Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1008458

https://doi.org/10.1371/journal.pgen.1008458

Microbial phenotypic heterogeneity in response to a metabolic toxin: Continuous, dynamically shifting distribution of formaldehyde tolerance in Methylobacterium extorquens populations

Cited by: 23
Author(s): Jessica A. Lee, Siavash Riazi, Shahla Nemati, Jannell V. Bazurto, Andreas E. Vasdekis, Benjamin J. Ridenhour, Christopher H. Remien, Christopher J. Marx
Published: about 5 years ago

Software Mentions 10

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: flowCore
flowCore: Basic structures for flow cytometry data
Papers that mentioned: 109
cran: deSolve
Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')
Papers that mentioned: 179
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: lsmeans
Least-Squares Means
Papers that mentioned: 758
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: ReacTran
Reactive Transport Modelling in 1d, 2d and 3d
Papers that mentioned: 6
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: scikit-image
Image processing in Python
Papers that mentioned: 195
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105