cran: deSolve | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2020.02033

Plasmid Interactions Can Improve Plasmid Persistence in Bacterial Populations
Cited by: 24
Author(s): João Alves Gama, Rita Zilhão, Francisco Dionísio
Software Mentions: 13
Published: about 4 years ago

10.1371/journal.pgen.1008458

Microbial phenotypic heterogeneity in response to a metabolic toxin: Continuous, dynamically shifting distribution of formaldehyde tolerance in Methylobacterium extorquens populations
Cited by: 23
Author(s): Jessica A. Lee, Siavash Riazi, Shahla Nemati, Jannell V. Bazurto, Andreas E. Vasdekis, Benjamin J. Ridenhour, Christopher H. Remien, Christopher J. Marx
Software Mentions: 10
Published: about 5 years ago

10.3389/fphys.2017.00917

Uncertainty Quantification Reveals the Importance of Data Variability and Experimental Design Considerations for in Silico Proarrhythmia Risk Assessment
Cited by: 66
Author(s): Kelly C. Chang, Sara Dutta, Gary R. Mirams, Kylie A. Beattie, Jiansong Sheng, Phu N. Tran, Min Wu, Wendy Wu, Thomas Colatsky, David G. Strauss, Zhihua Li
Software Mentions: 7
Published: about 7 years ago

10.3389/fphar.2019.01394

Development, Testing, Parameterization, and Calibration of a Human Physiologically Based Pharmacokinetic Model for the Plasticizer, Hexamoll® Diisononyl-Cyclohexane-1, 2-Dicarboxylate Using In Silico, In Vitro, and Human Biomonitoring Data
Cited by: 9
Author(s): Kevin McNally, Craig Sams, George Loizou
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12936-017-2130-3

Towards malaria elimination in Savannakhet, Lao PDR: mathematical modelling driven strategy design
Cited by: 18
Author(s): Sai Thein Than Tun, Lorenz von Seidlein, Tiengkham Pongvongsa, Mayfong Mayxay, Sompob Saralamba, Shwe Sin Kyaw, Phetsavanh Chanthavilay, O. Celhay, Tran Dang Nguyen, Thu Nguyen-Anh Tran, Daniel M. Parker, Maciej F. Boni, Arjen M. Dondorp, Lisa J. White
Software Mentions: 6
Published: almost 7 years ago

10.7554/eLife.58931

Recurrent evolution of high virulence in isolated populations of a DNA virus
Cited by: 11
Author(s): Tom Hill, Robert L. Unckless
Software Mentions: 6
Published: about 4 years ago

10.3390/pharmaceutics11050224

Application of Pharmacometrics in Pharmacotherapy: Open-Source Software for Vancomycin Therapeutic Drug Management
Cited by: 14
Author(s): Soo Hyeon Bae, Dong‐Seok Yim, Hyemi Lee, Ae-Ryoung Park, J. Chan Kwon, Satoshi Hirata, Seunghoon Han
Software Mentions: 6
Published: over 5 years ago

10.1016/j.tox.2017.03.012

The margin of internal exposure (MOIE) concept for dermal risk assessment based on oral toxicity data – A case study with caffeine
Cited by: 25
Author(s): Jos Bessems, Alicia Paini, M Gajewska, Andrew Worth
Software Mentions: 6
Published: almost 7 years ago

10.3389/fphar.2021.692442

Development, Testing, Parameterisation and Calibration of a Human PBPK Model for the Plasticiser, Di-(2-propylheptyl) Phthalate (DPHP) Using in Silico, in vitro and Human Biomonitoring Data
Cited by: 6
Author(s): Kevin McNally, Craig Sams, Alex Hogg, Annie Lumen, George Loizou
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pcbi.1008495

Confidence intervals by constrained optimization—An algorithm and software package for practical identifiability analysis in systems biology
Cited by: 5
Author(s): Ivan I. Borisov, Eugeniy Metelkin
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pcbi.1005642

Learning infectious disease epidemiology in a modern framework
Cited by: 3
Author(s): Andreas Handel
Software Mentions: 5
Published: about 7 years ago

10.1098/rspb.2019.3000

Hippopotamus are distinct from domestic livestock in their resource subsidies to and effects on aquatic ecosystems
Cited by: 18
Author(s): Frank O. Masese, Mary J. Kiplagat, Clara Romero González‐Quijano, Amanda L. Subalusky, Christopher L. Dutton, David M. Post, Gabriel Singer
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.ppat.1009528

Virus shedding kinetics and unconventional virulence tradeoffs
Cited by: 4
Author(s): Andrew R. Wargo, Gael Kurath, Robert J. Scott, Benjamin Kerr
Software Mentions: 5
Published: over 3 years ago

10.1186/s12918-015-0166-y

Reshaping the epigenetic landscape during early flower development: induction of attractor transitions by relative differences in gene decay rates
Cited by: 29
Author(s): José Dávila-Velderrain, Cuauhtémoc Calderón Villarreal, Elena Álvarez-Buylla
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pcbi.1006646

Epithelial stratification shapes infection dynamics
Cited by: 11
Author(s): Carmen Lía Murall, Robert Jackson, Ingeborg Zehbe, Nathalie Boulle, Michel Segondy, Samuel Alizon
Software Mentions: 5
Published: almost 6 years ago

10.3389/fvets.2020.558409

Socially vs. Privately Optimal Control of Livestock Diseases: A Case for Integration of Epidemiology and Economics
Cited by: 5
Author(s): Ângelo Mendes, Daniel T. Haydon, Emma McIntosh, Nick Hanley, Jo E.B. Halliday
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pntd.0005701

The interplay of climate, intervention and imported cases as determinants of the 2014 dengue outbreak in Guangzhou
Cited by: 30
Author(s): Qu Cheng, Qinlong Jing, Robert C. Spear, John M. Marshall, Zhicong Yang, Peng Gong
Software Mentions: 5
Published: over 7 years ago

10.1186/s12918-017-0423-3

SBpipe: a collection of pipelines for automating repetitive simulation and analysis tasks
Cited by: 9
Author(s): Piero Dalle Pezze, Nicolas Le Novère
Software Mentions: 4
Published: over 7 years ago

10.3389/fphar.2019.00005

Exposure of Infants to Isoniazid via Breast Milk After Maternal Drug Intake of Recommended Doses Is Clinically Insignificant Irrespective of Metaboliser Status. A Physiologically-Based Pharmacokinetic (PBPK) Modelling Approach to Estimate Drug Exposure of Infants via Breast-Feeding
Cited by: 12
Author(s): Estella Dora Germaine Garessus, Hans Mielke, Ursula Gundert‐Remy
Software Mentions: 4
Published: almost 6 years ago

10.1002/ece3.7178

Pliant pathogens: Estimating viral spread when confronted with new vector, host, and environmental conditions
Cited by: 3
Author(s): Anita J. Porath-Krause, Ryan M. Campbell, Lauren G. Shoemaker, Andrew Sieben, Alexander T. Strauss, Allison K. Shaw, Eric W. Seabloom, Elizabeth T. Borer
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12918-018-0596-4

Single molecules can operate as primitive biological sensors, switches and oscillators
Cited by: 10
Author(s): Rosa D. Hernansaiz-Ballesteros, Luca Cardelli, Attila Csikász‐Nagy
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1008837

Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model
Cited by: 36
Author(s): Gregory L. Watson, Dayuan Xiong, Lu Zhang, Joseph A. Zoller, John Shamshoian, Phillip Sundin, Teresa Bufford, Anne W. Rimoin, Marc A. Suchard, Christina M. Ramirez
Software Mentions: 4
Published: over 3 years ago

10.1083/jcb.201711048

A timer for analyzing temporally dynamic changes in transcription during differentiation in vivo
Cited by: 54
Author(s): David Bending, Paz Prieto Martín, Alina Paduraru, Catherine Ducker, Erik Marzaganov, Marie Laviron, Satsuki Kitano, Hitoshi Miyachi, Tessa Crompton, M. Ono
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0150568

Within-Host Models of High and Low Pathogenic Influenza Virus Infections: The Role of Macrophages
Cited by: 32
Author(s): Kasia A. Pawelek, Daniel Dor, Cristian Salmeron, Andreas Handel
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2019.00288

Web-gLV: A Web Based Platform for Lotka-Volterra Based Modeling and Simulation of Microbial Populations
Cited by: 24
Author(s): Bhusan K. Kuntal, Chetan Gadgil, Sharmila S. Mande
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008786

Physiologically based pharmacokinetic/pharmacodynamic model for the prediction of morphine brain disposition and analgesia in adults and children
Cited by: 9
Author(s): Laurens F. M. Verscheijden, Carlijn H. C. Litjens, Jan B. Koenderink, Ron H.J. Mathijssen, Marcel M. Verbeek, Saskia N. de Wildt, Frans G. M. Rüssel
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1005627

A data-driven modeling approach to identify disease-specific multi-organ networks driving physiological dysregulation
Cited by: 7
Author(s): W. T. Anderson, Danielle DeCicco, James S. Schwaber, Rajanikanth Vadigepalli
Software Mentions: 4
Published: over 7 years ago

10.1186/s12936-021-03726-x

The assembly effect: the connectedness between populations is a double‐edged sword for public health interventions
Cited by: 2
Author(s): Sai Thein Than Tun, Daniel M. Parker, Ricardo Águas, Lisa J. White
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-020-69218-1

Validity of dynamical analysis to characterize heart rate and oxygen consumption during effort tests
Cited by: 5
Author(s): Denis Mongin, C. Chabert, Adriana Uribe Caparros, Aurélie Collado, Éric Hermand, Olivier Hue, José Ramón Alvero Cruz, Delphine S. Courvoisier
Software Mentions: 4
Published: over 4 years ago

10.3389/fphar.2018.00508

A Computational Workflow for Probabilistic Quantitative in Vitro to in Vivo Extrapolation
Cited by: 18
Author(s): Kevin McNally, Alex Hogg, George Loizou
Software Mentions: 4
Published: over 6 years ago

10.1136/bmjopen-2020-041536

Estimating the COVID-19 epidemic trajectory and hospital capacity requirements in South West England: a mathematical modelling framework
Cited by: 22
Author(s): Ross Booton, Louis MacGregor, Lucy Vass, Katharine J Looker, Catherine Hyams, Philip Bright, Irasha Harding, Rajeka Lazarus, Fergus Hamilton, Daniel J. Lawson, León Danon, Adrian Pratt, Richard M. Wood, Ellen Brooks-Pollock, Katherine Mary Elizabeth Turner
Software Mentions: 4
Published: almost 4 years ago

10.3389/fphar.2021.625678

Modeling of SARS-CoV-2 Treatment Effects for Informed Drug Repurposing
Cited by: 11
Author(s): Charlotte Kern, Verena Schöning, Carlos Chaccour, Felix Hammann
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0088110

Modeling Malaria Infection and Immunity against Variant Surface Antigens in Príncipe Island, West Africa
Cited by: 1
Author(s): Cátia Bandeiras, Maria Jesus Trovoada, Lígia Antunes Gonçalves, Cláudio R. F. Marinho, Louise Turner, Lars Hviid, Carlos Penha‐Gonçalves, M. Gabriela M. Gomes
Software Mentions: 3
Published: almost 11 years ago

10.7717/peerj.8913

Understanding the spread of de novo and transmitted macrolide-resistance in Mycoplasma genitalium
Cited by: 7
Author(s): Dominique Cadosch, Victor García, Jørgen Skov Jensen, Nicola Low, Christian L. Althaus
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0231256

Modeling the Justinianic Plague: Comparing hypothesized transmission routes
Cited by: 12
Author(s): Lauren A. White, Lee Mordechai
Software Mentions: 3
Published: over 4 years ago

10.3389/fphys.2021.634510

A Kinetic Response Model for Standardized Regression Analyses of Inflammation-Triggered Hypothermic Body Temperature-Time Courses in Mice
Cited by: 3
Author(s): Hans H. Diebner, Sören Reinke, Angela Rösen‐Wolff, Stefan Winkler
Software Mentions: 3
Published: about 3 years ago

10.1098/rstb.2014.0306

How could preventive therapy affect the prevalence of drug resistance? Causes and consequences
Cited by: 17
Author(s): Amber Kunkel, Caroline Colijn, Marc Lipsitch, Ted Cohen
Software Mentions: 3
Published: over 9 years ago

10.1186/s12889-018-5709-x

High-resolution epidemic simulation using within-host infection and contact data
Cited by: 21
Author(s): Vān Kính Nguyễn, Rafael Mikolajczyk, Esteban A. Hernandez‐Vargas
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0209929

Rift Valley fever: An open-source transmission dynamics simulation model
Cited by: 5
Author(s): Robert D. Sumaye, Famke Jansen, Dirk Berkvens, Bernard De Baets, Eveline Geubels, Étienne Thiry, Meryam Krit
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pcbi.1007945

Early transmission of sensitive strain slows down emergence of drug resistance in Plasmodium vivax
Cited by: 1
Author(s): Mario J. C. Ayala, Daniel Antunes Maciel Villela
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1007585

Increasing growth rate slows adaptation when genotypes compete for diffusing resources
Cited by: 10
Author(s): Jeremy M. Chacón, Allison K. Shaw, William R. Harcombe
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-018-30244-9

On the use of functional responses to quantify emergent multiple predator effects
Cited by: 30
Author(s): Arnaud Sentis, David S. Boukal
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-78739-8

Tracking the early depleting transmission dynamics of COVID-19 with a time-varying SIR model
Cited by: 31
Author(s): Kian Boon Law, Kalaiarasu M Peariasamy, Balvinder Singh Gill, Sarbhan Singh, Bala Murali Sundram, Kamesh Rajendran, Sarat C. Dass, Yi Lin Lee, Pik Pin Goh, Hishamshah Mohd Ibrahim, Noor Hisham Abdullah
Software Mentions: 3
Published: almost 4 years ago

10.1128/mSystems.00186-18

Mobile Compensatory Mutations Promote Plasmid Survival
Cited by: 33
Author(s): Martin Zwanzig, Ellie Harrison, Michael A. Brockhurst, James P. J. Hall, Thomas U. Berendonk, Uta Berger
Software Mentions: 3
Published: over 5 years ago

10.3390/ijerph17155509

Modelling the Effectiveness of Epidemic Control Measures in Preventing the Transmission of COVID-19 in Malaysia
Cited by: 33
Author(s): Balvinder Singh Gill, Vivek Jason Jayaraj, Sarbhan Singh, Sumarni Mohd Ghazali, Young-Keun Cheong, Nuur Hafizah Md Iderus, Bala Murali Sundram, Tahir Aris, Hishamshah Mohd Ibrahim, Boon Hao Hong, Jane Labadin
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pmed.1002973

Opioid agonist treatment scale-up and the initiation of injection drug use: A dynamic modeling analysis
Cited by: 17
Author(s): Charles Marks, Annick Bórquez, Sonia Jain, Xiaoying Sun, Steffanie A. Strathdee, Richard S. Garfein, M‐J Milloy, Kora DeBeck, Javier Cepeda, Dan Werb, Natasha K. Martin
Software Mentions: 3
Published: almost 5 years ago

10.7554/eLife.32323

An incoherent feedforward loop facilitates adaptive tuning of gene expression
Cited by: 19
Author(s): Jae‐Hee Hong, Nathan Brandt, Farah Abdul-Rahman, Ally Yang, Terence J. Hughes, David Gresham
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.34848

Using paired serology and surveillance data to quantify dengue transmission and control during a large outbreak in Fiji
Cited by: 23
Author(s): Adam J. Kucharski, Mike Kama, Conall Watson, Maïté Aubry, Sebastian Funk, Alasdair D Henderson, Oliver J. Brady, Jessica Vanhomwegen, Jean-Claude Manuguerra, Colleen L Lau, W. John Edmunds, John Aaskov, Eric J. Nilles, Van-Mai Cao-Lormeau, Stephane Hué, Martin L. Hibberd
Software Mentions: 3
Published: over 6 years ago

10.1098/rsif.2020.0556

Nonlinear phenomena in models of the circadian clock
Cited by: 10
Author(s): Inge van Soest, Marta del Olmo, Christoph Schmal, Hanspeter Herzel
Software Mentions: 3
Published: about 4 years ago

10.1186/s12874-018-0541-7

A dynamic Bayesian Markov model for health economic evaluations of interventions in infectious disease
Cited by: 12
Author(s): Katrin Haeussler, Ardo van den Hout, Gianluca Baio
Software Mentions: 2
Published: over 6 years ago

10.1002/cpt.1707

Adherence and Population Pharmacokinetic Properties of Amodiaquine When Used for Seasonal Malaria Chemoprevention in African Children
Cited by: 17
Author(s): Junjie Ding, Matthew E. Coldiron, Bachir Assao, Ousmane Guindo, Daniel Blessborn, Markus Winterberg, Rebecca F. Grais, Alena Koščálová, Céline Langendorf, Joel Tärning
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pcbi.1009319

The interplay between vaccination and social distancing strategies affects COVID19 population-level outcomes
Cited by: 7
Author(s): Sharon Guerstein, Victoria Romeo-Aznar, Ma’ayan Dekel, Oren Miron, Nadav Davidovitch, Rami Puzis, Shai Pilosof
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pntd.0008789

How to choose the best control strategy? Mathematical models as a tool for pre-intervention evaluation on a macroparasitic disease
Cited by: 2
Author(s): Elisa Fesce, Claudia Romeo, Eleonora Chinchio, Nicola Ferrari
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pcbi.1006505

Exploring the impact of inoculum dose on host immunity and morbidity to inform model-based vaccine design
Cited by: 29
Author(s): Andreas Handel, Yan Li, Brian McKay, Kasia A. Pawelek, Veronika I. Zarnitsyna, Rustom Antia
Software Mentions: 2
Published: about 6 years ago

10.1186/s12879-019-4054-8

Phenotypic variations in persistence and infectivity between and within environmentally transmitted pathogen populations impact population-level epidemic dynamics
Cited by: 6
Author(s): Andrew F. Brouwer, Marisa C. Eisenberg, Nancy G. Love, Joseph N.S. Eisenberg
Software Mentions: 2
Published: over 5 years ago

10.1016/j.csbj.2018.10.013

Computational Modeling of Oxidative Stress in Fatty Livers Elucidates the Underlying Mechanism of the Increased Susceptibility to Ischemia/Reperfusion Injury
Cited by: 10
Author(s): Jana Schleicher, Uta Dahmen
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-74014-y

Ectothermy and cardiac shunts profoundly slow the equilibration of inhaled anaesthetics in a multi-compartment model
Cited by: 8
Author(s): Catherine J. Williams, Christian Lind Malte, Hans Malte, Mads F. Bertelsen, Tobias Wang
Software Mentions: 2
Published: about 4 years ago

10.1186/s13062-016-0114-9

Numerical simulation of vascular tumour growth under antiangiogenic treatment: addressing the paradigm of single-agent bevacizumab therapy with the use of experimental data
Cited by: 14
Author(s): Katerina D. Argyri, Dimitra D. Dionysiou, Fay Misichroni, Georgios S. Stamatakos
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-78900-3

Identifying likely transmissions in Mycobacterium bovis infected populations of cattle and badgers using the Kolmogorov Forward Equations
Cited by: 2
Author(s): Gianluigi Rossi, Joseph Crispell, Daniel Balaz, Samantha Lycett, Clare H. Benton, Richard J. Delahay, Rowland R. Kao
Software Mentions: 2
Published: almost 4 years ago

10.3389/fvets.2019.00242

PPR Control in a Sahelian Setting: What Vaccination Strategy for Mauritania?
Cited by: 9
Author(s): Ahmed Salem ElArbi, Yaghouba Kane, Raphaëlle Métras, Pachka Hammami, Mamadou Ciss, Assane Bèye, Renaud Lancelot, Adama Diallo, Andrea Apolloni
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87418-1

Understanding drivers of wild oyster population persistence
Cited by: 3
Author(s): Mickaël Teixeira Alves, Nick Taylor, Hannah J. Tidbury
Software Mentions: 2
Published: over 3 years ago

10.1242/dev.185827

The Pax6 master control gene initiates spontaneous retinal development via a self-organising Turing network
Cited by: 6
Author(s): Timothy Grocott, Estefanía Lozano-Velasco, Gi Fay Mok, Andrea Münsterberg
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0102367

Temperature and Photoperiod Interactions with Phosphorus-Limited Growth and Competition of Two Diatoms
Cited by: 16
Author(s): Tom Shatwell, Jan Köhler, Andreas Nicklisch
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2015.00257

Ebola virus infection modeling and identifiability problems
Cited by: 42
Author(s): Vān Kính Nguyễn, Sebastian C. Binder, Alessandro Boianelli, Michael Meyer–Hermann, Esteban A. Hernandez‐Vargas
Software Mentions: 2
Published: over 9 years ago

10.1002/prp2.574

PK/PD modeling of 5‐hydroxytryptophan (5‐HTP) challenge test with cortisol measurement in serum and saliva
Cited by: 0
Author(s): Guoyan Zheng, Gabriël Jacobs, Hans van Pelt, Joop M. A. van Gerven, Jacobus Burggraaf, Wei Zhao
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pntd.0005956

Epidemiological consequences of immune sensitisation by pre-exposure to vector saliva
Cited by: 5
Author(s): Tsukushi Kamiya, Megan A. Greischar, Nicole Mideo
Software Mentions: 2
Published: about 7 years ago

10.3389/fphys.2017.00616

Optimization of an In silico Cardiac Cell Model for Proarrhythmia Risk Assessment
Cited by: 117
Author(s): Sara Dutta, Kelly C. Chang, Kylie A. Beattie, Jiansong Sheng, Phu N. Tran, Wendy Wu, Min Wu, David G. Strauss, Thomas Colatsky, Zhihua Li
Software Mentions: 2
Published: about 7 years ago

10.1016/j.jhin.2018.05.007

Cost-effectiveness of interventions to improve hand hygiene in healthcare workers in middle-income hospital settings: a model-based analysis
Cited by: 10
Author(s): Nantasit Luangasanatip, Maliwan Hongsuwan, Yoel Lubell, Direk Limmathurotsakul, Pramot Srisamang, Nicholas P. J. Day, Nicholas Graves, Ben S. Cooper
Software Mentions: 2
Published: about 6 years ago

10.1016/j.ijpara.2019.06.008

Reduced egg shedding in nematode-resistant ewes and projected epidemiological benefits under climate change
Cited by: 11
Author(s): Hannah Rose Vineer, Peter Baber, Thomas A. White, Eric R. Morgan
Software Mentions: 2
Published: about 5 years ago

10.1016/j.epidem.2021.100460

Competition between RSV and influenza: Limits of modelling inference from surveillance data
Cited by: 9
Author(s): Naomi R. Waterlow, Stefan Flasche, Amanda Minter, Rosalind M Eggo
Software Mentions: 2
Published: over 3 years ago

10.3390/pharmaceutics13081109

Optimization of the Transwell® System for Assessing the Dissolution Behavior of Orally Inhaled Drug Products through In Vitro and In Silico Approaches
Cited by: 5
Author(s): Elham Amini, Abhinav Kurumaddali, Sharvari Bhagwat, S. M. Berger, Günther Hochhaus
Software Mentions: 2
Published: over 3 years ago

10.1186/s13071-016-1292-0

Feasibility of eliminating visceral leishmaniasis from the Indian subcontinent: explorations with a set of deterministic age-structured transmission models
Cited by: 44
Author(s): Epke A. Le Rutte, Luc E. Coffeng, D.M. Bontje, Epco Hasker, Jorge Postigo, Daniel Argaw, Marleen Boelaert, Sake J. de Vlas
Software Mentions: 2
Published: almost 9 years ago

10.3390/ijerph18010076

Targeting Malaria Hotspots to Reduce Transmission Incidence in Senegal
Cited by: 1
Author(s): Kankoé Sallah, Roch Giorgi, El Hadj Bâ, Martine Piarroux, Renaud Piarroux, Badara Cissé, Jean Gaudart
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1004695

Integrating Transgenic Vector Manipulation with Clinical Interventions to Manage Vector-Borne Diseases
Cited by: 12
Author(s): Kenichi W. Okamoto, Fred Gould, Alun L. Lloyd
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0228942

Disease burden and seasonal impact of improving rotavirus vaccine coverage in the United States: A modeling study
Cited by: 5
Author(s): Chin-En Ai, Molly Steele, Benjamin A. Lopman
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijerph18105334

Spatial Uncertainty in Modeling Inhalation Exposure to Volatile Organic Compounds in Response to the Application of Consumer Spray Products
Cited by: 2
Author(s): Yerin Jung, Yoonsub Kim, Hwi Soo Seol, Sang-Kwon Lee, Jung Hwan Kwon
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2017.01140

A Novel Approach to Predict the Growth of Staphylococcus aureus on Rice Cake
Cited by: 10
Author(s): Jun Wang, Shigenobu Koseki, Mi-Ja Chung, Deog‐Hwan Oh
Software Mentions: 2
Published: over 7 years ago

10.1093/jxb/erz573

Thermography methods to assess stomatal behaviour in a dynamic environment
Cited by: 21
Author(s): Silvère Vialet-Chabrand, Tracy Lawson
Software Mentions: 2
Published: almost 5 years ago

10.1126/sciadv.abd2848

Seasonal dietary changes increase the abundances of savanna herbivore species
Cited by: 13
Author(s): A. Carla Staver, Gareth P. Hempson
Software Mentions: 2
Published: about 4 years ago

10.1093/jxb/ery308

Environmental triggers for photosynthetic protein turnover determine the optimal nitrogen distribution and partitioning in the canopy
Cited by: 16
Author(s): Yi-Chen Pao, Tsu‐Wei Chen, Dany Pascal Moualeu-Ngangue, Hartmut Stützel
Software Mentions: 2
Published: over 6 years ago

10.1038/srep39494

A four-compartment PBPK heart model accounting for cardiac metabolism - model development and application
Cited by: 13
Author(s): Zofia Tylutki, Sebastian Polak
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep42135

Acetate fluxes in Escherichia coli are determined by the thermodynamic control of the Pta-AckA pathway
Cited by: 109
Author(s): Brice Enjalbert, Pierre Millard, Mickael Dinclaux, Jean‐Charles Portais, Fabien Létisse
Software Mentions: 2
Published: almost 8 years ago

10.1128/JCM.00179-17

Predicting the Ability of Preclinical Diagnosis To Improve Control of Farm-to-Farm Foot-and-Mouth Disease Transmission in Cattle
Cited by: 21
Author(s): Noel Nelson, David Paton, Simon Gubbins, Claire Colenutt, Emma Brown, Sophia Hodgson, José L. Gonzáles
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-72566-7

Duration of cold exposure defines the rate of reactivation of a perennial FLC orthologue via H3K27me3 accumulation
Cited by: 6
Author(s): Hiroaki Nishio, Koji Iwayama, Hiroshi Kudoh
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-021-82077-8

Computer modeling of whole-cell voltage-clamp analyses to delineate guidelines for good practice of manual and automated patch-clamp
Cited by: 13
Author(s): Jérôme Montnach, Maxime Lorenzini, Adrien Lesage, Isabelle Simon, Sébastien Nicolas, Eléonore Moreau, Céline Marionneau, Isabelle Baró, Michel De Waard, Gildas Loussouarn
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-86873-0

A compartmental model that predicts the effect of social distancing and vaccination on controlling COVID-19
Cited by: 58
Author(s): Mohammadali Dashtbali, Mehdi Mirzaie
Software Mentions: 1
Published: over 3 years ago

10.3390/toxins13070458

Characterization of the Domoic Acid Uptake Mechanism of the Mussel (Mytilus galloprovincialis) Digestive Gland
Cited by: 4
Author(s): Juan Blanco, Carmen Mariño, Helena Martín, Gonzalo Álvarez, Araceli E. Rossignoli
Software Mentions: 1
Published: over 3 years ago

10.1128/mBio.00796-17

Vaccine Effects on Heterogeneity in Susceptibility and Implications for Population Health Management
Cited by: 28
Author(s): Kate E. Langwig, Andrew R. Wargo, Darbi R. Jones, Jessie R. Viss, Barbara J. Rutan, Nicholas Egan, Pedro Sá-Guimarães, Min Sun Kim, Gael Kurath, M. Gabriela M. Gomes, Marc Lipsitch
Software Mentions: 1
Published: almost 7 years ago

10.1038/ismej.2017.193

Cyanobacterial photosynthesis under sulfidic conditions: insights from the isolate Leptolyngbya sp. strain hensonii
Cited by: 36
Author(s): Trinity L. Hamilton, Judith M. Klatt, Dirk de Beer, Jennifer L. Macalady
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijerph14070765

Modeling Nitrogen Dynamics in a Waste Stabilization Pond System Using Flexible Modeling Environment with MCMC
Cited by: 4
Author(s): Hussnain Mukhtar, Yu‐Pin Lin, Oleg V. Shipin, Joy R. Petway
Software Mentions: 1
Published: over 7 years ago

10.3390/ijerph16122207

A Population Dynamic Model to Assess the Diabetes Screening and Reporting Programs and Project the Burden of Undiagnosed Diabetes in Thailand
Cited by: 6
Author(s): Wiriya Mahikul, Lisa J. White, Kittiyod Poovorawan, Ngamphol Soonthornworasiri, Pataporn Sukontamarn, Phetsavanh Chanthavilay, Wirichada Pan-ngum, Graham F. Medley
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.66601

Modeling the impact of racial and ethnic disparities on COVID-19 epidemic dynamics
Cited by: 22
Author(s): C Kévin, Tigist F. Menkir, Stephen M Kissler, Yonatan H. Grad, Marc Lipsitch
Software Mentions: 1
Published: over 3 years ago

10.1098/rsif.2020.0655

A general mathematical method for predicting spatio-temporal correlations emerging from agent-based models
Cited by: 4
Author(s): Otso Ovaskainen, Panu Somervuo, Dmitri Finkelshtein
Software Mentions: 1
Published: about 4 years ago

10.1098/rsif.2015.0069

The dynamic balance of import and export of zinc in Escherichia coli suggests a heterogeneous population response to stress
Cited by: 20
Author(s): Hiroki Takahashi, Taku Oshima, Jon L. Hobman, Neil Doherty, Selina R. Clayton, Mudassar Iqbal, Philip J. Hill, Toru Tobe, Nagahisa Ogasawara, Shigehiko Kanaya, Dov J. Stekel
Software Mentions: 1
Published: over 9 years ago

10.1016/j.jtbi.2019.05.017

The impact of behavioral interventions on co-infection dynamics: An exploration of the effects of home isolation
Cited by: 2
Author(s): Diana M. Hendrickx, Steven Abrams, Niel Hens
Software Mentions: 1
Published: about 5 years ago

10.3390/antibiotics9070408

Kinetic Fingerprinting Links Bacteria-Phage Interactions with Emergent Dynamics: Rapid Depletion of Klebsiella pneumoniae Indicates Phage Synergy
Cited by: 4
Author(s): Holger Loessner, Insea Schlattmeier, Marie Anders-Maurer, Isabelle Bekeredjian‐Ding, Christine Rohde, Johannes Wittmann, Cornelia Pokalyuk, Oleg Krut, Christel Kamp
Software Mentions: 1
Published: over 4 years ago

10.1007/s42081-021-00107-1

Simple SIR models with Markovian control
Cited by: 0
Author(s): Krzysztof Bartoszek, Wojciech Bartoszek, Michał Krzemiński
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12916-019-1288-7

Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh
Cited by: 30
Author(s): Flavio Finger, Sebastian Funk, Kate White, Ruby Siddiqui, W. John Edmunds, Adam J. Kucharski
Software Mentions: 1
Published: over 5 years ago

10.1186/s12874-015-0106-y

Early diagnosis of gestational trophoblastic neoplasia based on trajectory classification with compartment modeling
Cited by: 1
Author(s): Claire Burny, Muriel Rabilloud, François Golfier, Jérôme Massardier, Touria Hajri, Anne-Marie Schott, Fabien Subtil
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12889-021-10676-1

Behavioral changes before lockdown and decreased retail and recreation mobility during lockdown contributed most to controlling COVID-19 in Western countries
Cited by: 17
Author(s): Koen Deforche, Jürgen Vercauteren, Viktor Müller, Anne‐Mieke Vandamme
Software Mentions: 1
Published: over 3 years ago

Projects: cran: deSolve

Papers Mentioning deSolve 179