Efficacy of Short-Term Weight Loss Programs and Consumption of Natural Probiotic Bryndza Cheese on Gut Microbiota Composition in Women
Cited by: 13
Author(s): Ivan Hric, Simona Ugrayová, Adela Penesová, Žofia Rádiková, Libuša Kubáňová, Sára Šardzíková, Eva Baranovičová, Ľuboš Klučár, Gábor Beke, Marián Grendár, Martin Kolísek, Katarína Šoltýs, Viktor Bielik
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.644443

Prognostic Value of an Autophagy-Related Five-Gene Signature for Lower-Grade Glioma Patients
Cited by: 12
Author(s): Jincheng Guo, Qingshuang Wei, Dong Li, Shuangsang Fang, Feng Li, Yi Zhao
Software Mentions: 3
Published: over 3 years ago

10.3390/ijerph18137158

A Possible Preventive Role of Physically Active Lifestyle during the SARS-CoV-2 Pandemic; Might Regular Cold-Water Swimming and Exercise Reduce the Symptom Severity of COVID-19?
Cited by: 3
Author(s): Viktor Bielik, Marián Grendár, Martin Kolísek
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2020.00595

Development and Clinical Validation of a Novel 4-Gene Prognostic Signature Predicting Survival in Colorectal Cancer
Cited by: 35
Author(s): Yihang Yuan, Ji Chen, Jue Wang, Ming Xu, Yunpeng Zhang, Peng Sun, Leilei Liang
Software Mentions: 3
Published: over 4 years ago

10.1002/ctm2.11

The distribution of immune cells within combined hepatocellular carcinoma and cholangiocarcinoma predicts clinical outcome
Cited by: 21
Author(s): Bohao Zheng, Jiaqiang Ma, Lingyu Tian, Liangqing Dong, Guohe Song, Jinfeng Pan, Yuming Liu, Shenghong Yang, Xiaoying Wang, Xiaoming Zhang, Jian Zhou, Jia Fan, Jing Shi, Qiang Gao
Software Mentions: 3
Published: over 4 years ago

10.7717/peerj.1009

Rotation survival forest for right censored data
Cited by: 7
Author(s): Lifeng Zhou, Qingsong Xu, Wang Hong
Software Mentions: 3
Published: over 9 years ago

10.1186/s13063-020-4113-x

Identifying treatment effects of an informal caregiver education intervention to increase days in the community and decrease caregiver distress: a machine-learning secondary analysis of subgroup effects in the HI-FIVES randomized clinical trial
Cited by: 4
Author(s): Megan Shepherd‐Banigan, Valerie A. Smith, Jennifer H. Lindquist, Michael P. Cary, Katherine Miller, Jennifer Chapman, Courtney Harold Van Houtven
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0250963

The implementation of random survival forests in conflict management data: An examination of power sharing and third party mediation in post-conflict countries
Cited by: 2
Author(s): Andrew Whetten, John R. Stevens, Damon M. Cann
Software Mentions: 3
Published: over 3 years ago

10.1186/s12859-016-0995-8

Do little interactions get lost in dark random forests?
Cited by: 95
Author(s): Marvin N. Wright, Andreas Ziegler, Inke R. König
Software Mentions: 3
Published: over 8 years ago

10.1186/s12935-021-01852-9

RNA sequencing reveals the expression profiles of circRNA and identifies a four-circRNA signature acts as a prognostic marker in esophageal squamous cell carcinoma
Cited by: 11
Author(s): Weiwei Wang, Di Zhu, Zhihua Zhao, Menghong Sun, Feng Wang, Wencai Li, Jianying Zhang, Guozhong Jiang
Software Mentions: 3
Published: over 3 years ago

10.1186/s13014-020-01502-w

Magnetic resonance imaging features of tumor and lymph node to predict clinical outcome in node-positive cervical cancer: a retrospective analysis
Cited by: 17
Author(s): Shin Hyung Park, Myong Hun Hahm, Bong Kyung Bae, Gun Oh Chong, Shin Young Jeong, Sungdae Na, Sungmoon Jeong, Jae-Chul Kim
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-021-85991-z

Methodological considerations for identifying multiple plasma proteins associated with all-cause mortality in a population-based prospective cohort
Cited by: 3
Author(s): Isabel Drake, George Hindy, Peter Almgren, Gunnar Engström, Jan Nilsson, Olle Melander, Marju Orho‐Melander
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-020-61589-9

Analysis of SNP Array Abnormalities in Patients with DE NOVO Acute Myeloid Leukemia with Normal Karyotype
Cited by: 7
Author(s): Mariam Ibáñez, Esperanza Such, Esther Onecha, Inés Gómez-Seguí, Alessandro Liquori, Jorge Sellés, David Hervás‐Marín, Eva Barragán, Rosa Ayala, Marta Llop, Maria López-Pavía, Inmaculada Rapado, Alexander Neef, Alejandra Sanjuán-Pla, Claudia Sargas, Elisa González-Romero, Mireia Boluda-Navarro, Rafa Andreu, Leonor Senent, Pau Montesinos, Joaquín Martínez‐López, Miguel Á. Sanz, Guillermo Sanz, José Cervera
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-017-00252-2

Seven LncRNA-mRNA based risk score predicts the survival of head and neck squamous cell carcinoma
Cited by: 32
Author(s): Zhili Zhang, Lijing Zhao, Limin Chai, Shui‐Hong Zhou, Rui Wang, Wei Yan, Yaping Xu, Peng Zhao
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-018-23946-7

Prognostic value of cancer antigen -125 for lung adenocarcinoma patients with brain metastasis: A random survival forest prognostic model
Cited by: 10
Author(s): Hao Wang, Liuhai Shen, Jianhua Geng, Yitian Wu, Huan Xiao, Fan Zhang, Hongwei Si
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-46473-5

Differential expression of individual transcript variants of PD-1 and PD-L2 genes on Th-1/Th-2 status is guaranteed for prognosis prediction in PCNSL
Cited by: 22
Author(s): Yasuo Takashima, Atsushı Kawaguchi, Ryuichi Sato, Kenichi Yoshida, Azusa Hayano, Jumpei Homma, Junya Fukai, Yasuo Iwadate, Koji Kajiwara, Shin Ishizawa, Hiroaki Hondoh, Masakazu Nakano, Seishi Ogawa, Kei Tashiro
Software Mentions: 3
Published: over 5 years ago

10.1002/ecy.2437

Soil multifunctionality and drought resistance are determined by plant structural traits in restoring grassland
Cited by: 39
Author(s): Ellen L. Fry, Joanna Savage, Amy L. Hall, Simon Oakley, William J. Pritchard, Nicholas J. Ostle, R. F. Pywell, James M. Bullock, Richard D. Bardgett
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms21218221

Dietary Mg2+ Intake and the Na+/Mg2+ Exchanger SLC41A1 Influence Components of Mitochondrial Energetics in Murine Cardiomyocytes
Cited by: 3
Author(s): Zuzana Tatarková, Jeroen H. F. de Baaij, Marián Grendár, Jörg R. Aschenbach, Peter Račay, Caro Bos, Gerhard Sponder, Joost G. J. Hoenderop, Monika Röntgen, Monika Turčanová Koprušáková, Martin Kolísek
Software Mentions: 3
Published: about 4 years ago

10.1155/2020/6725753

Comprehensive Characterization of Prognostic Long Noncoding RNAs in Osteosarcoma
Cited by: 4
Author(s): Hua Gao, Yuanyuan Guo, Miaomiao Zhang, Zuqiang Yi
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0226976

Rad51 paralogs and the risk of unselected breast cancer: A case-control study
Cited by: 7
Author(s): Peter Grešner, Ewa Jabłońska, Jolanta Gromadzińska
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12859-017-1993-1

Improved high-dimensional prediction with Random Forests by the use of co-data
Cited by: 11
Author(s): Dennis E. te Beest, Steven W. Mes, Saskia M. Wilting, Ruud H. Brakenhoff, Mark A. van de Wiel
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12936-019-2893-9

Modelling reactive case detection strategies for interrupting transmission of Plasmodium falciparum malaria
Cited by: 22
Author(s): Theresa Reiker, Nakul Chitnis, T. Smith
Software Mentions: 3
Published: over 5 years ago

10.1186/s12957-021-02196-4

Comprehensive analyses of correlation and survival reveal informative lncRNA prognostic signatures in colon cancer
Cited by: 13
Author(s): Meng Gao, Yang Guo, Yifu Xiao, Xuequn Shang
Software Mentions: 3
Published: over 3 years ago

10.3390/cancers13164164

Clinical Categorization Algorithm (CLICAL) and Machine Learning Approach (SRF-CLICAL) to Predict Clinical Benefit to Immunotherapy in Metastatic Melanoma Patients: Real-World Evidence from the Istituto Nazionale Tumori IRCCS Fondazione Pascale, Napoli, Italy
Cited by: 5
Author(s): Gabriele Madonna, Giuseppe Masucci, Mariaelena Capone, Domenico Mallardo, Antonio Grimaldi, Ester Simeone, Vito Vanella, Lucia Festino, Marco Palla, Luigi Scarpato, Marilena Tuffanelli, Grazia D’Angelo, Lisa Villabona, I. Krakowski, Hanna Eriksson, Felipe Simao, Rolf Lewensohn, Paolo A. Ascierto
Software Mentions: 3
Published: over 3 years ago

10.3389/pore.2021.609083

6-lncRNA Assessment Model for Monitoring and Prognosis of HER2-Positive Breast Cancer: Based on Transcriptome Data
Cited by: 3
Author(s): Xiaoming Zhang, Haiyan Zhang, Jie Li, Xiaoran Ma, Zheng‐Guo He, Cun Liu, Chundi Gao, Huayao Li, Xue Wang, Jibiao Wu
Software Mentions: 3
Published: over 3 years ago

10.1186/s12888-021-03117-1

Escape and absconding among offenders with schizophrenia spectrum disorder – an explorative analysis of characteristics
Cited by: 6
Author(s): Johannes Kirchebner, Steffen Lau, Martina Sonnweber
Software Mentions: 2
Published: over 3 years ago

10.1136/openhrt-2020-001505

Territory-wide cohort study of Brugada syndrome in Hong Kong: predictors of long-term outcomes using random survival forests and non-negative matrix factorisation
Cited by: 30
Author(s): Sharen Lee, Jiandong Zhou, Ka Hou Christien Li, Keith Sai Kit Leung, Ishan Lakhani, Tong Liu, Ian Chi Kei Wong, Ngai Shing Mok, Chloe Miu Mak, Kamalan Jeevaratnam, Qingpeng Zhang, Gary Tse
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0216825

CD276 and the gene signature composed of GATA3 and LGALS3 enable prognosis prediction of glioblastoma multiforme
Cited by: 16
Author(s): Yasuo Takashima, Atsushı Kawaguchi, Azusa Hayano
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0254519

Interactions between staphylococcal enterotoxins A and D and superantigen-like proteins 1 and 5 for predicting methicillin and multidrug resistance profiles among Staphylococcus aureus ocular isolates
Cited by: 6
Author(s): Min Lü, Jean-Marie A. Parel, Darlene Miller
Software Mentions: 2
Published: over 3 years ago

10.1007/s00125-021-05444-0

Derivation and validation of a machine learning risk score using biomarker and electronic patient data to predict progression of diabetic kidney disease
Cited by: 50
Author(s): Lili Chan, Girish N. Nadkarni, Fergus Fleming, James R. McCullough, Patricia Connolly, Gohar Mosoyan, Fadi Salem, Michael W. Kattan, Joseph A. Vassalotti, Barbara Murphy, Michael Donovan, Steven G. Coca, Scott M. Damrauer
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/1615201

Identification of the Novel Methylated Genes’ Signature to Predict Prognosis in INRG High-Risk Neuroblastomas
Cited by: 3
Author(s): Zhichao Liu, Changchun Li
Software Mentions: 2
Published: about 3 years ago

10.3389/fgene.2021.708835

LR Hunting: A Random Forest Based Cell–Cell Interaction Discovery Method for Single-Cell Gene Expression Data
Cited by: 7
Author(s): Min Lü, Yifan Sha, Tiago C. Silva, Antonio Colaprico, Xiaodian Sun, Yuguang Ban, Lily Wang, Brian D. Lehmann, X Steven Chen
Software Mentions: 2
Published: over 3 years ago

Projects: cran: randomForestSRC

Papers Mentioning randomForestSRC 143