Ecosyste.ms: Papers

10.1186/1471-2105-14-S1-S1

Visualization of protein interaction networks: problems and solutions
Cited by: 70
Author(s): Giuseppe Agapito, Pietro Hiram Guzzi, Mario Cannataro
Software Mentions: 7
Published: over 11 years ago

10.1093/jxb/erz546

Transcriptional and biochemical analyses of gibberellin expression and content in germinated barley grain
Cited by: 16
Author(s): Natalie S. Betts, Christoph Dockter, Oliver Berkowitz, Helen Collins, Michelle Hooi, Qiongxian Lu, Rachel A. Burton, Vincent Bulone, Birgitte Skadhauge, James Whelan, Geoffrey B. Fincher
Software Mentions: 5
Published: over 4 years ago

10.1186/1471-2105-8-59

Bioclipse: an open source workbench for chemo- and bioinformatics
Cited by: 112
Author(s): Ola Spjuth, Tobias Helmus, Egon Willighagen, Stefan Kühn, Martin Eklund, Johannes Wagener, Peter Murray‐Rust, Christoph Steinbeck, Jarl E. S. Wikberg
Software Mentions: 4
Published: over 17 years ago

10.1186/1471-2105-12-71

LabKey Server: An open source platform for scientific data integration, analysis and collaboration
Cited by: 121
Author(s): Elizabeth Nelson, Britt Piehler, Josh Eckels, Adam Rauch, Matthew Bellew, Peter S. Hussey, Sarah Ramsay, Cory Nathe, Karl Lum, Kevin Krouse, David L. Stearns, B. Connolly, Tom Skillman, Mark Igra
Software Mentions: 4
Published: about 13 years ago

10.1186/2044-5040-1-23

Novel mutations in NEB cause abnormal nebulin expression and markedly impaired muscle force generation in severe nemaline myopathy
Cited by: 51
Author(s): Michael W. Lawlor, Coen A.C. Ottenheijm, Vilma-Lotta Lehtokari, Kiyomi Cho, Katarina Pelin, Carina Wallgren‐Pettersson, Henk Granzier, Alan H. Beggs
Software Mentions: 4
Published: almost 13 years ago

10.3390/s141222342

Performance Improvement in Geographic Routing for Vehicular Ad Hoc Networks
Cited by: 50
Author(s): Omprakash Kaiwartya, Sushil Kumar, D. K. Lobiyal, Abdul Hanan Abdullah, Ahmed Nazar Hassan
Software Mentions: 3
Published: over 9 years ago

10.3390/genes3030545

Next Generation Sequence Analysis and Computational Genomics Using Graphical Pipeline Workflows
Cited by: 47
Author(s): Federica Torri, Ivo D. Dinov, Alen Zamanyan, Sam Hobel, Alex Genco, Petros Petrosyan, Andrew P. Clark, Zhizhong Liu, Paul Eggert, Jonathan Pierce, James A. Knowles, Joseph Ames, Carl Kesselman, Arthur W. Toga, Steven G. Potkin, Marquis P. Vawter, Fabìo Macciardi
Software Mentions: 3
Published: almost 12 years ago

10.3389/frobt.2018.00133

Authenticity, Interactivity, and Collaboration in VR Learning Games
Cited by: 9
Author(s): Meredith Thompson, Annie Wang, Dan Roy, Eric Klopfer
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2021.641325

Genes That Mediate Starch Metabolism in Developing and Germinated Barley Grain
Cited by: 10
Author(s): Helen Collins, Natalie S. Betts, Christoph Dockter, Oliver Berkowitz, Ilka Braumann, José A. Cuesta-Seijo, Birgitte Skadhauge, James Whelan, Vincent Bulone, Geoffrey B. Fincher
Software Mentions: 3
Published: over 3 years ago

10.1186/s12859-021-04039-1

vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration
Cited by: 11
Author(s): Robert H. Dolin, Shaileshbhai Revabhai Gothi, Aziz A. Boxwala, Bret S.E. Heale, Ammar Husami, James B. Jones, Himanshu Khangar, Shubham Londhe, Frank Naeymi-Rad, Soujanya Rao, Barbara Rapchak, James Shalaby, Varun Suraj, Ning Xie, Srikar Chamala, Gil Alterovitz
Software Mentions: 3
Published: over 3 years ago

10.1016/j.jsb.2013.09.021

Web-based visualisation and analysis of 3D electron-microscopy data from EMDB and PDB
Cited by: 32
Author(s): Ingvar Lagerstedt, William J. Moore, Ardan Patwardhan, Eduardo Sanz-García, C. Best, Jason R. Swedlow, Gerard J. Kleywegt
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0058005

Gut Microbiota Patterns Associated with Colonization of Different Clostridium difficile Ribotypes
Cited by: 60
Author(s): Jure Škraban, Sašo Džeroski, Bernard Ženko, Domen Mongus, Simon Gangl, Maja Rupnik
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0098472

Taxonomic Position and Phylogeny of the Genus Vargasiella (Orchidaceae, Vandoideae) Based on Molecular and Morphological Evidence
Cited by: 3
Author(s): Dariusz L. Szlachetko, Marcin Górniak, Marta Kolanowska, Joanna Mytnik‐Ejsmont, Agnieszka K. Kowalkowska, Piotr Rutkowski, Tomasz Koliński
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0027368

Defining the Role of Essential Genes in Human Disease
Cited by: 85
Author(s): Jonathan E. Dickerson, Ana Zhu, David L. Robertson, Kathryn E. Hentges
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0048855

Deep Sequencing Reveals Differences in the Transcriptional Landscapes of Fibers from Two Cultivated Species of Cotton
Cited by: 40
Author(s): Jean-Marc Lacape, Michel Claverie, Ramón Vidal, Marcelo Falsarella Carazzolle, Gonçalo Amarante Guimarães Pereira, Manuel Ruiz, M. Fleur du Pré, Danny Llewellyn, Yves Al-Ghazi, John Jacobs, Alexis Dereeper, Stéphanie Huguet, Marc Giband, Claire Lanaud
Software Mentions: 3
Published: over 11 years ago

10.1186/1471-2164-15-563

Hemolymph proteome changes during worker brood development match the biological divergences between western honey bees (Apis mellifera) and eastern honey bees (Apis cerana)
Cited by: 28
Author(s): Feng Mao, Haitham Ramadan, Bin Han, Fang Yu, Jianke Li
Software Mentions: 3
Published: almost 10 years ago

10.1093/bib/bbaa296

Text mining approaches for dealing with the rapidly expanding literature on COVID-19
Cited by: 66
Author(s): Lucy Lu Wang, Kyle Lo
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pntd.0000115

Characterization of the Entamoeba histolytica Ornithine Decarboxylase-Like Enzyme
Cited by: 16
Author(s): Anupam Jhingran, Prasad K. Padmanabhan, Sushma Singh, Krishanpal Anamika, Abhijeet Bakre, Sudha Bhattacharya, Alok Bhattacharya, Narayanaswamy Srinivasan, Rentala Madhubala
Software Mentions: 3
Published: over 16 years ago

10.1186/bcr2926

Identification of germline alterations of the mad homology 2 domain of SMAD3 and SMAD4 from the Ontario site of the breast cancer family registry (CFR)
Cited by: 17
Author(s): Eric Tram, Irada Ibrahim‐Zada, Laurent Briollais, Julia A. Knight, Irene L. Andrulis, Hilmi Özçelik
Software Mentions: 3
Published: almost 13 years ago

10.3390/ijms22168802

Pattern of TAAR5 Expression in the Human Brain Based on Transcriptome Datasets Analysis
Cited by: 9
Author(s): Anastasia N. Vaganova, Ramilya Z. Murtazina, T. S. Shemyakova, Andrey D. Prjibelski, Nataliia V. Katolikova, Raul R. Gainetdinov
Software Mentions: 3
Published: almost 3 years ago

10.1093/bioinformatics/bty742

MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians
Cited by: 41
Author(s): K. Joeri van der Velde, Floris Imhann, Bart Charbon, Chao Pang, David van Enckevort, Mariska Slofstra, Ruggero Barbieri, Rudi Alberts, Dennis Hendriksen, Fleur D.L. Kelpin, Mark de Haan, Tommy de Boer, Sido Haakma, Connor Stroomberg, Salome Scholtens, Gert-Jan van de Geijn, Eleonora A. M. Festen, Rinse K. Weersma, Morris A. Swertz
Software Mentions: 3
Published: almost 6 years ago

10.3390/ijms21020547

Open Data for Differential Network Analysis in Glioma
Cited by: 8
Author(s): Claire Jean-Quartier, Fleur Jeanquartier, Andreas Holzinger
Software Mentions: 3
Published: over 4 years ago

10.3390/nu12102952

Co-Administration of Propionate or Protocatechuic Acid Does Not Affect DHA-Specific Transcriptional Effects on Lipid Metabolism in Cultured Hepatic Cells
Cited by: 2
Author(s): Francesca Danesi, Bjørk Ditlev Larsen, Mattia Di Nunzio, Ronni Nielsen, Dario de Biase, Veronica Valli, Susanne Mandrup, Alessandra Bordoni
Software Mentions: 2
Published: over 3 years ago

10.1107/S2056989020005368

Obtaining the best results: aspects of data collection, model finalization and interpretation of results in small-molecule crystal-structure determination
Cited by: 9
Author(s): Anthony Linden
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2105-11-362

Use of historic metabolic biotransformation data as a means of anticipating metabolic sites using MetaPrint2D and Bioclipse
Cited by: 67
Author(s): Lars Carlsson, Ola Spjuth, Sam Adams, Robert C. Glen, Scott Boyer
Software Mentions: 2
Published: almost 14 years ago

10.1186/s12913-021-06811-8

Expectations and needs of socially vulnerable patients for navigational support of primary health care services
Cited by: 1
Author(s): Carine Sandrine Ngo Bikoko Piemeu, Christine Loignon, E. J. Dionne, Andrée-Anne Paré-Plante, Jeannie Haggerty, Mylaine Bréton
Software Mentions: 2
Published: over 2 years ago

10.1186/s12870-019-1723-0

Genome-wide association of barley plant growth under drought stress using a nested association mapping population
Cited by: 57
Author(s): Anh Van Pham, Andreas Maurer, Klaus Pillen, Chris Brien, Kate Dowling, Bettina Berger, J. Eglinton, Timothy J. March
Software Mentions: 2
Published: about 5 years ago

10.1186/1756-3305-5-161

Molecular characterization of the hexose transporter gene in benznidazole resistant and susceptible populations of Trypanosoma cruzi
Cited by: 5
Author(s): Paula Fernandes dos Santos, Jerônimo C. Ruiz, Rodrigo Pedro Soares, Douglas S. Moreira, Antônio Mauro Rezende, Edson Luiz Folador, Guilherme Oliveira, Álvaro J. Romanha, Silvane Maria Fonseca Murta
Software Mentions: 2
Published: almost 12 years ago

10.1007/s12253-018-0418-4

Aspects of Modern Biobank Activity – Comprehensive Review
Cited by: 72
Author(s): Wiktor Paskal, Adriana M. Paskal, Tomasz Dębski, Maciej Gryziak, Janusz Jaworowski
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pcbi.1000108

Unraveling Protein Networks with Power Graph Analysis
Cited by: 113
Author(s): Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pone.0092817

Interference of Co-Amplified Nuclear Mitochondrial DNA Sequences on the Determination of Human mtDNA Heteroplasmy by Using the SURVEYOR Nuclease and the WAVE HS System
Cited by: 3
Author(s): Hsiu-Chuan Yen, Shiue-Li Li, Wei-Chien Hsu, Petrus Tang
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0133894

Molecular Expression Profile Reveals Potential Biomarkers and Therapeutic Targets in Canine Endometrial Lesions
Cited by: 21
Author(s): Fabiana Azevedo Voorwald, Fábio Albuquerque Marchi, Rolando A R Villacis, Carlos Eduardo Fonseca-Alves, Gilson Hélio Toniollo, Renée Laufer Amorim, Sandra A. Drigo, Sílvia Regina Rogatto
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0203843

4C-seq characterization of Drosophila BEAF binding regions provides evidence for highly variable long-distance interactions between active chromatin
Cited by: 11
Author(s): Shraddha Shrestha, Dong-Ha Oh, J. Keller McKowen, Maheshi Dassanayake, Craig M. Hart
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0101432

A Systems Biology-Based Approach to Uncovering the Molecular Mechanisms Underlying the Effects of Dragon's Blood Tablet in Colitis, Involving the Integration of Chemical Analysis, ADME Prediction, and Network Pharmacology
Cited by: 37
Author(s): Haiyu Xu, Yanqiong Zhang, Yun Lei, Xiumei Gao, Huaqiang Zhai, Na Lin, Shi-Huan Tang, Rixin Liang, Yan Ma, Defeng Li, Yi Zhang, Guoding Zhu, Hongjun Yang, Luqi Huang
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0247914

Understanding the impact and causes of ‘failure to attend’ on continuity of care for patients with chronic conditions
Cited by: 5
Author(s): Amy‐Louise Byrne, Adele Baldwin, Clare Harvey, Janie Brown, Eileen Willis, Desley Hegney, Bridget Ferguson, Jenni Judd, Doug Kynaston, Rachel Forrest, David Heard, Sandra L. McLellan, Shona Thompson, Janine Palmer
Software Mentions: 2
Published: over 3 years ago

10.3389/fncir.2017.00009

Mapping and Analysis of the Connectome of Sympathetic Premotor Neurons in the Rostral Ventrolateral Medulla of the Rat Using a Volumetric Brain Atlas
Cited by: 34
Author(s): Bowen Dempsey, Le Shen, Anita J. Turner, Phillip Bokiniec, Radhika Ramadas, Jan G. Bjaalie, Clément Menuet, Rachael L. Neve, Andrew M. Allen, Ann K. Goodchild, Simon McMullan
Software Mentions: 2
Published: over 7 years ago

10.3389/fninf.2013.00018

NeuroLex.org: an online framework for neuroscience knowledge
Cited by: 66
Author(s): Stephen Larson, Maryann E. Martone
Software Mentions: 2
Published: over 11 years ago

10.3389/fpls.2017.01872

Morphology, Carbohydrate Distribution, Gene Expression, and Enzymatic Activities Related to Cell Wall Hydrolysis in Four Barley Varieties during Simulated Malting
Cited by: 23
Author(s): Natalie S. Betts, Laura G. Wilkinson, Shi F. Khor, Neil J. Shirley, Finn Lok, Birgitte Skadhauge, Rachel A. Burton, Geoffrey B. Fincher, Helen Collins
Software Mentions: 2
Published: over 6 years ago

10.3389/fpsyg.2021.594255

How Packaging of Information in Conversation Is Impacted by Communication Medium and Restrictions
Cited by: 1
Author(s): Sarah A. Bibyk, Leslie M. Blaha, Christopher W. Myers
Software Mentions: 2
Published: about 3 years ago

10.3390/insects8020038

Identification of Conditions for Successful Aphid Control by Ladybirds in Greenhouses
Cited by: 35
Author(s): Eric W. Riddick
Software Mentions: 2
Published: about 7 years ago

10.3390/jcm9072125

The Community Oncology and Academic Medical Center Alliance in the Age of Precision Medicine: Cancer Genetics and Genomics Considerations
Cited by: 7
Author(s): Marilena Melas, Shanmuga Subbiah, Siamak Saadat, Swapnil Rajurkar, Kevin McDonnell
Software Mentions: 2
Published: almost 4 years ago

10.1038/srep29823

Systematic investigation of transcription factors critical in the protection against cerebral ischemia by Danhong injection
Cited by: 31
Author(s): Junying Wei, Yanqiong Zhang, Qiang Jia, Mingwei Liu, Defeng Li, Yi Zhang, Lei Song, Yanzhen Hu, Minghua Xian, Hongjun Yang, Chen Ding, Lusheng Huang
Software Mentions: 2
Published: almost 8 years ago

10.7150/ijbs.39534

Gene signature predictive of hepatocellular carcinoma patient response to transarterial chemoembolization
Cited by: 14
Author(s): Valerie Fako, Sean P. Martin, Yotsawat Pomyen, Anuradha Budhu, Jittiporn Chaisaingmongkol, S Franck, Joyce Man‐Fong Lee, Irene Oi‐Lin Ng, Tan–To Cheung, Xiyang Wei, Niya Liu, Junfang Ji, Lei Zhao, Zhaogang Liu, Hongyan Jia, Zhao‐You Tang, Lun–Xiu Qin, Roman Kloeckner, Jens U. Marquardt, Tim F. Greten, Xin Wei Wang
Software Mentions: 2
Published: over 5 years ago

10.2196/humanfactors.7287

A Web-Based Graphical Food Frequency Assessment System: Design, Development and Usability Metrics
Cited by: 14
Author(s): Rodrigo Zenun Franco, Balqees Alawadhi, Rosalind Fallaize, Julie A. Lovegrove, Faustina Hwang
Software Mentions: 2
Published: about 7 years ago

10.1107/S205979832100334X

Optimized cryo-EM data-acquisition workflow by sample-thickness determination
Cited by: 19
Author(s): Jan Rheinberger, Gert T. Oostergetel, Guenter P. Resch, Cristina Paulino
Software Mentions: 2
Published: about 3 years ago

10.3390/ma14195853

Comparative Evaluation of the Penetration Depth into Dentinal Tubules of Three Endodontic Irrigants
Cited by: 6
Author(s): Luciano Giardino, Eugenio Pedullà, Francesco Cavani, Francesca Bisciotti, Luca Giannetti, Vittorio Checchi, Daniele Angerame, Ugo Consolo, Luigi Generali
Software Mentions: 1
Published: over 2 years ago

10.1186/1476-4598-13-253

Comprehensive analysis of microRNA-regulated protein interaction network reveals the tumor suppressive role of microRNA-149 in human hepatocellular carcinoma via targeting AKT-mTOR pathway
Cited by: 75
Author(s): Yanqiong Zhang, Xiaodong Guo, Lei Xiong, Lingxiang Yu, Zhiwei Li, Qiuyan Guo, Zhiyan Li, Boan Li, Na Lin
Software Mentions: 1
Published: over 9 years ago

10.3390/molecules25092254

Wide-Antimicrobial Spectrum of Picolinium Salts
Cited by: 6
Author(s): Sarka Salajkova, Markéta Benková, Jan Marek, Radek Sleha, Lukáš Prchal, David Maliňák, Rafael Doležal, Kristina Sepčić, Nina Gunde‐Cimerman, Kamil Kuča, Ondřej Soukup
Software Mentions: 1
Published: about 4 years ago

10.1186/s13024-019-0313-9

Network approach identifies Pacer as an autophagy protein involved in ALS pathogenesis
Cited by: 20
Author(s): Sebastián Beltrán, Melissa Nassif, Emiliano Vicencio, Javiera Arcos, Luis Labrador, Bastián I. Cortés, Cristian Cortéz, Cristian A. Bergmann, Sergio Espinoza, Maria Fernanda Hernandez, José Manuel Matamala, Leslie Bargsted, Soledad Matus, Diego Rojas‐Rivera, Mathieu J.M. Bertrand, Danilo B. Medinas, Claudio Hetz, Patrício Manque, Ute Woehlbier
Software Mentions: 1
Published: about 5 years ago

10.1186/s13024-015-0015-x

Genetically-controlled Vesicle-Associated Membrane Protein 1 expression may contribute to Alzheimer’s pathophysiology and susceptibility
Cited by: 11
Author(s): Daniel Sevlever, Fanggeng Zou, Li Ma, Sebastian Carrasquillo, Michael Crump, Oliver J. Culley, Talisha A. Hunter, Gina Bisceglio, Linda H. Younkin, Mariet Allen, Minerva M. Carrasquillo, Sigrid Botne Sando, Jan Aasly, Dennis W. Dickson, Neill R. Graff‐Radford, Ronald C. Petersen, F. Deák, Olivia Belbin
Software Mentions: 1
Published: about 9 years ago

10.1186/1750-1326-6-33

Rheumatoid arthritis-associated polymorphisms are not protective against Alzheimer's disease
Cited by: 3
Author(s): Christopher R Simmons, Fanggeng Zou, Steven G. Younkin, Steven Estus
Software Mentions: 1
Published: about 13 years ago

10.18699/VJ20.642

The content of yellow pigments in durum wheat (Titicum durum Desf.) grains: biosynthesis, genetic control, marker selection
Cited by: 4
Author(s): П. Н. Мальчиков, М. G. Myasnikova
Software Mentions: 1
Published: almost 4 years ago

10.1186/1477-7819-12-205

Management of sentinel node re-mapping in patients who have second or recurrent breast cancer and had previous axillary procedures
Cited by: 21
Author(s): Handan Tokmak, Kerim Kaban, Mahmut Müslümanoğlu, Meral Demirel, S.Gulderen Aktan
Software Mentions: 1
Published: over 10 years ago

10.1186/s12967-016-0921-x

Guizhi-Shaoyao-Zhimu decoction attenuates rheumatoid arthritis partially by reversing inflammation-immune system imbalance
Cited by: 45
Author(s): Qiuyan Guo, Xia Mao, Yanqiong Zhang, Shi-Qiu Meng, Yue Xi, Yi Ding, Xiaocun Zhang, Yuntao Dai, Xia Liu, Chao Wang, Yuting Li, Na Lin
Software Mentions: 1
Published: almost 8 years ago

10.2196/20570

Web-Based Patient Segmentation in Finnish Primary Care: Protocol for Clinical Validation of the Navigator Service in Patients With Diabetes
Cited by: 6
Author(s): Riikka Riihimies, Elise Kosunen, Tuomas Koskela
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.9616

Aichi Target 18 beyond 2020: mainstreaming Traditional Biodiversity Knowledge in the conservation and sustainable use of marine and coastal ecosystems
Cited by: 9
Author(s): Paola Fajardo, David Beauchesne, Alberto Carbajal-López, Rémi M. Daigle, Denisse Fierro-Arcos, Jesica Goldsmit, Sabine Zajderman, Juan Ignacio Valdéz-Hernández, María Yolanda Terán Maigua, Ronaldo Adriano Christofoletti
Software Mentions: 1
Published: over 3 years ago

10.1186/s40814-019-0447-0

Supporting Harm Reduction through Peer Support (SHARPS): testing the feasibility and acceptability of a peer-delivered, relational intervention for people with problem substance use who are homeless, to improve health outcomes, quality of life and social functioning and reduce harms: study protocol
Cited by: 12
Author(s): Tessa Parkes, Catriona Matheson, Hannah Carver, John Budd, Dave Liddell, Jason Wallace, Bernie Pauly, Maria Fotopoulou, Adam Burley, Isobel Anderson, Graeme MacLennan, Rebecca Foster
Software Mentions: 1
Published: about 5 years ago

10.1155/2015/395371

Modulating p56Lck in T-Cells by a Chimeric Peptide Comprising Two Functionally Different Motifs of Tip fromHerpesvirus saimiri
Cited by: 0
Author(s): Jean-Paul Vernot, Ana María Perdomo-Arciniegas, Luis Alberto Pérez-Quintero, Diego Martínez
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1000637

The Variant rs1867277 in FOXE1 Gene Confers Thyroid Cancer Susceptibility through the Recruitment of USF1/USF2 Transcription Factors
Cited by: 138
Author(s): Iňigo Landa, Sergio Ruíz-Llorente, Cristina Montero‐Conde, Lucía Inglada‐Pérez, Francesca Schiavi, Susanna Leskelä, Guillermo Pita, Roger L. Milne, Javier Maravall, Isaac Corro Ramos, Víctor Andía, Paloma Rodríguez-Poyo, Antonino Jara-Albarrán, Amparo Meoro, Cristina Del Peso, Luis Arribas, Pedro Iglesias, Javier Caballero, Joaquín Serrano, Antonio Picó, Francisco Pomares, Gabriel Giménez, Pedro López-Mondéjar, R. Castello, Isabella Merante Boschin, Maria Rosa Pelizzo, Dı́dac Mauricio, Giuseppe Opocher, Cristina Rodríguez‐Antona, Anna González‐Neira, Xavier Matías‐Guiu, Pilar Santisteban, Mercedes Robledo
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pntd.0000210

Molecular Genetics Reveal That Silvatic Rhodnius prolixus Do Colonise Rural Houses
Cited by: 119
Author(s): Sinead Fitzpatrick, M. Dora Feliciangeli, M. J. Sánchez‐Martín, Fernando A. Monteiro, Michael A. Miles
Software Mentions: 1
Published: about 16 years ago

10.1186/1471-2164-7-182

The complete sequence of the mitochondrial genome of Nautilus macromphalus (Mollusca: Cephalopoda)
Cited by: 76
Author(s): Jeffrey L. Boore
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0014359

Detection of Heteroplasmic Mitochondrial DNA in Single Mitochondria
Cited by: 23
Author(s): Joseph E. Reiner, Rani Kishore, Barbara C. Levin, Thomas Albanetti, Nicholas Boire, Ashley Knipe, Kristian Helmerson, Koren Holland Deckman
Software Mentions: 1
Published: over 13 years ago

10.1016/j.yjmcc.2017.03.006

Tropomyosin 1: Multiple roles in the developing heart and in the formation of congenital heart defects
Cited by: 35
Author(s): Jennifer England, Javier T. Granados-Riverón, Luis Polo‐Parada, Diji Kuriakose, C. J. Moore, David Brook, Catrin S. Rutland, Kerry Setchfield, Christopher Gell, Tushar K. Ghosh, Frances Bu’Lock, Christopher Thornborough, Elisabeth Ehler, Siobhan Loughna
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0122306

Phylogenetic Placement and Taxonomy of the Genus Hederorkis (Orchidaceae)
Cited by: 4
Author(s): Joanna Mytnik‐Ejsmont, Dariusz L. Szlachetko, Przemysław Baranow, Kevin G. Jolliffe, Marcin Górniak
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0137329

Diagnostic Value of Multidetector CT and Its Multiplanar Reformation, Volume Rendering and Virtual Bronchoscopy Postprocessing Techniques for Primary Trachea and Main Bronchus Tumors
Cited by: 18
Author(s): Mingzhang Luo, Chaijie Duan, Jianping Qiu, Wenru Li, Dongyun Zhu, Wenli Cai
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12863-019-0743-y

Genome-wide identification, structural and gene expression analysis of the bZIP transcription factor family in sweet potato wild relative Ipomoea trifida
Cited by: 43
Author(s): Zhiyong Yang, Jian Sun, Yao Chen, Panpan Zhu, Lei Zhang, Shaoyuan Wu, Daifu Ma, Qinghe Cao, Zongyun Li, Tao Xu
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0189157

Comparisons of auditory brainstem response and sound level tolerance in tinnitus ears and non-tinnitus ears in unilateral tinnitus patients with normal audiograms
Cited by: 29
Author(s): Hyun Joon Shim, Yong-Hwi An, Dong Hyun Kim, Ji Eun Yoon
Software Mentions: 1
Published: over 6 years ago

10.3892/ol.2013.1713

Prognostic value of the BRAF V600E mutation in papillary thyroid carcinoma
Cited by: 20
Author(s): Guoping He, Bin Zhao, Xu Zhang, Renmin Gong
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms18020359

Evidence of a DHA Signature in the Lipidome and Metabolome of Human Hepatocytes
Cited by: 53
Author(s): Veronica Ghini, Mattia Di Nunzio, Leonardo Tenori, Veronica Valli, Francesca Danesi, Francesco Capozzi, Claudio Luchinat, Alessandra Bordoni
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0028266

First Detection of Leishmania major DNA in Sergentomyia (Spelaeomyia) darlingi from Cutaneous Leishmaniasis Foci in Mali
Cited by: 67
Author(s): Zohra Berdjane-Brouk, Abdoulaye K. Koné, Abdoulaye Djimdé, Rémi N. Charrel, Christophe Ravel, Pascal Delaunay, P. Del Giudice, Adama Zan Diarra, Siala Doumbo, Siaka Goïta, Mahamadou A. Thera, Jérôme Depaquit, Pierre Marty, Ogobara K. Doumbo, Arezki Izri
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2148-8-100

Cophylogeny of the anther smut fungi and their caryophyllaceous hosts: Prevalence of host shifts and importance of delimiting parasite species for inferring cospeciation
Cited by: 123
Author(s): Guislaine Refrégier, Mickaël Le Gac, Florian Jabbour, Alex Widmer, Jacqui A. Shykoff, Roxana Yockteng, Michael E. Hood, Tatiana Giraud
Software Mentions: 1
Published: about 16 years ago

10.3390/ani10101779

Animal Welfare Management in a Digital World
Cited by: 50
Author(s): Henry Buller, H.J. Blokhuis, Kees Lokhorst, Mathieu Silberberg, Isabelle Veissier
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0055277

Cyclic Nucleotide Gated Channels 7 and 8 Are Essential for Male Reproductive Fertility
Cited by: 69
Author(s): Meral Tunc‐Ozdemir, Cláudia Rato, Elizabeth Brown, Stephanie Rogers, Amanda Mooneyham, Sabine Frietsch, Candace T. Myers, Lisbeth R. Poulsen, Rui Malhó, Jeffrey F. Harper
Software Mentions: 1
Published: over 11 years ago

10.1186/s13722-017-0076-y

Acceptability of a mobile health intervention to enhance HIV care coordination for patients with substance use disorders
Cited by: 50
Author(s): Ryan P. Westergaard, Andrew Genz, Kristen Panico, Pamela J. Surkan, Jeanne C. Keruly, Heidi E. Hutton, Larry W. Chang, Gregory D. Kirk
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0000740

Wrinkly-Spreader Fitness in the Two-Dimensional Agar Plate Microcosm: Maladaptation, Compensation and Ecological Success
Cited by: 17
Author(s): Andrew J. Spiers
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0085170

Identification of GRB2 and GAB1 Coexpression as an Unfavorable Prognostic Factor for Hepatocellular Carcinoma by a Combination of Expression Profile and Network Analysis
Cited by: 54
Author(s): Yanqiong Zhang, Zhiwei Li, Mei Yang, Danhua Wang, Lingxiang Yu, Chaonan Guo, Xiaodong Guo, Na Lin
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2261-12-95

Founder mutations characterise the mutation panorama in 200 Swedish index cases referred for Long QT syndrome genetic testing
Cited by: 26
Author(s): Eva‐Lena Stattin, Ida Maria Boström, Annika Winbo, Kristina Cederquist, Jenni Jonasson, Bengt‐Gunnar Jonsson, Ulla‐Britt Diamant, Steen M. Jensen, Annika Rydberg, Anna Norberg
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0217826

More subjects are required for ventrolateral than dorsolateral prefrontal TMS because of intolerability and potential drop-out
Cited by: 5
Author(s): Shuyu Han, Akitoshi Ogawa, Takahiro Osada, Akimitsu Suda, Masaki Tanaka, Hitoshi Nanjo, Yasushi Shimo, Nobutaka Hattori, Seiki Konishi
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2407-14-133

RAS mutations in early age leukaemia modulated by NQO1 rs1800566 (C609T) are associated with second-hand smoking exposures
Cited by: 13
Author(s): Francianne Gomes Andrade, Juliana M Furtado Silva, Bruno Alves de Aguiar Gonçalves, Luiz Cláudio Santos Thuler, Thayana C. Barbosa, Mariana Emerenciano, André Machado Siqueira, Maria S. Pombo‐de‐Oliveira
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0013458

Allele Polymorphism and Haplotype Diversity of HLA-A, -B and -DRB1 Loci in Sequence-Based Typing for Chinese Uyghur Ethnic Group
Cited by: 41
Author(s): Chunmei Shen, Bofeng Zhu, Yajun Deng, Shihui Ye, Jiangwei Yan, Guang Yang, Hongdan Wang, Haixia Qin, Qizhao Huang, Jingjing Zhang
Software Mentions: 1
Published: over 13 years ago

10.3390/cancers3021763

Contrast-Enhanced Ultrasound (CEUS) for Echographic Detection of Hepato Cellular Carcinoma in Cirrhotic Patients Previously Treated with Multiple Techniques: Comparison of Conventional US, Spiral CT and 3-Dimensional CEUS with Navigator Technique (3DNav CEUS)
Cited by: 2
Author(s): F. Giangregorio
Software Mentions: 1
Published: about 13 years ago

10.1186/s13020-017-0145-x

A network pharmacology-based strategy deciphers the underlying molecular mechanisms of Qixuehe Capsule in the treatment of menstrual disorders
Cited by: 35
Author(s): Yanqiong Zhang, Xia Mao, Jing Su, Yun Geng, Rui Guo, Shi-Huan Tang, Junfang Li, Xuefeng Xiao, Haiyu Xu, Hongjun Yang
Software Mentions: 1
Published: almost 7 years ago

10.1155/2012/284740

New Platform Technology for Comprehensive Serological Diagnostics of Autoimmune Diseases
Cited by: 54
Author(s): Annika Willitzki, Rico Hiemann, В. В. Петерс, Ulrich Sack, Peter Schierack, Stefan Rödiger, Ursula Anderer, Karsten Conrad, Dimitrios P. Bogdanos, Dirk Reinhold, Dirk Roggenbuck
Software Mentions: 1
Published: over 12 years ago

10.1111/j.1747-0803.2011.00573.x

Combined Mutation Screening of NKX2-5, GATA4, and TBX5 in Congenital Heart Disease: Multiple Heterozygosity and Novel Mutations
Cited by: 74
Author(s): Javier T Granados-Riveron, Mark Pope, Frances Bu’Lock, Christopher Thornborough, Jacqueline Eason, Kerry Setchfield, Ami Ketley, Edwin P. Kirk, Diane Fatkin, Michael P. Feneley, Richard P. Harvey, David Brook
Software Mentions: 1
Published: over 12 years ago

10.1016/j.conctc.2019.100420

Design of the patient navigator to Reduce Readmissions (PArTNER) study: A pragmatic clinical effectiveness trial
Cited by: 9
Author(s): Valentin Prieto-Centurion, Sanjib Basu, Nina Bracken, Elizabeth A. Calhoun, Carolyn Dickens, Robert J. DiDomenico, Richard Gallardo, Victor R. Gordeuk, Melissa Gutierrez-Kapheim, Lewis L. Hsu, Sai Dheeraj Illendula, Min J. Joo, Uzma Kazmi, Amelia A. Mutso, A. Simon Pickard, Barry R. Pittendrigh, Jamie Sullivan, Mark Williams, Jerry A. Krishnan
Software Mentions: 1
Published: almost 5 years ago

10.1007/s11920-014-0506-4

Collaborative Care: Models for Treatment of Patients with Complex Medical-Psychiatric Conditions
Cited by: 48
Author(s): Gabriel Ivbijaro, Yaccub Enum, Anwar A. Khan, Simon Sai-Kei Lam, Andrei Gabzdyl
Software Mentions: 1
Published: over 9 years ago

10.1089/dia.2015.0062

Accuracy of Continuous Glucose Monitoring During Three Closed-Loop Home Studies Under Free-Living Conditions
Cited by: 31
Author(s): Hood Thabit, Lalantha Leelarathna, Malgorzata E. Wilinska, Daniella Elleri, Janet M. Allen, Alexandra Lubina-Solomon, Emma Walkinshaw, Marietta Stadler, Pratik Choudhary, Julia K. Mader, Sibylle Dellweg, Carsten Benesch, Thomas R. Pieber, Sabine Arnolds, Simon Heller, Stephanie A. Amiel, David B. Dunger, Mark L. Evans, Roman Hovorka
Software Mentions: 1
Published: over 8 years ago

10.1155/2013/548498

A Systems Biology-Based Investigation into the Pharmacological Mechanisms of Wu Tou Tang Acting on Rheumatoid Arthritis by Integrating Network Analysis
Cited by: 22
Author(s): Yanqiong Zhang, Danhua Wang, Siew‐Ann Tan, Haiyu Xu, Chunfang Liu, Na Lin
Software Mentions: 1
Published: over 11 years ago

10.3389/fnhum.2017.00535

Sound-Evoked Biceps Myogenic Potentials Reflect Asymmetric Vestibular Drive to Spastic Muscles in Chronic Hemiparetic Stroke Survivors
Cited by: 2
Author(s): Derek M. Miller, William Z. Rymer
Software Mentions: 1
Published: over 6 years ago

10.2196/jmir.9477

Identifying Unmet Treatment Needs for Patients With Osteoporotic Fracture: Feasibility Study for an Electronic Clinical Surveillance System
Cited by: 5
Author(s): Fu‐Yang Lin, Chenyu Wang, Rung Ji Shang, Fei‐Yuan Hsiao, Mei-Shu Lin, Kuan‐Yu Hung, Jui Wang, Zone–Ching Lin, Feipei Lai, Li‐Jiuan Shen, Chih‐Fen Huang
Software Mentions: 1
Published: about 6 years ago

10.2196/26261

Fast Healthcare Interoperability Resources (FHIR)–Based Quality Information Exchange for Clinical Next-Generation Sequencing Genomic Testing: Implementation Study
Cited by: 4
Author(s): Donghyeong Seong, Sungwon Jung, Sungchul Bae, Jongsuk Chung, Dae‐Soon Son, Byoung-Kee Yi
Software Mentions: 1
Published: about 3 years ago

10.3389/fneur.2020.00400

A Digital Patient Portal for Patients With Multiple Sclerosis
Cited by: 21
Author(s): Isabel Voigt, Martin Benedict, Marcel Susky, Tim Scheplitz, Sophie Frankowitz, Raimar Kern, Olaf Müller, Hannes Schlieter, Tjalf Ziemssen
Software Mentions: 1
Published: about 4 years ago

10.3389/fphar.2021.590477

Network Pharmacology-Based Strategy for Elucidating the Molecular Basis Forthe Pharmacologic Effects of Licorice (Glycyrrhiza spp.)
Cited by: 9
Author(s): Jia Chen, Linfu Li, Xiao-Ru Hu, Feng Wei, Shuang‐Cheng Ma
Software Mentions: 1
Published: about 3 years ago

10.1186/s12859-015-0615-z

Integrated web visualizations for protein-protein interaction databases
Cited by: 52
Author(s): Fleur Jeanquartier, Claire Jean-Quartier, Andreas Holzinger
Software Mentions: 1
Published: almost 9 years ago

10.1186/1742-2094-8-32

Pro-inflammatory gene expression in solid glioblastoma microenvironment and in hypoxic stem cells from human glioblastoma
Cited by: 100
Author(s): Marco Tafani, Maura Di Vito, Alessandro Frati, Laura Pellegrini, Elena De Santis, Giovanni Sette, Adriana Eramo, Patrizio Sale, Emanuela Mari, Antonio Santoro, Antonino Raco, Maurizio Salvati, Ruggero De Maria, Matteo Antonio Russo
Software Mentions: 1
Published: over 13 years ago

10.3389/fpsyt.2020.00201

Posttraumatic Stress Disorder Symptoms in Lymphoma Patients: A Prospective Study
Cited by: 1
Author(s): Claire Camille, Chloé Dimeglio, Antoine Yrondi, Gisèle Compaci, Emmanuelle Delmas, Mélanie Gauché, Guy Laurent, Philippe Birmes
Software Mentions: 1
Published: about 4 years ago

10.3389/fpsyt.2021.659571

Unchanged Cognitive Performance and Concurrent Prefrontal Blood Oxygenation After Accelerated Intermittent Theta-Burst Stimulation in Depression: A Sham-Controlled Study
Cited by: 1
Author(s): Wiebke Struckmann, Jonas Persson, Malin Gingnell, Wojciech Weigl, Caroline Wass, Robert Bodén
Software Mentions: 1
Published: almost 3 years ago

10.18632/oncotarget.7419

Pathway of PPAR-gamma coactivators in thermogenesis: a pivotal traditional Chinese medicine-associated target for individualized treatment of rheumatoid arthritis
Cited by: 28
Author(s): Yanqiong Zhang, Xia Mao, Qiuyan Guo, Ming Bai, Bo Zhang, Chunfang Liu, Yehuan Sun, Shao Li, Na Lin
Software Mentions: 1
Published: over 8 years ago

10.3389/fpubh.2014.00170

Triatoma maculata, the Vector of Trypanosoma cruzi, in Venezuela. Phenotypic and Genotypic Variability as Potential Indicator of Vector Displacement into the Domestic Habitat
Cited by: 11
Author(s): Roberto García-Alzate, Daisy Lozano-Arias, Rafael M. Reyes-Lugo, Antonio Morocoima, Leidi Herrera, Alexis Mendoza-León
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2105-12-298

GPS-Prot: A web-based visualization platform for integrating host-pathogen interaction data
Cited by: 67
Author(s): Marie E. Fahey, M. J. Bennett, Cathal Mahon, Stefanie Jäger, Lars Pache, Dhiraj Kumar, Alexander Shapiro, Kanury V. S. Rao, Sumit K. Chanda, Charles S. Craik, Alan D. Frankel, Nevan J. Krogan
Software Mentions: 1
Published: almost 13 years ago