Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.58931

https://doi.org/10.7554/eLife.58931

Recurrent evolution of high virulence in isolated populations of a DNA virus

Cited by: 11
Author(s): Tom Hill, Robert L. Unckless
Published: about 4 years ago

Software Mentions 6

cran: deSolve
Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')
Papers that mentioned: 179
cran: LDheatmap
Graphical Display of Pairwise Linkage Disequilibria Between SNPs
Papers that mentioned: 66
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: Sickle
A lightweight OAI client library for Python
Papers that mentioned: 740
pypi: TreeTime
TreeTime is a to-do list manager, test report tool, project manager, family ancestry editor,mind-mapping tool, etc. Using TreeTime you can categorise and organise any data in tree structures.You can define several trees, each with a different structure, on the same data. You can use functions(sums, ratios and means) recursively up the branches of a tree.
Papers that mentioned: 82
pypi: tsinfer
Infer tree sequences from genetic variation data.
Papers that mentioned: 6