Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-021-07760-6

https://doi.org/10.1186/s12864-021-07760-6

UniBind: maps of high-confidence direct TF-DNA interactions across nine species

Cited by: 31
Author(s): Rafael Riudavets Puig, Paul Boddie, Aziz Khan, Jaime A Castro-Mondragón, Anthony Mathelier
Published: over 3 years ago

Software Mentions 8

bioconductor: ChIPseeker

ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
Papers that mentioned: 161

cran: CREAM

Clustering of Genomic Regions Analysis Method
Papers that mentioned: 16

cran: JASPAR

R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283

cran: reldist

Relative Distribution Methods
Papers that mentioned: 15

pypi: browser

A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 2,125

pypi: Django

A high-level Python web framework that encourages rapid development and clean, pragmatic design.
Papers that mentioned: 155

pypi: MACS

Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233

pypi: scipy

Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071