Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Django
https://packages.ecosyste.ms/registries/pypi.org/packages/Django
A high-level Python web framework that encourages rapid development and clean, pragmatic design.
344 versions
Latest release: about 1 year ago
1,833 dependent packages
13,874,637 downloads last month
Papers Mentioning Django 155
10.1186/s12859-017-1905-4
ADAGE signature analysis: differential expression analysis with data-defined gene setsCited by: 15
Author(s): Jie Tan, Matthew Huyck, Dongbo Hu, René A. Zelaya, Deborah A. Hogan, Casey S. Greene
Software Mentions: 25
Published: almost 7 years ago
10.1029/2019EA001004
Open‐Source Software Analysis Tool to Investigate Space Plasma Turbulence and Nonlinear DYNamics (ODYN)Cited by: 6
Author(s): E. Teodorescu, Marius Echim
Software Mentions: 10
Published: over 4 years ago
10.1038/s41597-020-00638-4
AiiDA 1.0, a scalable computational infrastructure for automated reproducible workflows and data provenanceCited by: 117
Author(s): Sebastiaan P. Huber, Spyros Zoupanos, Martin Uhrin, Leopold Talirz, Leonid Kahle, Rico Häuselmann, Dominik Gresch, Tiziano Müller, Aliaksandr V. Yakutovich, Casper Welzel Andersen, Francisco Ramirez, Carl S. Adorf, Fernando Gargiulo, Snehal Kumbhar, Elsa Passaro, Conrad Johnston, Andrius Merkys, Andrea Cepellotti, Nicolas Mounet, Nicola Marzari, Boris Kozinsky, Giovanni Pizzi
Software Mentions: 9
Published: about 4 years ago
10.1093/bioinformatics/btx738
PlanNET: homology-based predicted interactome for multiple planarian transcriptomesCited by: 17
Author(s): Sergio Castillo-Lara, Josep F. Abril
Software Mentions: 8
Published: almost 7 years ago
10.1186/s12864-021-07760-6
UniBind: maps of high-confidence direct TF-DNA interactions across nine speciesCited by: 31
Author(s): Rafael Riudavets Puig, Paul Boddie, Aziz Khan, Jaime A Castro-Mondragón, Anthony Mathelier
Software Mentions: 8
Published: over 3 years ago
10.1109/JTEHM.2020.2989768
Integrated Development Environment for EEG-Driven Cognitive-Neuropsychological ResearchCited by: 6
Author(s): Shoham Jacobsen, Oded Meiron, David Yoel Salomon, Nir Kraizler, Hagai Factor, Efraim Jaul, Elishai Ezra Tsur
Software Mentions: 7
Published: almost 5 years ago
10.1038/s41598-020-61645-4
The Impact of Voice Leading and Harmony on Musical ExpectancyCited by: 3
Author(s): Leona Wall, Robert Lieck, Markus Neuwirth, Martin Rohrmeier
Software Mentions: 7
Published: over 4 years ago
10.1016/j.mec.2019.e00089
Impact framework: A python package for writing data analysis workflows to interpret microbial physiologyCited by: 4
Author(s): Naveen Venayak, Kaushik Raj, Radhakrishnan Mahadevan
Software Mentions: 7
Published: almost 5 years ago
10.7554/eLife.13503
A Mammalian enhancer trap resource for discovering and manipulating neuronal cell typesCited by: 50
Author(s): Yasuyuki Shima, Ken Sugino, Chris M. Hempel, Masami Shima, Praveen Taneja, James B. Bullis, Sonam Mehta, Carlos Lois, Sacha B. Nelson
Software Mentions: 7
Published: over 8 years ago
10.7717/peerj-cs.601
GrimoireLab: A toolset for software development analyticsCited by: 16
Author(s): Santiago Dueñas, Valerio Cosentino, Jesús M. González-Barahona, Alvaro del Castillo San Félix, Daniel Izquierdo-Cortázar, Luis Cañas-Díaz, Alberto Pérez García-Plaza
Software Mentions: 6
Published: over 3 years ago
10.1186/s12859-019-2643-6
First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_Cited by: 8
Author(s): Marco Moretto, Paolo Sonego, Ana B. Villasenõr-Altamirano, Kristof Engelen
Software Mentions: 6
Published: almost 6 years ago
10.1186/1471-2105-10-201
A-MADMAN: Annotation-based microarray data meta-analysis toolCited by: 35
Author(s): Andrea Bisognin, Alessandro Coppe, Francesco Ferrari, Davide Risso, Chiara Romualdi, Silvio Bicciato, Stefania Bortoluzzi
Software Mentions: 6
Published: over 15 years ago
10.1371/journal.pone.0246464
Is it feasible to detect FLOSS version release events from textual messages? A case study on Stack OverflowCited by: 0
Author(s): Artur Sokolovsky, Thomas Groß, Jaume Bacardit
Software Mentions: 6
Published: almost 4 years ago
10.1093/database/baab039
Automatization and self-maintenance of the O-GlcNAcome catalog: a smart scientific databaseCited by: 9
Author(s): Florian Malard, Eugenia Wulff‐Fuentes, Rex Berendt, Guillaume Didier, Stéphanie Olivier-Van Stichelen
Software Mentions: 6
Published: almost 4 years ago
10.1098/rstb.2017.0380
Geppetto: a reusable modular open platform for exploring neuroscience data and modelsCited by: 23
Author(s): Matteo Carandini, Bóris Marin, Adrián Quintana, Matt Earnshaw, Robert Court, Padraig Gleeson, Salvador Durá-Bernal, R. Angus Silver, Giovanni Idili
Software Mentions: 6
Published: about 6 years ago
10.1186/s12911-020-1046-y
Monitoring stance towards vaccination in twitter messagesCited by: 20
Author(s): Florian Kunneman, Mattijs Lambooij, Albert Wong, Antal van den Bosch, Liesbeth Mollema
Software Mentions: 5
Published: almost 5 years ago
10.3390/s21113747
Multi-Criteria Recommendation Systems to Foster Online GroceryCited by: 3
Author(s): Manar Mohamed Hafez, Rebeca P. Díaz Redondo, Ana Fernández Vilas, Héctor Olivera Pazó
Software Mentions: 5
Published: over 3 years ago
10.3390/s20010190
Smart & Green: An Internet-of-Things Framework for Smart IrrigationCited by: 40
Author(s): Nídia G. S. Campos, Atslands Rego da Rocha, Rubens Sonsol Gondim, Ticiana L. Coelho da Silva, Danielo G. Gomes
Software Mentions: 5
Published: almost 5 years ago
10.3390/s20174668
Cognitive Relevance Transform for Population Re-TargetingCited by: 1
Author(s): Gregor Koporec, Andrej Košir, Aleš Leonardis, Janez Perš
Software Mentions: 5
Published: over 4 years ago
10.1038/s41597-020-0474-y
High-throughput screening platform for solid electrolytes combining hierarchical ion-transport prediction algorithmsCited by: 87
Author(s): Bing He, Shuting Chi, Anjiang Ye, Penghui Mi, Liwen Zhang, Bowei Pu, Zheyi Zou, Yunbing Ran, Qian Zhao, Da Wang, Wenqing Zhang, Jing‐Tai Zhao, Stefan Adams, Maxim Avdeev, Siqi Shi
Software Mentions: 5
Published: over 4 years ago
10.3389/fninf.2014.00055
NeuronDepot: keeping your colleagues in sync by combining modern cloud storage services, the local file system, and simple web applicationsCited by: 3
Author(s): Philipp L. Rautenberg, Ajayrama Kumaraswamy, Álvaro Tejero-Cantero, Christoph Doblander, Mohammad Reza Norouzian, Kazuki Kai, Hans‐Arno Jacobsen, Hiroyuki Ai, Thomas Wachtler, Hidetoshi Ikeno
Software Mentions: 5
Published: over 10 years ago
10.1186/s12864-015-1820-x
PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modificationsCited by: 19
Author(s): Rima Chaudhuri, Arash Sadrieh, Nolan J. Hoffman, Benjamin L. Parker, Sean J. Humphrey, Jacqueline Stöckli, Adam P. Hill, David E. James, Jean Yee Hwa Yang
Software Mentions: 5
Published: over 9 years ago
10.1093/gigascience/giaa097
Machado: Open source genomics data integration frameworkCited by: 3
Author(s): Maurício de Alvarenga Mudadu, Adhemar Zerlotini
Software Mentions: 5
Published: about 4 years ago
10.3389/fmolb.2021.715972
Fuzzle 2.0: Ligand Binding in Natural Protein Building BlocksCited by: 5
Author(s): Noelia Ferruz, Florian Michel, Francisco Lobos, Steffen Schmidt, Birte Höcker
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0044185
Sequencing and Characterization of Striped Venus Transcriptome Expand Resources for Clam Fishery GeneticsCited by: 23
Author(s): Alessandro Coppe, Stefania Bortoluzzi, Giulia Murari, Ilaria A. M. Marino, Lorenzo Zane, Chiara Papetti
Software Mentions: 4
Published: about 12 years ago
10.1016/j.gpb.2018.11.002
Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11,087 Clinical IsolatesCited by: 8
Author(s): Valentina Galata, Cédric Christian Laczny, Christina Backes, Georg Hemmrich-Stanisak, Susanne Schmolke, André Franke, Eckart Meese, Mathias Herrmann, Lutz von Müller, Achim Plum, Rolf Müller, Cord Stähler, Andreas E. Posch
Software Mentions: 4
Published: over 5 years ago
10.1186/s12859-020-03601-7
AutoCloner: automatic homologue-specific primer design for full-gene cloning in polyploidsCited by: 0
Author(s): Alexander Coulton, Keith J. Edwards
Software Mentions: 4
Published: over 4 years ago
10.3389/fninf.2021.713899
The EBRAINS NeuroFeatureExtract: An Online Resource for the Extraction of Neural Activity Features From Electrophysiological DataCited by: 2
Author(s): Luca Bologna, Roberto Smiriglia, Dario Curreri, Michele Migliore
Software Mentions: 4
Published: about 3 years ago
10.1016/j.envsoft.2020.104703
PiSCES: Pi(scine) stream community estimation systemCited by: 3
Author(s): Mike Cyterski, Craig Barber, Mike Galvin, Rajbir Parmar, John M. Johnston, Deron Smith, Amber R. Ignatius, Lourdes Prieto, Kurt Wolfe
Software Mentions: 4
Published: over 4 years ago
10.1093/database/bau076
APADB: a database for alternative polyadenylation and microRNA regulation eventsCited by: 88
Author(s): Sören Müller, Lukas Rycak, Fabian Afonso-Grunz, Peter Winter, Adam M. Zawada, Ewa Damrath, Jessica Scheider, Juliane Schmäh, Ina Koch, Günter Kahl, Björn Rotter
Software Mentions: 4
Published: over 10 years ago
10.1093/database/baaa115
HeartBioPortal2.0: new developments and updates for genetic ancestry and cardiometabolic quantitative traits in diverse human populationsCited by: 4
Author(s): Bohdan B. Khomtchouk, Christopher S. Nelson, Kasra A. Vand, Salvator Palmisano, Robert L. Grossman
Software Mentions: 4
Published: almost 5 years ago
10.1186/s12859-018-2526-2
Constructing a database for the relations between CNV and human genetic diseases via systematic text miningCited by: 15
Author(s): Xi Yang, Zhuo Song, Chengkun Wu, Wei Wang, Gen Li, Wei Zhang, Lingqian Wu, Kai Lü
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12920-018-0430-2
CRlncRNA: a manually curated database of cancer-related long non-coding RNAs with experimental proof of functions on clinicopathological and molecular featuresCited by: 20
Author(s): Jun Wang, Xuan Zhang, Wen Chen, Jing Li, Changning Liu
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12911-019-0750-y
A visual interactive analytic tool for filtering and summarizing large health data sets coded with hierarchical terminologies (VIADS)Cited by: 8
Author(s): Xia Jing, Matthew Emerson, David Masters, Matthew L. Brooks, Jacob Buskirk, Nasseef Abukamail, Chang Liu, James J. Cimino, Jay H. Shubrook, Sonsoles de Lacalle, Yuchun Zhou, Vimla L. Patel
Software Mentions: 4
Published: almost 6 years ago
10.1093/bioinformatics/btw417
SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomenaCited by: 35
Author(s): Yukako Tohsato, Kenneth H. L. Ho, Koji Kyoda, Shuichi Onami
Software Mentions: 4
Published: over 8 years ago
10.1155/2014/253013
Polyglot Programming in Applications Used for Genetic Data AnalysisCited by: 5
Author(s): Robert Nowak
Software Mentions: 4
Published: almost 11 years ago
10.1186/s13029-017-0065-2
LitDB - Keeping Track of Research Papers From Your Institute Made SimpleCited by: 0
Author(s): Jörn Bethune, Lars Kraemer, Ingo Thomsen, Andreas Keller, David Ellinghaus, André Franke
Software Mentions: 4
Published: over 7 years ago
10.3390/vaccines8040709
Bacterial Immunogenicity Prediction by Machine Learning MethodsCited by: 9
Author(s): Иван Димитров, Nevena Zaharieva, Irini Doytchinova
Software Mentions: 4
Published: almost 4 years ago
10.7717/peerj.5261
<i>Staphylococcus aureus</i> viewed from the perspective of 40,000+ genomesCited by: 57
Author(s): Robert A. Petit, Timothy D. Read
Software Mentions: 4
Published: over 6 years ago
10.7717/peerj-cs.161
An integrated platform for intuitive mathematical programming modeling using LaTeXCited by: 4
Author(s): Charalampos Triantafyllidis, Lazaros G. Papageorgiou
Software Mentions: 4
Published: about 6 years ago
10.1016/j.jsb.2016.02.012
Web-based volume slicer for 3D electron-microscopy data from EMDBCited by: 14
Author(s): José Salavert-Torres, A. Iudin, Ingvar Lagerstedt, Eduardo Sanz-García, Gerard J. Kleywegt, Ardan Patwardhan
Software Mentions: 3
Published: over 8 years ago
10.1107/S2059798321003818
<i>FragMAXapp</i>: crystallographic fragment-screening data-analysis and project-management systemCited by: 9
Author(s): G.M.A. Lima, E. Jagudin, V. Talibov, L.S. Benz, Costantino Marullo, T. Barthel, J. Wollenhaupt, M.S. Weiss, U. Muêller
Software Mentions: 3
Published: over 3 years ago
10.3389/fninf.2018.00080
Web-Based Interfaces for Virtual C. elegans Neuron Model Definition, Network Configuration, Behavioral Experiment Definition and Experiment Results VisualizationCited by: 1
Author(s): Gorka Epelde, Frank Morgan, Andoni Mujika, Frank Callaly, Peter Leškovský, Brian McGinley, Roberto Álvarez, Axel Blau, Finn Krewer
Software Mentions: 3
Published: about 6 years ago
10.3390/s20102962
Nextmed: Automatic Imaging Segmentation, 3D Reconstruction, and 3D Model Visualization Platform Using Augmented and Virtual RealityCited by: 41
Author(s): Santiago González Izard, Ramiro Sánchez Torres, Óscar Alonso Plaza, Juan Antonio Juanes Méndez, Francisco José García-Peñalvo
Software Mentions: 3
Published: over 4 years ago
10.1186/s13321-021-00509-z
Flame: an open source framework for model development, hosting, and usage in production environmentsCited by: 8
Author(s): Manuel Pastor, José Carlos Gómez-Tamayo, Ferrán Sanz
Software Mentions: 3
Published: over 3 years ago
10.1186/s13326-016-0072-2
PhenoImageShare: an image annotation and query infrastructureCited by: 12
Author(s): Solomon Adebayo, Kenneth McLeod, Ilinca Tudose, David Osumi-Sutherland, Tony Burdett, Richard Baldock, Albert Burger, Helen Parkinson
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pcbi.1006542
Eleven quick tips to build a usable REST API for life sciencesCited by: 17
Author(s): Aleksandra Tarkowska, Denise Carvalho-Silva, Charles E. Cook, E. B. Turner, Alex Bateman, Andy Yates
Software Mentions: 3
Published: almost 6 years ago
10.1016/j.jbc.2021.100956
OdoriFy: A conglomerate of artificial intelligence–driven prediction engines for olfactory decodingCited by: 12
Author(s): Ria Gupta, Aayushi Mittal, V. P. Agrawal, Samarth Gupta, Kavya Gupta, Rishi Raj Jain, Prakriti Garg, Sanjay Kumar Mohanty, Riya Sogani, Harshit Singh Chhabra, Vishakha Gautam, Tripti Mishra, Debarka Sengupta, Gaurav Ahuja
Software Mentions: 3
Published: over 3 years ago
10.1093/database/baz060
ResMarkerDB: a database of biomarkers of response to antibody therapy in breast and colorectal cancerCited by: 10
Author(s): Judith Pérez-Granado, Janet Piñero, Laura I. Furlong
Software Mentions: 3
Published: almost 6 years ago
10.1089/crispr.2020.0022
Deconvolution of Complex DNA Repair (DECODR): Establishing a Novel Deconvolution Algorithm for Comprehensive Analysis of CRISPR-Edited Sanger Sequencing DataCited by: 39
Author(s): Kevin Bloh, Rohan Kanchana, Pawel Bialk, Kelly Banas, Zugui Zhang, Byung-Chun Yoo, Eric B. Kmiec
Software Mentions: 3
Published: almost 4 years ago
10.1186/1471-2164-13-507
Surviving in a toxic world: transcriptomics and gene expression profiling in response to environmental pollution in the critically endangered European eelCited by: 67
Author(s): J. M. Pujolar, Ilaria A. M. Marino, Massimo Milan, Alessandro Coppe, Grégory E. Maes, Fabrizio Capoccioni, Eleonora Ciccotti, Lieven Bervoets, Adrian Covaci, Claude Belpaire, Gordon Cramb, Tomaso Patarnello, Luca Bargelloni, Stefania Bortoluzzi, Lorenzo Zane
Software Mentions: 3
Published: almost 13 years ago
10.1186/s12859-017-1680-2
CircularLogo: A lightweight web application to visualize intra-motif dependenciesCited by: 5
Author(s): Zhenqing Ye, Tao Ma, Michael Kalmbach, Surendra Dasari, Jean Pierre A. Kocher, Liguo Wang
Software Mentions: 3
Published: over 7 years ago
10.3390/metabo10100393
BALSAM—An Interactive Online Platform for Breath Analysis, Visualization and ClassificationCited by: 5
Author(s): Peter Weber, Josch Pauling, Markus List, Jan Baumbach
Software Mentions: 3
Published: about 4 years ago
10.1093/gigascience/gix099
An architecture for genomics analysis in a clinical setting using Galaxy and DockerCited by: 9
Author(s): William Digan, Hector Countouris, Marc Barritault, David Baudoin, Pierre Laurent‐Puig, Hélène Blons, Anita Burgun, Bastien Rance
Software Mentions: 3
Published: about 7 years ago
10.7554/eLife.65376
A unified platform to manage, share, and archive morphological and functional data in insect neuroscienceCited by: 20
Author(s): Stanley Heinze, Basil el Jundi, Bente Gunnveig Berg, Uwe Homberg, Randolf Menzel, Keram Pfeiffer, Ronja Hensgen, Frederick Zittrell, Marie Dacke, Eric J. Warrant, Gerit Pfuhl, Jürgen Rybak, Kevin Tedore
Software Mentions: 3
Published: about 3 years ago
10.1371/journal.pcbi.1005520
Mendel,MD: A user-friendly open-source web tool for analyzing WES and WGS in the diagnosis of patients with Mendelian disordersCited by: 9
Author(s): Raony G C C L Cardenas, Natália Duarte Linhares, Raquel L. Ferreira, Sérgio D.J. Pena
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-018-20232-4
Lnc2Catlas: an atlas of long noncoding RNAs associated with risk of cancersCited by: 25
Author(s): Chao Ren, Gaole An, Chenghui Zhao, Zhangyi Ouyang, Xiaochen Bo, Wenjie Shu
Software Mentions: 3
Published: almost 7 years ago
10.1186/s12870-020-02659-y
Database: web application for visualization of the cumulated RNAseq data against the salicylic acid (SA) and methyl jasmonate (MeJA) treatment of Arabidopsis thalianaCited by: 2
Author(s): Dong U Woo, Ho Hwi Jeon, Halim Park, Jin Hwa Park, Yejin Lee, Yang-Jae Kang
Software Mentions: 3
Published: about 4 years ago
10.1186/s12889-015-1358-5
Evaluation of the impact of a mobile health system on adherence to antenatal and postnatal care and prevention of mother-to-child transmission of HIV programs in KenyaCited by: 52
Author(s): Ivy Mushamiri, Chibulu Luo, Casey Iiams-Hauser, Yanis Ben Amor
Software Mentions: 3
Published: almost 10 years ago
10.1186/s12984-020-00742-x
Traumatic brain injury neuroelectrochemical monitoring: behind-the-ear micro-instrument and cloud applicationCited by: 3
Author(s): Momen Kamal Tageldeen, Sally A. N. Gowers, Chi Leng Leong, Martyn G. Boutelle, Emmanuel M. Drakakis
Software Mentions: 3
Published: over 4 years ago
10.1186/s12911-019-0844-6
TASKA: A modular task management system to support health research studiesCited by: 7
Author(s): João Rafael Almeida, Rosa Gini, Giuseppe Roberto, Peter R. Rijnbeek, José Luís Oliveira
Software Mentions: 3
Published: over 5 years ago
10.1093/bioinformatics/btaa928
BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequencesCited by: 14
Author(s): Aziz Khan, Rafael Riudavets Puig, Paul Boddie, Anthony Mathelier
Software Mentions: 3
Published: about 4 years ago
10.1186/s13023-021-01916-z
PhenoDB, GeneMatcher and VariantMatcher, tools for analysis and sharing of sequence dataCited by: 20
Author(s): Elizabeth Wohler, Renan Paulo Martin, Sean Griffith, Eliete da S Rodrigues, Corina Antonescu, Jennifer E. Posey, Zeynep Coban‐Akdemir, Shalini N. Jhangiani, Kimberly F. Doheny, James R. Lupski, David Valle, Ada Hamosh, Nara Sobreira
Software Mentions: 2
Published: over 3 years ago
10.1186/s12859-020-03762-5
Moving forward through the in silico modeling of tuberculosis: a further step with UISS-TBCited by: 10
Author(s): Giulia Russo, Giuseppe Sgroi, Giuseppe Alessandro Parasiliti Palumbo, Marzio Pennisi, Miguel A. Juárez, Père-Joan Cardona, Santo Motta, K. Barry Walker, Epifanio Fichera, Marco Viceconti, Francesco Pappalardo
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12859-018-2016-6
BRCA-Pathway: a structural integration and visualization system of TCGA breast cancer data on KEGG pathwaysCited by: 18
Author(s): In-Young Kim, Saemi Choi, Sun Kim
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12859-018-2082-9
DecoFungi: a web application for automatic characterisation of dye decolorisation in fungal strainsCited by: 3
Author(s): César Domínguez, Jónathan Heras, Eloy Mata, Vico Pascual
Software Mentions: 2
Published: over 6 years ago
10.1186/s12859-019-3147-0
Annot: a Django-based sample, reagent, and experiment metadata tracking systemCited by: 1
Author(s): Elmar Bucher, Cheryl J. Claunch, Derrick Hee, Rebecca Smith, Kaylyn L. Devlin, Wallace Thompson, James E. Korkola, Laura M. Heiser
Software Mentions: 2
Published: about 5 years ago
10.1186/s12859-017-1722-9
SBMLmod: a Python-based web application and web service for efficient data integration and model simulationCited by: 5
Author(s): Sascha Schäuble, Anne-Kristin Stavrum, Mathias Bockwoldt, Pål Puntervoll, Ines Heiland
Software Mentions: 2
Published: over 7 years ago
10.1186/1471-2148-9-108
PhyloExplorer: a web server to validate, explore and query phylogenetic treesCited by: 18
Author(s): Vincent Ranwez, Nicolas Clairon, Frédéric Delsuc, Saeed Pourali, Nicolas Auberval, Sorel Diser, Vincent Berry
Software Mentions: 2
Published: almost 16 years ago
10.1186/1471-2164-11-635
Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eelCited by: 85
Author(s): Alessandro Coppe, J. M. Pujolar, Grégory E. Maes, Peter Larsen, Michael Møller Hansen, Louis Bernatchez, Lorenzo Zane, Stefania Bortoluzzi
Software Mentions: 2
Published: about 14 years ago
10.1186/1471-2164-15-371
A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencingCited by: 37
Author(s): José B. Pereira-Leal, Isabel A. Abreu, Cláudia S. Alabaça, Maria Helena Almeida, Paulo Almeida, Tânia Almeida, Isabel Amorim, Susana de Sousa Araújo, Herlânder Azevedo, Aleix Badia, Dora Batista, Andreas Böhn, Tiago Capote, Isabel Carrasquinho, Inês Chaves, Ana Cristina Coelho, María José Costa, Rita Costa, A. Cravador, Conceição Egas, Carlos Faro, Ana Margarida Fortes, Ana S. Fortunato, Maria João Gaspar, Sónia Gonçalves, José Graça, M. Horta, Vera Inácio, José Leitão, Teresa Lino-Neto, Liliana Marum, José Matos, Diogo Mendonça, Andreia Miguel, Celia María Gonzalo Miguel, Leonor Morais-Cecílio, Isabel Neves, Filomena Nóbrega, Maria Margarida Oliveira, Rute Oliveira, M. S. Pais, Jorge A P Paiva, Octávio S. Paulo, Miguel Pinheiro, João Raimundo, José C. Ramalho, Ana Isabel Ribeiro, Teresa Ribeiro, Margarida Rocheta, Ana Isabel Rodrigues, José Carlos Rodrígues, Nelson J. M. Saibo, Tatiana Santo, Ana Clara Santos, Paula Sá–Pereira, Mónica Sebastiana, Fernanda Simões, Rómulo Sacramento Sobral, R. M. Tavares, Rita Teresa Teixeira, Carolina Varela, Manuela Veloso, Cândido Pinto Ricardo
Software Mentions: 2
Published: almost 11 years ago
10.1186/s12913-021-06082-3
Impact of mhealth messages and environmental cues on hand hygiene practice among healthcare workers in the greater Kampala metropolitan area, Uganda: study protocol for a cluster randomized trialCited by: 4
Author(s): Richard K. Mugambe, Jane Sembuche Mselle, Tonny Ssekamatte, Moses Ntanda, John Bosco Isunju, Solomon Tsebeni Wafula, Winnifred K. Kansiime, P. Isubikalu, David Katwere Ssemwanga, Habib Yakubu, Christine L. Moe
Software Mentions: 2
Published: almost 4 years ago
10.1186/1756-0500-4-121
mmView: a web-based viewer of the mmCIF formatCited by: 0
Author(s): Petr Čech, Daniel Svozil
Software Mentions: 2
Published: over 13 years ago
10.1093/bioinformatics/btaa072
atomium—a Python structure parserCited by: 12
Author(s): Sam M. Ireland, Andrew C.R. Martin
Software Mentions: 2
Published: almost 5 years ago
10.1186/s40708-020-00103-3
An open-source framework for neuroscience metadata management applied to digital reconstructions of neuronal morphologyCited by: 14
Author(s): Kayvan Bijari, Masood A. Akram, Giorgio A. Ascoli
Software Mentions: 2
Published: over 4 years ago
10.3390/metabo5030431
Analysis of Metabolomics Datasets with High-Performance Computing and Metabolite AtlasesCited by: 50
Author(s): Y. Yao, Terence Sun, Tony Wang, Oliver Ruebel, Trent Northen, Benjamin P. Bowen
Software Mentions: 2
Published: over 9 years ago
10.1007/s11032-015-0430-2
Orphan Crops Browser: a bridge between model and orphan cropsCited by: 18
Author(s): Claire Lessa Alvim Kamei, Edouard Severing, Annemarie Dechesne, Heleen Furrer, O. Dolstra, Luisa M. Trindade
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pcbi.1005128
Ten Simple Rules for Developing Public Biological DatabasesCited by: 25
Author(s): Mohamed Helmy, Alexander Crits-Christoph, Gary D. Bader
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pone.0252843
Exploring daily time-use patterns: ATUS-X data extractor and online diary visualization toolCited by: 5
Author(s): Kamila Kolpashnikova, Sarah Flood, Oriel Sullivan, Liana C. Sayer, Ekaterina Hertog, Muzhi Zhou, Man-Yee Kan, Jooyeoun Suh, Jonathan Gershuny
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0134273
JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance ComputingCited by: 13
Author(s): David K. Brown, David L. Penkler, Thommas M. Musyoka, Özlem Tastan Bishop
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0162801
ePGA: A Web-Based Information System for Translational PharmacogenomicsCited by: 12
Author(s): Kleanthi Lakiotaki, Evgenia Kartsaki, Alexandros Kanterakis, Θεοδώρα Κάτσιλα, George P. Patrinos, George Potamias
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pone.0210705
Potential off-target effects of beta-blockers on gut hormone receptors: In silico study including GUT-DOCK—A web service for small-molecule dockingCited by: 12
Author(s): Paweł Pasznik, Ewelina Rutkowska, Szymon Niewieczerzał, Judyta Cielecka‐Piontek, Dorota Latek
Software Mentions: 2
Published: almost 6 years ago
10.1093/database/bax073
An online analytical processing multi-dimensional data warehouse for malaria dataCited by: 2
Author(s): Samsul Arifin, Gregory R. Madey, Alexander Vyushkov, Benoit Raybaud, Thomas R. Burkot, Frank H. Collins
Software Mentions: 2
Published: almost 8 years ago
10.1093/database/bay087
MetaHCR: a web-enabled metagenome data management system for hydrocarbon resourcesCited by: 1
Author(s): Peter C. Marks, Marc B. Bigler, Eric Alsop, Adrien Vigneron, Bart P. Lomans, Renato De Paula, Brett Geissler, Nicolas Tsesmetzis
Software Mentions: 2
Published: almost 7 years ago
10.1093/database/baab001
InSexBase: an annotated genomic resource of sex chromosomes and sex-biased genes in insectsCited by: 2
Author(s): X I Chen, Mei Yang, Mengyao Chen, Jing Dong, Yi He, Feiling Liu, Kang He, Fēi Li
Software Mentions: 2
Published: almost 4 years ago
10.1093/database/baz149
WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegansCited by: 34
Author(s): L. Basten Snoek, M.G. Sterken, Margi Hartanto, Albert-Jan van Zuilichem, J.E. Kammenga, Dick de Ridder, Harm Nijveen
Software Mentions: 2
Published: almost 5 years ago
10.1093/database/bay118
RTPDB: a database providing associations between genetic variation or expression and cancer prognosis with radiotherapy-based treatmentCited by: 3
Author(s): Chengdong Zhang, Yuan Yang, Huanhuan Chen, Ting Zhang, Qiang Wang, Yuan Liang, Liang Zhang, Yan Zhou
Software Mentions: 2
Published: almost 7 years ago
10.3389/fdata.2021.663410
Data Ecosystems for Scientific Experiments: Managing Combustion Experiments and Simulation Analyses in Chemical EngineeringCited by: 5
Author(s): Edoardo Ramalli, Gabriele Scalia, Barbara Pernici, Alessandro Stagni, Alberto Cuoci, Tiziano Faravelli
Software Mentions: 2
Published: about 3 years ago
10.3389/fimmu.2019.02820
Detection of Enriched T Cell Epitope Specificity in Full T Cell Receptor Sequence RepertoiresCited by: 96
Author(s): Sofie Gielis, Pieter Moris, Wout Bittremieux, Nicolas De Neuter, Benson Ogunjimi, Kris Laukens, Pieter Meysman
Software Mentions: 2
Published: almost 5 years ago
10.1080/16549716.2018.1517930
Development of mWellcare: an mHealth intervention for integrated management of hypertension and diabetes in low-resource settingsCited by: 29
Author(s): Devraj Jindal, Priti Gupta, Dilip Kumar Jha, Vamadevan S. Ajay, Shifalika Goenka, Pramod Jacob, Kriti Mehrotra, Pablo Perel, Jonathan Nyong, Ambuj Roy, Nikhil Tandon, Dorairaj Prabhakaran, Vikram Patel
Software Mentions: 2
Published: almost 7 years ago
10.1016/j.heliyon.2019.e02622
Auto-assessment tools for mechanical computer aided design educationCited by: 9
Author(s): Kaur Jaakma, Panu Kiviluoma
Software Mentions: 2
Published: about 5 years ago
10.1186/s13321-018-0289-4
HAMdb: a database of human autophagy modulators with specific pathway and disease informationCited by: 36
Author(s): Ningning Wang, Jie Dong, Lin Zhang, Defang Ouyang, Yan Cheng, Alex F. Chen, Aiping Lü, Dong‐Sheng Cao
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-020-61508-y
Hepamine - A Liver Disease Microarray Database, Visualization Platform and Data-Mining ResourceCited by: 5
Author(s): Timo Itzel, M Neubauer, Matthias Ebert, Matthias Evert, Andreas Teufel
Software Mentions: 2
Published: over 4 years ago
10.3390/s17051173
Eyes of ThingsCited by: 17
Author(s): Oscar Deniz, Noelia Vállez, José Luís Espinosa-Aranda, Jose M. Rico-Saavedra, Javier Parra-Patino, Gloria Bueno, David Moloney, Alireza Dehghani, Aubrey Dunne, Alain Pagani, Stephan Krauß, Ruben Reiser, Martin Waeny, Matteo Sorci, Tim Llewellynn, Christian Fedorczak, Thierry Larmoire, Marco Herbst, Andre Seirafi, Kasra Seirafi
Software Mentions: 2
Published: over 7 years ago
10.3390/s18051622
A Multimodal Deep Log-Based User Experience (UX) Platform for UX EvaluationCited by: 24
Author(s): Jamil Hussain, Wajahat Ali Khan, Tae Ho Hur, Hafiz Syed Muhammad Bilal, Jae Hun Bang, Anees Ul Hassan, Muhammad Afzal, Sungyoung Lee
Software Mentions: 2
Published: over 6 years ago
10.3390/s21051707
ZARATAMAP: Noise Characterization in the Scope of a Smart City through a Low Cost and Mobile Electronic Embedded SystemCited by: 5
Author(s): Unai Hernández-Jayo, Amaia Goñi
Software Mentions: 2
Published: over 3 years ago
10.1186/1751-0473-6-9
LimsPortal and BonsaiLIMS: development of a lab information management system for translational medicineCited by: 6
Author(s): Timothy G. Bath, Selçuk Bozdag, Vackar Afzal, Daniel Crowther
Software Mentions: 2
Published: over 13 years ago
10.3390/ijerph110100749
Adaptive Tele-Therapies Based on Serious Games for Health for People with Time-Management and Organisational Problems: Preliminary ResultsCited by: 20
Author(s): Maite Frutos-Pascual, Begoña García Zapirain, Amaia Méndez Zorrilla
Software Mentions: 2
Published: almost 11 years ago
10.7554/eLife.09960
Hippocampome.org: a knowledge base of neuron types in the rodent hippocampusCited by: 116
Author(s): Diek W. Wheeler, Charise M. White, Colin Rees, Alexander O. Komendantov, D. R. Hamilton, Giorgio A. Ascoli
Software Mentions: 2
Published: about 9 years ago
10.1186/s13023-017-0686-1
A web-based, patient driven registry for Angelman syndrome: the global Angelman syndrome registryCited by: 14
Author(s): Kathryn R. Napier, Megan Tones, Chloe Simons, Helen Heussler, Adam Hunter, Meagan Cross, M. Bellgard
Software Mentions: 2
Published: over 7 years ago