Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: xia2

https://packages.ecosyste.ms/registries/pypi.org/packages/xia2

An expert system for automated reduction of X-Ray diffraction data from macromolecular crystals
1 version
Latest release: over 5 years ago
11 downloads last month

Papers Mentioning xia2 165

10.1016/j.celrep.2020.107885
CD4+ T Cells Recognize Conserved Influenza A Epitopes through Shared Patterns of V-Gene Usage and Complementary Biochemical Features
Cited by: 9
Author(s): Alexander Greenshields‐Watson, Meriem Attaf, Bruce J. MacLachlan, Thomas Whalley, Cristina Rius, Aaron Wall, Alun G. Lloyd, Hywel Hughes, Kathryn E. Strange, Georgina H Mason, Andrea J. A. Schauenburg, Sarah Hulin-Curtis, James Geary, Yuan Chen, Sarah N. Lauder, Kathryn Smart, Dhanasekaran Vijaykrishna, Miguel L. Grau, Mikhail Shugay, Robert Andrews, Garry Dolton, P.J. Rizkallah, Awen Gallimore, Andrew K. Sewell, Andrew Godkin, David K. Cole
Software Mentions: 10
Published: over 4 years ago
10.1107/S2059798317016035
<i>CCP</i>4<i>i</i>2: the new graphical user interface to the<i>CCP</i>4 program suite
Cited by: 353
Author(s): Liz Potterton, Jon Agirre, Charles Ballard, Kevin Cowtan, E.J. Dodson, Phil Evans, Huw T. Jenkins, Ronan Keegan, Eugene Krissinel, Kyle Stevenson, А. А. Лебедев, Stuart McNicholas, Robert A. Nicholls, M.E.M. Noble, Navraj S. Pannu, Christian Roth, George M. Sheldrick, Pavol Skubák, J.P. Turkenburg, Ville Uski, Frank von Delft, David Waterman, K.S. Wilson, Martyn Winn, Marcin Wojdyr
Software Mentions: 8
Published: almost 7 years ago
10.1107/S2059798318004576
<i>KAMO</i>: towards automated data processing for microcrystals
Cited by: 174
Author(s): Keitaro Yamashita, Kunio Hirata, Masaki Yamamoto
Software Mentions: 8
Published: over 6 years ago
10.1107/S2059798316002187
Diffraction-geometry refinement in the<i>DIALS</i>framework
Cited by: 146
Author(s): David Waterman, Graeme Winter, Richard J. Gildea, James M. Parkhurst, Aaron S. Brewster, Nicholas K. Sauter, Gwyndaf Evans
Software Mentions: 6
Published: over 8 years ago
10.1107/S0907444913000863
New Python-based methods for data processing
Cited by: 92
Author(s): Nicholas K. Sauter, Johan Hattne, Ralf W. Grosse‐Kunstleve, Nathaniel Echols
Software Mentions: 6
Published: over 11 years ago
10.7554/eLife.02978
The pseudo GTPase CENP-M drives human kinetochore assembly
Cited by: 107
Author(s): Federica Basilico, Stefano Maffini, John R. Weir, Daniel Prumbaum, Ana M. Rojas, Tomasz Zimniak, De Antoni A, Sadasivam Jeganathan, Beate Voss, Suzan van Gerwen, Veronica Krenn, Lucia Massimiliano, Alfonso Valencia, Ingrid R. Vetter, Franz Herzog, Stefan Raunser, Sebastiano Pasqualato, Andrea Musacchio
Software Mentions: 5
Published: over 10 years ago
10.1107/S0907444910045749
Overview of the<i>CCP</i>4 suite and current developments
Cited by: 10,663
Author(s): Martyn Winn, Charles Ballard, Kevin Cowtan, E.J. Dodson, Paul Emsley, Phil Evans, Ronan Keegan, Eugene Krissinel, Andrew G. W. Leslie, Airlie J. McCoy, Stuart McNicholas, Garib N. Murshudov, Navraj S. Pannu, E. A. Potterton, Harold R. Powell, Randy J. Read, A.A. Vagin, K.S. Wilson
Software Mentions: 5
Published: over 13 years ago
10.1107/S1399004714017039
New methods for indexing multi-lattice diffraction data
Cited by: 53
Author(s): Richard J. Gildea, David Waterman, James M. Parkhurst, Danny Axford, Geoff Sutton, David I. Stuart, Nicholas K. Sauter, Gwyndaf Evans, Graeme Winter
Software Mentions: 5
Published: about 10 years ago
10.1111/febs.12975
Collapse of the native structure caused by a single amino acid exchange in human<scp>NAD</scp>(P)H:quinone oxidoreductase<sup>1</sup>
Cited by: 53
Author(s): Wolf‐Dieter Lienhart, Venugopal Gudipati, M. Uhl, Alexandra Binter, Sergio Pulido, Robert Saf, Klaus Zangger, Karl Gruber, Peter Macheroux
Software Mentions: 4
Published: about 10 years ago
10.1107/S2059798316020234
The<i>XChemExplorer</i>graphical workflow tool for routine or large-scale protein–ligand structure determination
Cited by: 68
Author(s): T. Krojer, R. Talon, Nicholas M. Pearce, P. Collins, A. Douangamath, J. Brandão-Neto, A. Dias, Brian D. Marsden, Frank von Delft
Software Mentions: 4
Published: over 7 years ago
10.7554/eLife.53789
Insights into herpesvirus assembly from the structure of the pUL7:pUL51 complex
Cited by: 23
Author(s): Benjamin G Butt, Danielle Owen, Cy M. Jeffries, Lyudmila Ivanova, C.P. Hill, Jennifer D. Houghton, Firoz Ahmed, Robin Antrobus, Dmitri I. Svergun, John J. Welch, Colin M. Crump, Stephen C. Graham
Software Mentions: 4
Published: over 4 years ago
10.1107/S1600576714022730
Tightly integrated single- and multi-crystal data collection strategy calculation and parallelized data processing in<i>JBluIce</i>beamline control system
Cited by: 12
Author(s): Sudhir Babu Pothineni, Nagarajan Venugopalan, Craig M. Ogata, Mark Hilgart, С. А. Степанов, Ruslan Sanishvili, Michael E. Becker, Graeme Winter, Nicholas K. Sauter, Janet L. Smith, Robert F. Fischetti
Software Mentions: 4
Published: about 10 years ago
10.1107/S2052252520000895
The predictive power of data-processing statistics
Cited by: 6
Author(s): M. Vollmar, James M. Parkhurst, Dominic Jaques, Arnaud Baslé, Garib N. Murshudov, David Waterman, Gwyndaf Evans
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0080371
Solution and Crystallographic Structures of the Central Region of the Phosphoprotein from Human Metapneumovirus
Cited by: 33
Author(s): C. Leyrat, Max Renner, K. Harlos, Jonathan M. Grimes
Software Mentions: 4
Published: about 11 years ago
10.1111/cea.12230
Human <scp>I</scp> g <scp>E</scp> against the major allergen <scp>B</scp> et v 1 – defining an epitope with limited cross‐reactivity between different <scp>PR</scp> ‐10 family proteins
Cited by: 20
Author(s): Mattias Levin, Anna M. Davies, Maria Liljekvist, Fredrika Carlsson, Hannah J. Gould, Brian J. Sutton, Mats Ohlin
Software Mentions: 3
Published: almost 11 years ago
10.1074/jbc.M114.627059
Neuronal Calcium Sensor-1 Binds the D2 Dopamine Receptor and G-protein-coupled Receptor Kinase 1 (GRK1) Peptides Using Different Modes of Interactions
Cited by: 25
Author(s): S. Pandalaneni, V. Karuppiah, Muhammad Saleem, Lee P. Haynes, Robert D. Burgoyne, Olga Mayans, Jeremy P. Derrick, Lu‐Yun Lian
Software Mentions: 3
Published: over 9 years ago
10.1107/S1399004714009997
The structure of the cysteine protease and lectin-like domains of Cwp84, a surface layer-associated protein from<i>Clostridium difficile</i>
Cited by: 15
Author(s): W.J. Bradshaw, Jonathan M. Kirby, N. Thiyagarajan, Christopher J. Chambers, Abigail H. Davies, April K. Roberts, Clifford C. Shone, K. Ravi Acharya
Software Mentions: 3
Published: over 10 years ago
10.1074/jbc.M117.776476
Allosteric mechanism of action of the therapeutic anti-IgE antibody omalizumab
Cited by: 57
Author(s): Anna M. Davies, Elizabeth G. Allan, Anthony H. Keeble, Jean Delgado, Benjamin P. Cossins, A.N. Mitropoulou, M.O.Y. Pang, Tom Ceska, Andrew J. Beavil, Graham Craggs, Marta Westwood, Alistair J. Henry, James M. McDonnell, Brian J. Sutton
Software Mentions: 3
Published: over 7 years ago
10.1074/jbc.RA118.006045
Structural insights into non-covalent ubiquitin activation of the cIAP1-UbcH5B∼ubiquitin complex
Cited by: 12
Author(s): Amrita Patel, Gary Sibbet, Danny T. Huang
Software Mentions: 3
Published: almost 6 years ago
10.1016/j.jbc.2021.100384
Bacillus subtilis YngB contributes to wall teichoic acid glucosylation and glycolipid formation during anaerobic growth
Cited by: 8
Author(s): Chih-Hung Wu, Jeanine Rismondo, Rhodri M. L. Morgan, Yang Shen, Martin J. Loessner, Gérald Larrouy-Maumus, Paul S. Freemont, Angelika Gründling
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.ppat.1000251
Rhabdovirus Matrix Protein Structures Reveal a Novel Mode of Self-Association
Cited by: 66
Author(s): Stephen C. Graham, René Assenberg, Olivier Delmas, Anil Kumar Verma, Alireza Gholami, Chiraz Talbi, Raymond J. Owens, David I. Stuart, Jonathan M. Grimes, Hervé Bourhy
Software Mentions: 3
Published: almost 16 years ago
10.1371/journal.ppat.1002085
The N-Terminus of the RNA Polymerase from Infectious Pancreatic Necrosis Virus Is the Determinant of Genome Attachment
Cited by: 34
Author(s): Stephen C. Graham, L. Peter Sarin, Mohammad W. Bahar, Robert A. Myers, David I. Stuart, Dennis H. Bamford, Jonathan M. Grimes
Software Mentions: 3
Published: over 13 years ago
10.1371/journal.ppat.1006448
Structure of the Neisseria Adhesin Complex Protein (ACP) and its role as a novel lysozyme inhibitor
Cited by: 18
Author(s): María Victoria Humbert, Amaka M. Awanye, Lu Lian, Jeremy P. Derrick, Myron Christodoulides
Software Mentions: 3
Published: over 7 years ago
10.1107/S2053230X15018336
Crystallization and X-ray diffraction studies of a complete bacterial fatty-acid synthase type I
Cited by: 8
Author(s): Mathias Enderle, A.A. McCarthy, Karthik S. Paithankar, Martin Grininger
Software Mentions: 3
Published: about 9 years ago
10.1107/S2059798319003528
How best to use photons
Cited by: 13
Author(s): Graeme Winter, Richard J. Gildea, Neil G. Paterson, John Beale, Markus Gerstel, Danny Axford, M. Vollmar, Katherine McAuley, R.L. Owen, Ralf Flaig, Alun Ashton, David R. Hall
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-018-29664-4
Structural basis for selective inhibition of immunoglobulin E-receptor interactions by an anti-IgE antibody
Cited by: 20
Author(s): Jiun-Bo Chen, Faruk Ramadani, M.O.Y. Pang, Rebecca L. Beavil, Mary D. Holdom, A.N. Mitropoulou, Andrew J. Beavil, Hannah J. Gould, Tse Wen Chang, Brian J. Sutton, James M. McDonnell, Anna M. Davies
Software Mentions: 3
Published: over 6 years ago
10.1016/j.str.2013.10.013
Structure and Self-Assembly of the Calcium Binding Matrix Protein of Human Metapneumovirus
Cited by: 45
Author(s): C. Leyrat, Max Renner, K. Harlos, Juha T. Huiskonen, Jonathan M. Grimes
Software Mentions: 3
Published: almost 11 years ago
10.1107/S2053230X20001466
Engineering the Fab fragment of the anti-IgE omalizumab to prevent Fab crystallization and permit IgE-Fc complex crystallization
Cited by: 4
Author(s): A.N. Mitropoulou, Tom Ceska, James T. Heads, Andrew J. Beavil, Alistair J. Henry, James M. McDonnell, Brian J. Sutton, Anna M. Davies
Software Mentions: 3
Published: over 4 years ago
10.1016/j.str.2017.01.002
Crystal Structure of the Heterotrimeric Integrin-Binding Region of Laminin-111
Cited by: 28
Author(s): David Pulido, Sadaf-Ahmahni Hussain, Erhard Hohenester
Software Mentions: 3
Published: over 7 years ago
10.1107/S1744309113012931
Structure of PatF from<i>Prochloron didemni</i>
Cited by: 26
Author(s): Andrew F. Bent, Jesko Koehnke, Wael E. Houssen, Margaret Caroline MacHin Smith, Marcel Jaspars, James H. Naismith
Software Mentions: 3
Published: over 11 years ago
10.1016/j.jmb.2013.10.039
Structural Determinants of Unique Properties of Human IgG4-Fc
Cited by: 95
Author(s): Anna M. Davies, Theo Rispens, Pleuni Ooijevaar-de Heer, Hannah J. Gould, Royston Jefferis, Rob C. Aalberse, Brian J. Sutton
Software Mentions: 3
Published: almost 11 years ago
10.1016/j.jmb.2015.10.027
A Substrate Mimic Allows High-Throughput Assay of the FabA Protein and Consequently the Identification of a Novel Inhibitor of Pseudomonas aeruginosa FabA
Cited by: 6
Author(s): L. Moynié, Anthony G. Hope, Kara Finzel, J.W. Schmidberger, Stuart M. Leckie, Günter Schneider, Michael D. Burkart, Andrew D. Smith, David W. Gray, James H. Naismith
Software Mentions: 3
Published: almost 9 years ago
10.7554/eLife.47713
Protein engineering expands the effector recognition profile of a rice NLR immune receptor
Cited by: 97
Author(s): Juan Carlos De la Concepcion, Marina Franceschetti, Dan MacLean, Ryohei Terauchi, Sophien Kamoun, Mark J. Banfield
Software Mentions: 3
Published: about 5 years ago
10.1107/S1744309113013249
ErpC, a member of the complement regulator-acquiring family of surface proteins from<i>Borrelia burgdorferi</i>, possesses an architecture previously unseen in this protein family
Cited by: 13
Author(s): Joseph Caesar, Steven Johnson, Peter Kraiczy, Susan M. Lea
Software Mentions: 3
Published: over 11 years ago
10.7554/eLife.65339
Uncovering an allosteric mode of action for a selective inhibitor of human Bloom syndrome protein
Cited by: 12
Author(s): Xiangrong Chen, Yusuf Ali, Charlotte E L Fisher, Raquel Arribas-Bosacoma, Mohan B. Rajasekaran, Gareth Williams, Sarah Walker, Jessica R Booth, Jessica J. R. Hudson, S. Mark Roe, Laurence H. Pearl, Simon E. Ward, Frances M. G. Pearl, Antony W. Oliver
Software Mentions: 3
Published: over 3 years ago
10.1016/j.yjsbx.2020.100031
In crystallo-screening for discovery of human norovirus 3C-like protease inhibitors
Cited by: 1
Author(s): Jingxu Guo, A. Douangamath, Weixiao Song, Alun R. Coker, A. W. Edith Chan, Steve Wood, J.B. Cooper, E. Resnick, Nir London, F. von Delft
Software Mentions: 3
Published: almost 5 years ago
10.1016/j.molcel.2017.09.027
A General Strategy for Discovery of Inhibitors and Activators of RING and U-box E3 Ligases with Ubiquitin Variants
Cited by: 54
Author(s): Mads Gabrielsen, Lori Buetow, Mark A. Nakasone, Syed Feroj Ahmed, Gary Sibbet, Brian O. Smith, Wei Zhang, Sachdev S. Sidhu, Danny T. Huang
Software Mentions: 3
Published: about 7 years ago
10.1107/S2059798320003198
Scaling diffraction data in the <i>DIALS</i> software package: algorithms and new approaches for multi-crystal scaling
Cited by: 95
Author(s): James Beilsten-Edmands, Graeme Winter, Richard J. Gildea, James M. Parkhurst, David Waterman, Gwyndaf Evans
Software Mentions: 3
Published: over 4 years ago
10.1016/j.molimm.2017.11.022
Crystal structures of murine and human Histamine-Releasing Factor (HRF/TCTP) and a model for HRF dimerisation in mast cell activation
Cited by: 12
Author(s): K.A. Dore, Jun‐ichi Kashiwakura, James M. McDonnell, Hannah Gould, Toshiaki Kawakami, Brian J. Sutton, Anna M. Davies
Software Mentions: 3
Published: almost 7 years ago
10.1016/j.molimm.2016.11.021
Room temperature structure of human IgG4-Fc from crystals analysed in situ
Cited by: 7
Author(s): Anna M. Davies, Theo Rispens, Pleuni Ooijevaar-de Heer, Rob C. Aalberse, Brian J. Sutton
Software Mentions: 3
Published: almost 8 years ago
10.1107/S2059798321003818
<i>FragMAXapp</i>: crystallographic fragment-screening data-analysis and project-management system
Cited by: 9
Author(s): G.M.A. Lima, E. Jagudin, V. Talibov, L.S. Benz, Costantino Marullo, T. Barthel, J. Wollenhaupt, M.S. Weiss, U. Muêller
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0080947
Crystal Structures of the Human G3BP1 NTF2-Like Domain Visualize FxFG Nup Repeat Specificity
Cited by: 43
Author(s): T. Vognsen, Ingvar R. Möller, Ole Kristensen
Software Mentions: 3
Published: almost 11 years ago
10.1016/j.cell.2019.12.014
Structural Basis of Teneurin-Latrophilin Interaction in Repulsive Guidance of Migrating Neurons
Cited by: 84
Author(s): Daniel del Toro, Maria Carrasquero-Ordaz, Amy Chu, Tobias Ruff, Meriam Shahin, V.A. Jackson, Matthieu Chavent, Miguel Berbeira-Santana, Goenuel Seyit-Bremer, Sara Brignani, Rainer Kaufmann, E.D. Lowe, Rüdiger Klein, E. Seiradake
Software Mentions: 3
Published: almost 5 years ago
10.1107/S2059798318006678
Engineering glycoside hydrolase stability by the introduction of zinc binding
Cited by: 1
Author(s): Thomas L. Ellinghaus, J.H. Pereira, R.P. McAndrew, Ditte Hededam Welner, Andy DeGiovanni, Joel M. Guenther, Huu M. Tran, Taya Feldman, Blake A. Simmons, Kenneth L. Sale, Paul D. Adams
Software Mentions: 3
Published: over 6 years ago
10.1107/S090744491003982X
An introduction to data reduction: space-group determination, scaling and intensity statistics
Cited by: 1,194
Author(s): Philip R. Evans
Software Mentions: 3
Published: over 13 years ago
10.1107/S0907444913015308
Decision making in<i>xia</i>2
Cited by: 479
Author(s): Graeme Winter, C.M.C. Lobley, Stephen M. Prince
Software Mentions: 3
Published: over 11 years ago
10.1107/S1744309113012748
Further structural insights into the binding of complement factor H by complement regulator-acquiring surface protein 1 (CspA) of<i>Borrelia burgdorferi</i>
Cited by: 13
Author(s): Joseph Caesar, Reinhard Wallich, Peter Kraiczy, Peter F. Zipfel, Susan M. Lea
Software Mentions: 2
Published: over 11 years ago
10.1107/S1600576716013595
Robust background modelling in <i>DIALS</i>
Cited by: 43
Author(s): James M. Parkhurst, Graeme Winter, David Waterman, Luis Fuentes-Montero, Richard J. Gildea, Garib N. Murshudov, Gwyndaf Evans
Software Mentions: 2
Published: about 8 years ago
10.1016/j.jmb.2013.09.016
Plug-and-Play Pairing via Defined Divalent Streptavidins
Cited by: 86
Author(s): M. Fairhead, Denis Krndija, E.D. Lowe, Mark Howarth
Software Mentions: 2
Published: almost 11 years ago
10.1016/j.jmb.2018.08.027
Molecular Basis for Immunity Protein Recognition of a Type VII Secretion System Exported Antibacterial Toxin
Cited by: 24
Author(s): Timothy A. Klein, Manuel Pazos, Michael G. Surette, Waldemar Vollmer, John C. Whitney
Software Mentions: 2
Published: about 6 years ago
10.1074/jbc.M116.748160
Ligand-bound Structures and Site-directed Mutagenesis Identify the Acceptor and Secondary Binding Sites of Streptomyces coelicolor Maltosyltransferase GlgE
Cited by: 11
Author(s): Karl Syson, Clare E. M. Stevenson, Farzana Miah, J. Elaine Barclay, Minhong Tang, Andrii Gorelik, Abdur Rashid, David M. Lawson, Stephen Bornemann
Software Mentions: 2
Published: about 8 years ago
10.1016/j.jmb.2013.01.004
Sequence-Specific, RNA–Protein Interactions Overcome Electrostatic Barriers Preventing Assembly of Satellite Tobacco Necrosis Virus Coat Protein
Cited by: 51
Author(s): Robert J. Ford, Amy Barker, Saskia E. Bakker, Robert H.A. Coutts, Neil A. Ranson, Simon E. V. Phillips, Arwen R. Pearson, Peter G. Stockley
Software Mentions: 2
Published: over 11 years ago
10.1107/S0907444913011323
Structure of the cobalamin-binding protein of a putative<i>O</i>-demethylase from<i>Desulfitobacterium hafniense</i>DCB-2
Cited by: 6
Author(s): Hanno Sjuts, Mark S. Dunstan, Karl Fisher, D. Leys
Software Mentions: 2
Published: over 11 years ago
10.1107/S0907444912051670
Structural studies of<i>Pseudomonas</i>and<i>Chromobacterium</i>ω-aminotransferases provide insights into their differing substrate specificity
Cited by: 50
Author(s): C. Sayer, Michail N. Isupov, Aaron Westlake, Jennifer A. Littlechild
Software Mentions: 2
Published: over 11 years ago
10.1074/jbc.M113.543546
Evidence for Steric Regulation of Fibrinogen Binding to Staphylococcus aureus Fibronectin-binding Protein A (FnBPA)
Cited by: 29
Author(s): Vaclav Stemberk, Richard Jones, Olga V. Moroz, Kate E. Atkin, Andrew M. Edwards, J.P. Turkenburg, Andrew Leech, Ruth C. Massey, Jennifer R. Potts
Software Mentions: 2
Published: over 10 years ago
10.1107/S1399004715002916
The role of monovalent cations in the ATPase reaction of DNA gyrase
Cited by: 15
Author(s): S.J. Hearnshaw, T.T. Chung, C.E.M. Stevenson, Anthony Maxwell, David M. Lawson
Software Mentions: 2
Published: over 9 years ago
10.1038/s42003-019-0427-1
Structure of Mycobacterium tuberculosis phosphatidylinositol phosphate synthase reveals mechanism of substrate binding and metal catalysis
Cited by: 20
Author(s): K. Grave, M.D. Bennett, Martin Högbom
Software Mentions: 2
Published: over 5 years ago
10.7554/eLife.02674
Drastic changes in conformational dynamics of the antiterminator M2-1 regulate transcription efficiency in Pneumovirinae
Cited by: 39
Author(s): C. Leyrat, Max Renner, K. Harlos, Juha T. Huiskonen, Jonathan M. Grimes
Software Mentions: 2
Published: over 10 years ago
10.1074/jbc.RA120.012636
MutT homologue 1 (MTH1) removes N6-methyl-dATP from the dNTP pool
Cited by: 9
Author(s): Emma Rose Scaletti, Karl S. A. Vallin, Lars Bräutigam, Antonio Sarno, Ulrika Warpman Berglund, Thomas Helleday, Pål Stenmark, Ann-Sofie Jemth
Software Mentions: 2
Published: over 4 years ago
10.1107/S2059798316003065
A generic protocol for protein crystal dehydration using the HC1b humidity controller
Cited by: 14
Author(s): C.M.C. Lobley, James Sandy, Juan Sánchez-Weatherby, Marco Mazzorana, T. Krojer, Radosław P. Nowak, Thomas Sørensen
Software Mentions: 2
Published: over 8 years ago
10.1107/S2059798315021580
Using selenomethionyl derivatives to assign sequence in low-resolution structures of the AP2 clathrin adaptor
Cited by: 1
Author(s): Bernard T. Kelly, Stephen C. Graham, David J. Owen
Software Mentions: 2
Published: over 8 years ago
10.1016/j.jsb.2016.08.006
Structures of type IV pilins from Thermus thermophilus demonstrate similarities with type II secretion system pseudopilins
Cited by: 11
Author(s): V. Karuppiah, Angela Thistlethwaite, Jeremy P. Derrick
Software Mentions: 2
Published: almost 8 years ago
10.1016/j.sbi.2018.01.009
Bringing diffuse X-ray scattering into focus
Cited by: 26
Author(s): Michael E. Wall, Alexander M. Wolff, James S. Fraser
Software Mentions: 2
Published: over 6 years ago
10.1074/jbc.RA118.007285
A low-potential terminal oxidase associated with the iron-only nitrogenase from the nitrogen-fixing bacterium Azotobacter vinelandii
Cited by: 19
Author(s): Febin Varghese, B.V. Kabasakal, Charles A. R. Cotton, Julia Schumacher, A. William Rutherford, Andrea Fantuzzi, James W. Murray
Software Mentions: 2
Published: over 5 years ago
10.1016/j.bmc.2018.02.043
Structure activity relationship studies on rhodanines and derived enethiol inhibitors of metallo-β-lactamases
Cited by: 18
Author(s): D. Zhang, Marios S. Markoulides, Dmitrijs Stepanovs, Anna M. Rydzik, Ahmed El-Hussein, C. Bon, Jos J. A. G. Kamps, Klaus‐Daniel Umland, P. Collins, Samuel T. Cahill, D.Y. Wang, Frank von Delft, Jürgen Brem, McDonough, Christopher J. Schofield
Software Mentions: 2
Published: over 6 years ago
10.1042/BSR20150183
Epsilon glutathione transferases possess a unique class-conserved subunit interface motif that directly interacts with glutathione in the active site
Cited by: 10
Author(s): Jantana Wongsantichon, Robert Robinson, Albert J. Ketterman
Software Mentions: 2
Published: almost 9 years ago
10.1107/S2059798318002978
Determination of Patterson group symmetry from sparse multi-crystal data sets in the presence of an indexing ambiguity
Cited by: 19
Author(s): Richard J. Gildea, Graeme Winter
Software Mentions: 2
Published: over 6 years ago
10.15252/embj.201797278
Structural basis for antibacterial peptide self‐immunity by the bacterial ABC transporter McjD
Cited by: 51
Author(s): Kiran Bountra, Gregor Hagelueken, Hassanul G. Choudhury, Valentina Corradi, Kamel El Omari, Armin Wagner, Indran Mathavan, Séverine Zirah, Weixiao Yuan Wahlgren, D. Peter Tieleman, Olav Schiemann, Sylvie Rebuffat, Konstantinos Beis
Software Mentions: 2
Published: about 7 years ago
10.1107/S2059798318017825
Coping with strong translational noncrystallographic symmetry and extreme anisotropy in molecular replacement with <i>Phaser</i>: human Rab27a
Cited by: 8
Author(s): Mostafa Jamshidiha, Inmaculada Pérez‐Dorado, James W. Murray, Edward W. Tate, Ernesto Cota, Randy J. Read
Software Mentions: 2
Published: over 5 years ago
10.1111/j.1742-4658.2011.08022.x
Factor‐inhibiting hypoxia‐inducible factor (FIH) catalyses the post‐translational hydroxylation of histidinyl residues within ankyrin repeat domains
Cited by: 69
Author(s): Ming Yang, Rasheduzzaman Chowdhury, Wei Ge, Refaat B. Hamed, Michael A. McDonough, Timothy D. W. Claridge, Benedikt M. Kessler, Matthew E. Cockman, Peter J. Ratcliffe, Christopher J. Schofield
Software Mentions: 2
Published: over 13 years ago
10.1074/jbc.M115.673632
Streptococcus pneumoniae NanC
Cited by: 36
Author(s): C.D. Owen, P. Lukacik, Jonathan Potter, O.K. Sleator, G.L. Taylor, M.A. Walsh
Software Mentions: 2
Published: about 9 years ago
10.1107/S2053230X18000250
Structure of a <i>Talaromyces pinophilus</i> GH62 arabinofuranosidase in complex with AraDNJ at 1.25 Å resolution
Cited by: 4
Author(s): Olga V. Moroz, L.F. Sobala, E.V. Blagova, Travis Coyle, Wei Peng, Kristian B. R. M. Krogh, Keith A. Stubbs, K.S. Wilson, G.J. Davies
Software Mentions: 2
Published: over 6 years ago
10.1111/mmi.12656
The structure, function and properties of sirohaem decarboxylase - an enzyme with structural homology to a transcription factor family that is part of the alternative haem biosynthesis pathway
Cited by: 14
Author(s): David J. Palmer, Susanne Schroeder, Andrew D. Lawrence, Evelyne Deery, Susana A.L. Lobo, Lı́gia M. Saraiva, Kirsty J. McLean, Andrew W. Munro, Stuart J. Ferguson, Richard W. Pickersgill, David G. Brown, Martin J. Warren
Software Mentions: 2
Published: over 10 years ago
10.1111/mmi.12542
Identification and characterization of the ‘missing’ terminal enzyme for siroheme biosynthesis in α‐proteobacteria
Cited by: 20
Author(s): Shilpa Bali, Sarah E. Rollauer, Pietro Roversi, Evelyne Raux‐Deery, Susan M. Lea, Martin J. Warren, Stuart J. Ferguson
Software Mentions: 2
Published: over 10 years ago
10.12688/wellcomeopenres.16078.2
Non-native fold of the putative VPS39 zinc finger domain
Cited by: 0
Author(s): Benjamin G Butt, Edward J. Scourfield, Stephen C. Graham
Software Mentions: 2
Published: over 4 years ago
10.1002/2211-5463.12168
Structural evidence for<i>Arabidopsis</i>glutathione transferase<i>At</i>GSTF2 functioning as a transporter of small organic ligands
Cited by: 20
Author(s): Laziana Ahmad, Elizabeth L. Rylott, Neil C. Bruce, Robert Edwards, Gideon Grogan
Software Mentions: 2
Published: almost 8 years ago
10.1074/jbc.RA118.006561
Molecular basis of cullin-3 (Cul3) ubiquitin ligase subversion by vaccinia virus protein A55
Cited by: 13
Author(s): Chen Gao, Mitchell A. Pallett, Tristan I. Croll, Geoffrey L. Smith, Stephen C. Graham
Software Mentions: 2
Published: over 5 years ago
10.1074/jbc.M117.815316
An allosteric binding site of the α7 nicotinic acetylcholine receptor revealed in a humanized acetylcholine-binding protein
Cited by: 29
Author(s): F. Delbart, Marijke Brams, Fabian Gruss, Sam Noppen, Steve Peigneur, Sandro Boland, Patrick Chaltin, J. Brandão-Neto, Frank von Delft, Wouter G. Touw, Robbie P. Joosten, Sandra Liekens, Jan Tytgat, Chris Ulens
Software Mentions: 2
Published: almost 7 years ago
10.1126/sciadv.1500980
The crystal structure of human dopamine β-hydroxylase at 2.9 Å resolution
Cited by: 76
Author(s): Trine V. Vendelboe, Pernille Harris, Yuguang Zhao, Thomas S. Walter, K. Harlos, Kamel El Omari, Hans Erik Mølager Christensen
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0098551
Identification of NAD(P)H Quinone Oxidoreductase Activity in Azoreductases from P. aeruginosa: Azoreductases and NAD(P)H Quinone Oxidoreductases Belong to the Same FMN-Dependent Superfamily of Enzymes
Cited by: 50
Author(s): Ali Ryan, Elise Kaplan, Jean‐Christophe Nebel, Elena Polycarpou, Vincenzo Crescente, E.D. Lowe, Gail M. Preston, Edith Sim
Software Mentions: 2
Published: over 10 years ago
10.1107/S2053230X21007378
Structures of the <i>Plasmodium falciparum</i> heat-shock protein 70-x ATPase domain in complex with chemical fragments identify conserved and unique binding sites
Cited by: 3
Author(s): Nada Mohamad, Ailsa O’Donoghue, A.L. Kantsadi, Ioannis Vakonakis
Software Mentions: 2
Published: over 3 years ago
10.1107/S0907444913028473
Structural basis of SUFU–GLI interaction in human Hedgehog signalling regulation
Cited by: 54
Author(s): Amy L. Cherry, Csaba Finta, Mikael Karlström, Qianren Jin, Thomas Schwend, Juan Astorga‐Wells, Roman A. Zubarev, Mark Del Campo, Angela Criswell, Daniele de Sanctis, Luca Jovine, Rune Toftgård
Software Mentions: 2
Published: about 11 years ago
10.1371/journal.pone.0087350
Crystal Structure of an (R)-Selective ω-Transaminase from Aspergillus terreus
Cited by: 70
Author(s): Andrzej Franciszek Lyskowski, Christian Gruber, Georg Steinkellner, Martin Schürmann, Helmut Schwab, Karl Gruber, Kerstin Steiner
Software Mentions: 2
Published: almost 11 years ago
10.1107/S2053230X17001376
Crystal structure of the type IV secretion system component CagX fromHelicobacter pylori
Cited by: 7
Author(s): Jin Zhang, Fan Fei, Yunmeng Zhao, Lifang Sun, Yadan Liu, Ronan Keegan, Michail N. Isupov, Yunkun Wu
Software Mentions: 2
Published: over 7 years ago
10.1039/d0cb00142b
Bypassing the requirement for aminoacyl-tRNA by a cyclodipeptide synthase enzyme
Cited by: 5
Author(s): Christopher John Harding, Emmajay Sutherland, Jane G. Hanna, Douglas R. Houston, Clarissa Melo Czekster
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0248190
Fungal GH25 muramidases: New family members with applications in animal nutrition and a crystal structure at 0.78Å resolution
Cited by: 3
Author(s): Olga V. Moroz, E.V. Blagova, Edward J. Taylor, J.P. Turkenburg, L.K. Skov, Garry P. Gippert, Kirk Schnorr, Ming Li, Ye Liu, Mikkel Klausen, Marianne Thorup Cohn, E. G. Schmidt, Søren Nymand-Grarup, G.J. Davies, K.S. Wilson
Software Mentions: 2
Published: over 3 years ago
10.1002/pro.2456
The crystal structure of NS5A domain 1 from genotype 1a reveals new clues to the mechanism of action for dimeric HCV inhibitors
Cited by: 91
Author(s): Sebastian Lambert, David R. Langley, James A. Garnett, Richard Angell, Katy Hedgethorne, Nicholas A. Meanwell, Stephen Matthews
Software Mentions: 2
Published: over 10 years ago
10.1107/S2053230X15001351
Improved crystallization and diffraction of caffeine-induced death suppressor protein 1 (Cid1)
Cited by: 1
Author(s): Luke A. Yates, Benjamin P. Durrant, M. Barber, K. Harlos, Sophie Fleurdépine, Chris J. Norbury, Robert J.C. Gilbert
Software Mentions: 2
Published: over 9 years ago
10.1107/S2053230X15008584
Structure of human saposin A at lysosomal pH
Cited by: 11
Author(s): C.P. Hill, Randy J. Read, Janet E. Deane
Software Mentions: 2
Published: over 9 years ago
10.1107/S139900471401267X
Structural and dynamic changes associated with beneficial engineered single-amino-acid deletion mutations in enhanced green fluorescent protein
Cited by: 16
Author(s): James A. J. Arpino, P.J. Rizkallah, D. Dafydd Jones
Software Mentions: 2
Published: over 10 years ago
10.1074/jbc.M116.752782
The Salmonella Effector SpvD Is a Cysteine Hydrolase with a Serovar-specific Polymorphism Influencing Catalytic Activity, Suppression of Immune Responses, and Bacterial Virulence
Cited by: 31
Author(s): Grzegorz Grabe, Yue Zhang, Michael Przydacz, Nathalie Rolhion, Yi Yang, Jonathan N. Pruneda, David Komander, David W. Holden, S. Hare
Software Mentions: 2
Published: almost 8 years ago
10.1107/S2053230X19010896
Structure of the archaeal chemotaxis protein CheY in a domain-swapped dimeric conformation
Cited by: 9
Author(s): Karthik S. Paithankar, Mathias Enderle, David C. Wirthensohn, A. Dusty Miller, Matthias Schlesner, Friedhelm Pfeiffer, Alexander Rittner, Martin Grininger, Dieter Oesterhelt
Software Mentions: 2
Published: about 5 years ago
10.1111/tra.12457
Cellular and viral peptides bind multiple sites on the N-terminal domain of clathrin
Cited by: 29
Author(s): Julia Muenzner, Linton M. Traub, Bernard T. Kelly, Stephen C. Graham
Software Mentions: 2
Published: almost 8 years ago
10.1107/S2053230X1501657X
High-resolution structures of<i>Lactobacillus salivarius</i>transketolase in the presence and absence of thiamine pyrophosphate
Cited by: 1
Author(s): P. Lukacik, C.M.C. Lobley, Mario Bumann, Victoria Arena De Souza, Raymond J. Owens, Paul W. O’Toole, Martin A. Walsh
Software Mentions: 2
Published: about 9 years ago
10.1107/S205979832001253X
Structure of a GH51 α-<scp>L</scp>-arabinofuranosidase from <i>Meripilus giganteus</i>: conserved substrate recognition from bacteria to fungi
Cited by: 7
Author(s): N.G.S. McGregor, J.P. Turkenburg, Kristian B. R. M. Krogh, Jens Erik Nielsen, Marta Artola, Keith A. Stubbs, Herman S. Overkleeft, G.J. Davies
Software Mentions: 2
Published: about 4 years ago
10.1107/S205225251800386X
Enzyme catalysis captured using multiple structures from one crystal at varying temperatures
Cited by: 25
Author(s): Sam Horrell, D. Kekilli, Kakali Sen, Robin L. Owen, Florian Dworkowski, S.V. Antonyuk, Thomas W. Keal, Chin W. Yong, Robert R. Eady, S.S. Hasnain, R.W. Strange, Hough
Software Mentions: 2
Published: over 6 years ago
10.1074/jbc.M114.624650
Vaccinia Virus Protein A49 Is an Unexpected Member of the B-cell Lymphoma (Bcl)-2 Protein Family
Cited by: 51
Author(s): Sarah Neidel, Carlos Maluquer de Motes, Daniel Santos Mansur, Pavla Strnadova, Geoffrey L. Smith, Stephen C. Graham
Software Mentions: 2
Published: over 9 years ago
10.1107/S2052252520013615
Joint neutron/X-ray crystal structure of a mechanistically relevant complex of perdeuterated urate oxidase and simulations provide insight into the hydration step of catalysis
Cited by: 5
Author(s): Lindsay McGregor, Tamás Földes, Soi Bui, Martine Moulin, Nicolas Coquelle, Matthew P. Blakeley, Edina Rosta, Roberto A. Steiner
Software Mentions: 2
Published: almost 4 years ago
10.1107/S1744309112044739
The AEROPATH project targeting<i>Pseudomonas aeruginosa</i>: crystallographic studies for assessment of potential targets in early-stage drug discovery
Cited by: 30
Author(s): L. Moynié, R. Schnell, S.A. McMahon, T. Sandalova, Wassila Abdelli Boulkerou, J.W. Schmidberger, M.S. Alphey, C.D. Cukier, F.G. Duthie, J. Kopec, Huanting Liu, Agata Jacewicz, William N. Hunter, James H. Naismith, Günter Schneider
Software Mentions: 2
Published: almost 12 years ago
10.1107/S205225251600823X
Serial crystallography captures enzyme catalysis in copper nitrite reductase at atomic resolution from one crystal
Cited by: 56
Author(s): Sam Horrell, S.V. Antonyuk, Robert R. Eady, S.S. Hasnain, Michael A. Hough, R.W. Strange
Software Mentions: 2
Published: over 8 years ago