cran: MPS | Projects | Ecosyste.ms: Papers

10.3390/microorganisms9091943

Fungi in Permafrost-Affected Soils of the Canadian Arctic: Horizon- and Site-Specific Keystone Taxa Revealed by Co-Occurrence Network
Cited by: 6
Author(s): Milan Varsadiya, Tim Urich, Gustaf Hugelius, Jiří Bárta
Software Mentions: 8
Published: about 3 years ago

10.1371/journal.pone.0031630

Optimizing a Massive Parallel Sequencing Workflow for Quantitative miRNA Expression Analysis
Cited by: 33
Author(s): Francesca Cordero, Marco Beccuti, Maddalena Arigoni, Susanna Donatelli, Raffaele Calogero
Software Mentions: 8
Published: over 12 years ago

10.15252/msb.20188664

Patient‐specific logic models of signaling pathways from screenings on cancer biopsies to prioritize personalized combination therapies
Cited by: 37
Author(s): Federica Eduati, Patricia Jaaks, Jessica Wappler, Thorsten Cramer, Christoph A. Merten, Mathew J. Garnett, Julio Sáez-Rodríguez
Software Mentions: 4
Published: over 4 years ago

10.1038/srep12615

Decrease of mRNA Editing after Spinal Cord Injury is Caused by Down-regulation of ADAR2 that is Triggered by Inflammatory Response
Cited by: 27
Author(s): Antonio Fabio Di Narzo, Alexey Kozlenkov, Yongchao Ge, Bin Zhang, Leo Sanelli, Zacnicte May, Yanqing Li, Karim Fouad, Christopher P. Cardozo, Eugene V. Koonin, David J. Bennett, Stella Dracheva
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0014782

Genome-Wide Footprints of Pig Domestication and Selection Revealed through Massive Parallel Sequencing of Pooled DNA
Cited by: 122
Author(s): Andreia J. Amaral, Luca Ferretti, Hendrik‐Jan Megens, R.P.M.A. Crooijmans, Haisheng Nie, Sebastián E. Ramos-Onsins, Miguel Pérez‐Enciso, Lawrence B. Schook, Martien A. M. Groenen
Software Mentions: 4
Published: over 13 years ago

10.3390/genes11111303

Mitochondrial Sequencing of Missing Persons DNA Casework by Implementing Thermo Fisher’s Precision ID mtDNA Whole Genome Assay
Cited by: 19
Author(s): Daniela Cuenca, Jessica Battaglia, Michelle Halsing, Sandra Sheehan
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0226193

Ultra-deep massively parallel sequencing with unique molecular identifier tagging achieves comparable performance to droplet digital PCR for detection and quantification of circulating tumor DNA from lung cancer patients
Cited by: 15
Author(s): Le Son Tran, Hong-Anh Thi Pham, Van Thi Thanh Tran, Thuy Thi Thu Tran, Anh-Thu Huynh Dang, Dinh-Thong Vu Le, Son-Lam Nguyen, Ngoc-Vu Nguyen, Tuan S. Nguyen, Binh Thanh Vo, Hong-Thuy Thi Dao, Nguyen Huu Nguyen, Thuy Tran, Chu Van Nguyen, Phuong Cam Pham, Anh Tuan Dang-Mai, Thien Kim Dinh-Nguyen, Vu Hien Phan, Thanh-Thuy Thi, Kiet Truong Dinh, Han Ngoc, Minh-Duy Phan, Hoa Giang, Hoai-Nghia Nguyen
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12859-017-1552-9

Statistical method to compare massive parallel sequencing pipelines
Cited by: 4
Author(s): Mad-Hélénie Elsensohn, Noémie Leblay, Sarra Dimassi, Amandine Campan-Fournier, Audrey Labalme, Florence Roucher‐Boulez, Damien Sanlaville, Gaëtan Lesca, Claire Bardel, Pascal Roy
Software Mentions: 3
Published: over 7 years ago

10.1186/1471-2164-14-484

Design and validation of a supragenome array for determination of the genomic content of Haemophilus influenzae isolates
Cited by: 15
Author(s): Rory Eutsey, N. Luisa Hiller, Joshua P. Earl, Benjamin Janto, Margaret E. Dahlgren, Azad Ahmed, Evan Powell, Matthew Schultz, Janet R. Gilsdorf, Lixin Zhang, Arnold L. Smith, Timothy F. Murphy, Sanjay Sethi, Kai Shen, J. Christopher Post, Fang Hu, Garth D. Ehrlich
Software Mentions: 3
Published: about 11 years ago

10.3390/genes11121398

Evaluation of the Ion AmpliSeq™ PhenoTrivium Panel: MPS-Based Assay for Ancestry and Phenotype Predictions Challenged by Casework Samples
Cited by: 18
Author(s): Marta Diepenbroek, Birgit Bayer, Kristina Schwender, Roberta Schiller, Jessica Lim, Robert Lagacé, Katja Anslinger
Software Mentions: 3
Published: almost 4 years ago

10.7717/peerj.800

Language workbench user interfaces for data analysis
Cited by: 6
Author(s): Victoria M. Benson, Fabien Campagne
Software Mentions: 3
Published: over 9 years ago

10.7717/peerj.3406

MitoSuite: a graphical tool for human mitochondrial genome profiling in massive parallel sequencing
Cited by: 25
Author(s): Koji Ishiya, Shintaroh Ueda
Software Mentions: 3
Published: over 7 years ago

10.1186/s12859-015-0458-7

ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering
Cited by: 12
Author(s): Bie Verbist, Lieven Clement, Joke Reumers, Kim Thys, A. Vapirev, Willem Talloen, Yves Wetzels, Joris Meys, Jeroen Aerssens, Luc Bijnens, Olivier Thas
Software Mentions: 3
Published: over 9 years ago

10.3390/genes8100237

Optimized mtDNA Control Region Primer Extension Capture Analysis for Forensically Relevant Samples and Highly Compromised mtDNA of Different Age and Origin
Cited by: 45
Author(s): Mayra Eduardoff, Catarina Xavier, Christina Strobl, Andrea Casas-Vargas, Walther Parson
Software Mentions: 3
Published: almost 7 years ago

10.3325/cmj.2015.56.218

Blind study evaluation illustrates utility of the Ion PGM™ system for use in human identity DNA typing
Cited by: 36
Author(s): Jennifer D. Churchill, Joseph Chang, Jianye Ge, Narasimhan Rajagopalan, Sharon Wootton, Chien-Wei Chang, Robert Lagacé, Wenchi Liao, Jonathan L. King, Bruce Budowle
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pgen.1006960

Forensic genetics and genomics: Much more than just a human affair
Cited by: 60
Author(s): Miguel Arenas, Filipe Pereira, Manuela Oliveira, Nádia Pinto, Alexandra M. Lopes, Verónica Gomes, Ángel Carracedo, António Amorim
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.gpb.2015.08.001

Novel Y-chromosome Short Tandem Repeat Variants Detected Through the Use of Massively Parallel Sequencing
Cited by: 26
Author(s): David H. Warshauer, Jennifer D. Churchill, Nicole M.M. Novroski, Jonathan L. King, Bruce Budowle
Software Mentions: 2
Published: about 9 years ago

10.3390/ijms20061343

Artificial Light at Night Alleviates the Negative Effect of Pb on Freshwater Ecosystems
Cited by: 8
Author(s): Gaozhong Pu, Danjuan Zeng, Ling Mo, Jingsheng Liao, Xiaxia Chen
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-14-65

FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets
Cited by: 9
Author(s): Bernard J. Pope, Tú Nguyen-Dumont, Fabrice Odefrey, Fleur Hammet, Russell Bell, Kayoko Tao, Sean V. Tavtigian, David E. Goldgar, Andrew Lonie, Melissa C. Southey, Daniel J. Park
Software Mentions: 2
Published: over 11 years ago

10.1186/gb-2010-11-4-r36

Optimized design and data analysis of tag-based cytosine methylation assays
Cited by: 76
Author(s): Masako Suzuki, Jun Qiang, Daniel Lia, Marién Pascual, Andrew McLellan, John M. Greally
Software Mentions: 2
Published: over 14 years ago

10.3389/fbioe.2021.664268

Calibration of a Heterogeneous Brain Model Using a Subject-Specific Inverse Finite Element Approach
Cited by: 14
Author(s): J. Sebastian Giudice, Ahmed Alshareef, Taotao Wu, Andrew K. Knutsen, Lucy V Hiscox, Curtis L. Johnson, Matthew B. Panzer
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2156-13-53

High throughput whole rumen metagenome profiling using untargeted massively parallel sequencing
Cited by: 68
Author(s): Elizabeth M. Ross, Peter J. Moate, Carolyn Bath, Sophie Davidson, Tim Sawbridge, Kathryn M. Guthridge, Ben Cocks, Ben J. Hayes
Software Mentions: 2
Published: over 12 years ago

10.4274/mirt.galenos.2019.47450

Evaluation of Myocardial Perfusion Imaging SPECT Parameters and Pharmacologic Stress Test with Adenosine Versus Coronary Angiography Findings: Are They Diagnostically Concordant?
Cited by: 3
Author(s): Zekiye Hasbek, Seyit Ahmet Ertürk, Ali Çakmakçılar, İbrahim Gül, Ahmet Yılmaz
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0075793

Massively Parallel DNA Sequencing Successfully Identifies New Causative Mutations in Deafness Genes in Patients with Cochlear Implantation and EAS
Cited by: 81
Author(s): Maiko Miyagawa, Shin‐ya Nishio, Takuo Ikeda, Kunihiro Fukushima, Shin‐ichi Usami
Software Mentions: 2
Published: almost 11 years ago

10.1038/sdata.2015.33

High resolution multi-facies realizations of sedimentary reservoir and aquifer analogs
Cited by: 25
Author(s): Peter Bayer, Alessandro Comunian, Dominik Höyng, Grégoire Mariéthoz
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0023204

Drug-Resistant Genotypes and Multi-Clonality in Plasmodium falciparum Analysed by Direct Genome Sequencing from Peripheral Blood of Malaria Patients
Cited by: 45
Author(s): Tim Robinson, Susana Campino, Sarah Auburn, Samuel Assefa, Spencer D. Polley, Magnus Manske, Bronwyn MacInnis, Kirk A. Rockett, G. Maslen, Mandy Sanders, Michael A. Quail, Peter L. Chiodini, Dominic P. Kwiatkowski, Taane G. Clark, Colin J. Sutherland
Software Mentions: 2
Published: about 13 years ago

10.1186/gm494

A simple consensus approach improves somatic mutation prediction accuracy
Cited by: 33
Author(s): David Goode, Sally M. Hunter, Maria A. Doyle, Tao Ma, Simone M. Rowley, David Y.H. Choong, Georgina L Ryland, Ian Campbell
Software Mentions: 2
Published: over 11 years ago

10.1038/s41431-018-0302-4

Diagnostics of short tandem repeat expansion variants using massively parallel sequencing and componential tools
Cited by: 9
Author(s): Rick H. de Leeuw, Dominique Garnier, Rosemarie M. J. M. Kroon, Corinne G.C. Horlings, Emile de Meijer, Henk P.J. Buermans, B.G.M. van Engelen, Peter de Knijff, Vered Raz
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.241

Composable languages for bioinformatics: the NYoSh experiment
Cited by: 7
Author(s): Maria Simi, Fabien Campagne
Software Mentions: 2
Published: over 10 years ago

10.18632/aging.202783

Development of the VISAGE enhanced tool and statistical models for epigenetic age estimation in blood, buccal cells and bones
Cited by: 36
Author(s): Anna Woźniak, Antonia Heidegger, Danuta Piniewska-Róg, Ewelina Pośpiech, Catarina Xavier, Aleksandra Pisarek, Ewa Kartasińska, Michał Boroń, Ana Freire-Aradas, Marta Wojtas, M. de la Puente, Harald Niederstätter, Rafał Płoski, Magdalena Spólnicka, Manfred Kayser, Christopher Phillips, Walther Parson, Wojciech Branicki
Software Mentions: 2
Published: over 3 years ago

10.3389/fpsyt.2021.691147

Nonsuicidal Self-Injury and Perfectionism: A Systematic Review
Cited by: 11
Author(s): Dóra Győri, Judit Balázs
Software Mentions: 2
Published: about 3 years ago

10.1186/s40064-016-3504-7

Texture-based block partitioning method for motion compensated frame interpolation
Cited by: 1
Author(s): Ho Sun Jung, Myung Hoon Sunwoo
Software Mentions: 2
Published: almost 8 years ago

10.1186/s13063-016-1388-z

Danish study of Non-Invasive testing in Coronary Artery Disease (Dan-NICAD): study protocol for a randomised controlled trial
Cited by: 41
Author(s): Louise Nissen, Simon Winther, Christin Isaksen, June Anita Ejlersen, Lau Brix, Gražina Urbonavičienė, Lars Frost, Lene Helleskov Madsen, Lars Knudsen, Samuel Schmidt, Niels Ramsing Holm, Michael Mæng, Mette Nyegaard, Hans Erik Bøtker, Morten Bøttcher
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0149623

Perceptions and Practices of Community Pharmacists towards Antimicrobial Stewardship in the State of Selangor, Malaysia
Cited by: 41
Author(s): Muhammad Umair Khan, Mohamed Azmi Hassali, Akram Ahmad, Ramadan Mohamed Mahmod Elkalmi, Syed Tabish Razi Zaidi, Swati Dhingra
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0078136

Non-Invasive Prenatal Testing of Trisomy 18 by an Epigenetic Marker in First Trimester Maternal Plasma
Cited by: 12
Author(s): Da Eun Lee, Shin Young Kim, Ji Hyae Lim, So Yeon Park, Hyun Mee Ryu
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0120732

Using Massive Parallel Sequencing for the Development, Validation, and Application of Population Genetics Markers in the Invasive Bivalve Zebra Mussel (Dreissena polymorpha)
Cited by: 14
Author(s): Luis Peñarrubia, Núria Sanz, Carles Plá, Oriol Vidal, Jordi Viñas
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0166781

Comprehensive Genetic Analysis of Japanese Autosomal Dominant Sensorineural Hearing Loss Patients
Cited by: 16
Author(s): Yoh-ichiro Iwasa, Shin‐ya Nishio, Shin‐ichi Usami
Software Mentions: 1
Published: almost 8 years ago

10.1007/s13402-016-0284-6

The genetic heterogeneity of colorectal cancer predisposition - guidelines for gene discovery
Cited by: 32
Author(s): Marc-Manuel Hahn, Richarda M. de Voer, Nicoline Hoogerbrugge, Marjolijn J. L. Ligtenberg, Roland P. Kuiper, Ad Geurts van Kessel
Software Mentions: 1
Published: over 8 years ago

10.3325/cmj.2014.55.163

Future directions of forensic DNA databases
Cited by: 35
Author(s): Jianye Ge, Hongyu Sun, Haiyan Li, Chao Liu, Jiangwei Yan, Bruce Budowle
Software Mentions: 1
Published: over 10 years ago

10.7759/cureus.14737

A Biopsychosocial Model-Based Clinical Approach in Myofascial Pain Syndrome: A Narrative Review
Cited by: 2
Author(s): Ioannis Koukoulithras, Minas Plexousakis, Spyridon Kolokotsios, Alexandra Stamouli, Christine Mavrogiannopoulou
Software Mentions: 1
Published: over 3 years ago

10.1007/s00294-013-0398-6

Tissue-specific mitochondrial heteroplasmy at position 16,093 within the same individual
Cited by: 16
Author(s): Kaarel Krjutškov, Marina Koltšina, Kelli Grand, Urmo Võsa, Martin Sauk, Neeme Tõnisson, Andres Salumets
Software Mentions: 1
Published: about 11 years ago

10.1007/s40142-013-0010-x

Non-invasive Prenatal Testing: Technologies, Clinical Assays and Implementation Strategies for Women’s Healthcare Practitioners
Cited by: 34
Author(s): Amy Swanson, Amy J. Sehnert, Sucheta Bhatt
Software Mentions: 1
Published: over 11 years ago

10.1042/ETLS20210204

Mitochondrial DNA in forensic use
Cited by: 14
Author(s): Denise Syndercombe Court
Software Mentions: 1
Published: about 3 years ago

10.3390/e21111091

Variational Autoencoder Reconstruction of Complex Many-Body Physics
Cited by: 16
Author(s): I. A. Luchnikov, Alexander Ryzhov, Pieter-Jan Stas, S. Filippov, Henni Ouerdane
Software Mentions: 1
Published: almost 5 years ago

10.3390/e21040407

Complex Modified Projective Synchronization of Fractional-Order Complex-Variable Chaotic System with Unknown Complex Parameters
Cited by: 1
Author(s): Ruoxun Zhang, Shiwen Feng, Shaopeng Yang
Software Mentions: 1
Published: over 5 years ago

10.1016/j.fsigen.2021.102550

Massively parallel sequencing and capillary electrophoresis of a novel panel of falcon STRs: Concordance with minisatellite DNA profiles from historical wildlife crime
Cited by: 4
Author(s): Jordan Beasley, Guy Shorrock, Rita Neumann, Celia A. May, Jon H. Wetton
Software Mentions: 1
Published: about 3 years ago

10.1016/j.fsigen.2018.03.012

A phylogenetic framework facilitates Y-STR variant discovery and classification via massively parallel sequencing
Cited by: 24
Author(s): Tunde I. Huszar, Mark A. Jobling, Jon H. Wetton
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2021.721338

Critical Considerations for the Design of Multi-Organ Microphysiological Systems (MPS)
Cited by: 13
Author(s): Mridu Malik, Yang Yang, Parinaz Fathi, Gretchen J. Mahler, Mandy B. Esch
Software Mentions: 1
Published: about 3 years ago

10.3389/fncom.2016.00055

Emotion Discrimination Using Spatially Compact Regions of Interest Extracted from Imaging EEG Activity
Cited by: 24
Author(s): Jorge Ivan Padilla-Buriticá, Juan David Martínez, Germán Castellanos-Domínguez
Software Mentions: 1
Published: about 8 years ago

10.3389/fgene.2014.00466

Co-barcoded sequence reads from long DNA fragments: a cost-effective solution for â€œperfect genomeâ€ sequencing
Cited by: 17
Author(s): Brock A. Peters, Jia Liu, Radoje Drmanac
Software Mentions: 1
Published: over 9 years ago

10.3389/fgene.2014.00027

Delayed development induced by toxicity to the host can be inherited by a bacterial-dependent, transgenerational effect
Cited by: 47
Author(s): Yael Fridmann-Sirkis, Shani Stern, Michael Elgart, Matana Galili, Amit Zeisel, Noam Shental, Yoav Soen
Software Mentions: 1
Published: over 10 years ago

10.3389/fnhum.2013.00547

Minimal self-models and the free energy principle
Cited by: 165
Author(s): Jakub Limanowski, Felix Blankenburg
Software Mentions: 1
Published: over 11 years ago

10.3389/fmed.2021.728866

An Individual Patient's “Body” on Chips—How Organismoid Theory Can Translate Into Your Personal Precision Therapy Approach
Cited by: 5
Author(s): Uwe Marx, Enrico Accastelli, Rachel David, Hendrik Erfurth, Leopold Koenig, Roland Lauster, Anja Patricia Ramme, Petra Reinke, Hans‐Dieter Volk, Annika Winter, Eva-Maria Dehne
Software Mentions: 1
Published: about 3 years ago

10.3389/fmicb.2020.509919

Deciphering the Role of Trehalose in Tripartite Symbiosis Among Rhizobia, Arbuscular Mycorrhizal Fungi, and Legumes for Enhancing Abiotic Stress Tolerance in Crop Plants
Cited by: 49
Author(s): Mahaveer P. Sharma, Monendra Grover, Dipanti Chourasiya, Abhishek Bharti, Richa Agnihotri, Hemant S. Maheshwari, Ashwani Pareek, Jeffrey S. Buyer, Sushil Sharma, Lukas Schütz, Natarajan Mathimaran, Sneh L. Singla‐Pareek, Julie Grossman, D. J. Bagyaraj
Software Mentions: 1
Published: almost 4 years ago

10.3389/fonc.2021.683419

FDA-Approved and Emerging Next Generation Predictive Biomarkers for Immune Checkpoint Inhibitors in Cancer Patients
Cited by: 70
Author(s): Ye Wang, Zhuang Tong, Wenhua Zhang, Weizhen Zhang, Anton Buzdin, Xiaojing Mu, Qing Yan, Xiaowen Zhao, Hui-Hua Chang, Mark Duhon, Xin Zhou, Gexin Zhao, Hong Chen, Xinmin Li
Software Mentions: 1
Published: over 3 years ago

10.3389/fphar.2021.695920

Kidney Organoid and Microphysiological Kidney Chip Models to Accelerate Drug Development and Reduce Animal Testing
Cited by: 15
Author(s): Wei-Yang Chen, Eric A. Evangelista, Jade Yang, Edward J. Kelly, Catherine K. Yeung
Software Mentions: 1
Published: about 3 years ago

10.3389/fpsyg.2021.671243

Ferdinand Karl Piëch: A Psychobiography of a Ruthless Manager and Ingenious Engineer
Cited by: 1
Author(s): Claude‐Hélène Mayer, Roelf van Niekerk, Nicola Wannenburg
Software Mentions: 1
Published: almost 3 years ago

10.4155/fsoa-2018-0059

Recovery of whole mitochondrial genome from compromised samples via multiplex PCR and massively parallel sequencing
Cited by: 6
Author(s): Maureen Peters Hickman, Kelly Grisedale, Brittania J. Bintz, Erin S Burnside, Erin Hanson, Jack Ballantyne, Mark Wilson
Software Mentions: 1
Published: almost 6 years ago

10.4155/fsoa-2017-0002

The ascendance of microphysiological systems to solve the drug testing dilemma
Cited by: 48
Author(s): Eva-Maria Dehne, Tobias Hasenberg, Uwe Marx
Software Mentions: 1
Published: over 7 years ago

10.3390/genes11080901

The STRidER Report on Two Years of Quality Control of Autosomal STR Population Datasets
Cited by: 8
Author(s): Martin Bodner, Walther Parson
Software Mentions: 1
Published: about 4 years ago

10.3390/genes12020128

A Continuous Statistical Phasing Framework for the Analysis of Forensic Mitochondrial DNA Mixtures
Cited by: 9
Author(s): Utpal Smart, Jennifer Churchill Cihlar, Sammed N. Mandape, Melissa Muenzler, Jonathan L. King, Bruce Budowle, August E. Woerner
Software Mentions: 1
Published: over 3 years ago

10.1186/gb-2011-12-9-r89

Targeted genomic capture and massively parallel sequencing to identify genes for hereditary hearing loss in middle eastern families
Cited by: 182
Author(s): Zippora Brownstein, Lilach M. Friedman, Hashem Shahin, Varda Oron-Karni, Nitzan Kol, Amal Abu Rayyan, Thomas Parzefall, Dorit Lev, Stavit A. Shalev, Moshe Frydman, Bella Davidov, Mordechai Shohat, Michele Rahile, Sari Lieberman, Ephrat Levy-Lahad, Ming K. Lee, Noam Shomron, Mary Claire King, Tom Walsh, Moien Kanaan, Karen B. Avraham
Software Mentions: 1
Published: over 13 years ago

10.1186/gm443

Development and validation of a robust automated analysis of plasma phospholipid fatty acids for metabolic phenotyping of large epidemiological studies
Cited by: 34
Author(s): Laura Y. Wang, Keith Summerhill, Carmen Rodriguez-Canas, Ian H. Mather, Pinal Patel, Michael Eiden, Stephen P. Young, Nita G. Forouhi, Albert Koulman
Software Mentions: 1
Published: over 11 years ago

10.1186/gm273

Identification of improved IL28B SNPs and haplotypes for prediction of drug response in treatment of hepatitis C using massively parallel sequencing in a cross-sectional European cohort
Cited by: 66
Author(s): Katherine R. Smith, Vijayaprakash Suppiah, K. O'Connor, Thomas Berg, Martin Weltman, Maria Lorena Abate, Ulrich Spengler, Margaret F. Bassendine, Gail V. Matthews, William L. Irving, Elizabeth E. Powell, Stephen M. Riordan, Golo Ahlenstiel, Graeme J. Stewart, Melanie Bahlo, Jacob George, David R. Booth
Software Mentions: 1
Published: over 13 years ago

10.1186/gm554

Copy number variants are a common cause of non-syndromic hearing loss
Cited by: 133
Author(s): A. Eliot Shearer, Diana L. Kolbe, Héla Azaiez, Christina M. Sloan, Kathy Frees, Alix Weaver, Erika T Clark, Carla Nishimura, E. Ann Black-Ziegelbein, Richard J.H. Smith
Software Mentions: 1
Published: over 10 years ago

10.1016/j.heliyon.2018.e00625

Population-scale whole genome sequencing identifies 271 highly polymorphic short tandem repeats from Japanese population
Cited by: 1
Author(s): Satoshi Hirata, Kazuyuki Kojima, Kazuharu Misawa, Olivier Gervais, Yosuke Kawai, Masao Nagasaki
Software Mentions: 1
Published: over 6 years ago

10.1186/1532-429X-11-38

Infarct evolution in man studied in patients with first-time coronary occlusion in comparison to different species - implications for assessment of myocardial salvage
Cited by: 105
Author(s): Erik Hedström, Henrik Engblom, Fredrik Frogner, Karin Åström-Olsson, Hans Öhlin, Stefan Jovinge, Håkan Arheden
Software Mentions: 1
Published: almost 15 years ago

10.1186/1532-429X-17-S1-P139

The extent of myocardium at risk for LAD, RCA and LCx using contrast enhanced SSFP and T2-weighted imaging
Cited by: 0
Author(s): David Nordlund, Einar Heiberg, Marcus Carlsson, Ernst-Torben Wilhelm Fründ, Pavel Hoffmann, Jan Erik Nordrehaug, Sasha Koul, Dan Atar, David Erlinge, Henrik Engblom, Håkan Arheden
Software Mentions: 1
Published: over 9 years ago

10.3390/jcm8091467

Ophthalmological Findings in Mucopolysaccharidoses
Cited by: 30
Author(s): Shizuka Tomatsu, Susanne Pitz, Ulrike Hampel
Software Mentions: 1
Published: about 5 years ago

10.1111/jep.12718

Repeat prescribing of medications: A system-centred risk management model for primary care organisations
Cited by: 11
Author(s): Julie C. Price, Shu Ling Man, Stephen T. Bartlett, Kate Taylor, Mark Dinwoodie, Paul Bowie
Software Mentions: 1
Published: over 7 years ago

10.1177/1049732320970488

Multidimensional Property Supplementation: A Method for Discovering and Describing Emergent Qualities of Concepts in Grounded Theory Research
Cited by: 3
Author(s): Linus Johnsson
Software Mentions: 1
Published: almost 4 years ago

10.1038/srep26191

Assessing mutant p53 in primary high-grade serous ovarian cancer using immunohistochemistry and massively parallel sequencing
Cited by: 142
Author(s): Alexander J. Cole, Trisha Dwight, Anthony J. Gill, Kristie-Ann Dickson, Ying Zhu, Adele Clarkson, Gregory B. Gard, Jayne Maidens, Susan Valmadre, Roderick Clifton‐Bligh, Deborah J. Marsh
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-34523-3

Lysosomal and network alterations in human mucopolysaccharidosis type VII iPSC-derived neurons
Cited by: 15
Author(s): Neus Bayó-Puxan, Ana Paula Terrasso, Sophie Creyssels, Daniel Simão, Christina Begon-Pescia, Marina Lavigne, Sara Salinas, Florence Bernex, Assumpció Bosch, Vasiliki Kalatzis, Thierry Levade, Ana María Cuervo, Philippe Lory, Antonella Consiglio, Catarina Brito, Eric J. Kremer
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-38245-4

Elucidation of the unique mutation spectrum of severe hearing loss in a Vietnamese pediatric population
Cited by: 15
Author(s): Jae Joon Han, Pham Dinh Nguyen, Doo Yi Oh, Jin Hee Han, Ah Reum Kim, Min Young Kim, Hye Rim Park, Lam Huyen Tran, Nguyễn Hữu Dũng, Ja Won Koo, Jun Ho Lee, Seung Ha Oh, Hoàng Anh Vũ, Byung Yoon Choi
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-52869-0

Changes in ventricular depolarisation vectors during exercise caused by regional myocardial ischaemia
Cited by: 0
Author(s): C W Vellani, Satwat Hashmi, Sadia Mahmud, Mohammad Yusuf, Safia Awan, Khawar Kazmi
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-60259-0

Prevalence and clinical features of hearing loss caused by EYA4 variants
Cited by: 17
Author(s): Jun Shinagawa, Hideaki Moteki, Shin‐ya Nishio, Kenji Ohyama, Koji Otsuki, Satoshi Iwasaki, S. Masuda, Chie Oshikawa, Yumi Ohta, Yasuhiro Arai, Masahiro Takahashi, Naoko Sakuma, Satoko Abe, Yuika Sakurai, Hirofumi Sakaguchi, Takashi Ishino, Natsumi Uehara, Shin‐ichi Usami
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-69137-1

Identification of sequence polymorphisms at 58 STRs and 94 iiSNPs in a Tibetan population using massively parallel sequencing
Cited by: 17
Author(s): Dan Peng, Yinming Zhang, Han Ren, Haixia Li, Ran Li, Xuefeng Shen, Nana Wang, Erwen Huang, Riga Wu, Hongyu Sun
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-021-82814-z

Massively parallel sequencing of 25 autosomal STRs including SE33 in four population groups for forensic applications
Cited by: 6
Author(s): Ye‐Lim Kwon, Bo Min Kim, Eun Young Lee, Kyoung Jin Shin
Software Mentions: 1
Published: over 3 years ago

10.3390/toxins12090588

Comparison between Conventional Blind Injections and Ultrasound-Guided Injections of Botulinum Toxin Type A into the Masseter: A Clinical Trial
Cited by: 11
Author(s): Hyungkyu Bae, Ji-Soo Kim, Kyle K. Seo, Kyung Seok Hu, Seong Taek Kim, Hee Jin Kim
Software Mentions: 1
Published: about 4 years ago

10.1007/s00414-021-02569-0

Progress in the implementation of massively parallel sequencing for forensic genetics: results of a European-wide survey among professional users
Cited by: 11
Author(s): T.E. Gross, Jan Fleckhaus, Peter M. Schneider
Software Mentions: 1
Published: over 3 years ago

10.1007/s00414-019-02201-2

Inter-laboratory study on standardized MPS libraries: evaluation of performance, concordance, and sensitivity using mixtures and degraded DNA
Cited by: 15
Author(s): Petra Müller, Christian Sell, Thorsten Hadrys, Jonas Hedman, Steffi Bredemeyer, François-Xavier Laurent, Lutz Roewer, Sabrina Achtruth, Maja Sidstedt, Titia Sijen, Marc Trimborn, Natalie Weiler, Sascha Willuweit, Ingo Bastisch, Walther Parson
Software Mentions: 1
Published: almost 5 years ago

10.1002/fld.4248

SPH modelling of depth‐limited turbulent open channel flows over rough boundaries
Cited by: 39
Author(s): Ehsan Kazemi, Andrew Nichols, Simon Tait, Songdong Shao
Software Mentions: 1
Published: over 8 years ago

10.1186/2041-2223-5-11

Molecular genetic investigative leads to differentiate monozygotic twins
Cited by: 5
Author(s): Bruce Budowle
Software Mentions: 1
Published: over 10 years ago

10.1186/s13052-018-0549-y

The new frame for Mucopolysaccharidoses
Cited by: 4
Author(s): Rossella Parini, Andrea Biondi
Software Mentions: 1
Published: almost 6 years ago

10.1007/s10545-012-9555-1

Respiratory and sleep disorders in mucopolysaccharidosis
Cited by: 119
Author(s): Kenneth I. Berger, Simone Chaves Fagondes, Roberto Giugliani, Karen Hardy, Kuo Sheng Lee, Ciarán B. McArdle, Maurizio Scarpa, Martin J. Tobin, Susan A. Ward, David M. Rapoport
Software Mentions: 1
Published: almost 12 years ago

10.3390/ijms21020500

Genome Editing for Mucopolysaccharidoses
Cited by: 30
Author(s): Édina Poletto, Guilherme Baldo, Natalia Gomez‐Ospina
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms22136877

A Rapid Pipeline for Pollen- and Anther-Specific Gene Discovery Based on Transcriptome Profiling Analysis of Maize Tissues
Cited by: 5
Author(s): Yannan Shi, Yao Li, Yun Guo, Eli J. Borrego, Zhengyi Wei, Ren Hong, Zhengqiang Ma, Yongjun Yan
Software Mentions: 1
Published: about 3 years ago

10.2196/jmir.7302

Moving the Agenda on Noncommunicable Diseases: Policy Implications of Mobile Phone Surveys in Low and Middle-Income Countries
Cited by: 26
Author(s): George Pariyo, Adaeze C. Wosu, Dustin G. Gibson, Alain Labrique, Joseph Ali, Adnan A. Hyder
Software Mentions: 1
Published: over 7 years ago

10.2196/jmir.6938

An Internet-Based Method for Extracting Nursing Home Resident Sedative Medication Data From Pharmacy Packing Systems: Descriptive Evaluation
Cited by: 2
Author(s): Tristan Ling, Peter Gee, JL Westbury, Ivan Bindoff, Gregory M. Peterson
Software Mentions: 1
Published: about 7 years ago

10.2196/jmir.7329

Health Surveys Using Mobile Phones in Developing Countries: Automated Active Strata Monitoring and Other Statistical Considerations for Improving Precision and Reducing Biases
Cited by: 36
Author(s): Alain Labrique, Emily Blynn, Saifuddin Ahmed, Dustin G. Gibson, George Pariyo, Adnan A. Hyder
Software Mentions: 1
Published: over 7 years ago

10.2196/jmir.7326

Ethics Considerations in Global Mobile Phone-Based Surveys of Noncommunicable Diseases: A Conceptual Exploration
Cited by: 28
Author(s): Joseph Ali, Alain Labrique, Kara Gionfriddo, George Pariyo, Dustin G. Gibson, Bridget Pratt, Molly Deutsch-Feldman, Adnan A. Hyder
Software Mentions: 1
Published: over 7 years ago

10.1186/s13023-018-0817-3

Beneath the floor: re-analysis of neurodevelopmental outcomes in untreated Hurler syndrome
Cited by: 16
Author(s): Elsa Shapiro, Chester B. Whitley, Julie B. Eisengart
Software Mentions: 1
Published: over 6 years ago

10.1186/s13023-020-01382-z

Critical clinical situations in adult patients with Mucopolysaccharidoses (MPS)
Cited by: 7
Author(s): Karolina M. Stępień, A.K. Gevorkyan, Christian J. Hendriksz, Т. В. Лобжанидзе, Jordi Pérez‐López, Govind Tol, M. del Toro Riera, Н. Д. Вашакмадзе, Christina Lampe
Software Mentions: 1
Published: over 4 years ago

10.14573/altex.2001241

Biology-inspired microphysiological systems to advance medicines for patient benefit and animal welfare
Cited by: 95
Author(s): Uwe Marx, T Akabane, T. Andersson, Elizabeth Baker, Mario Beilmann, Sonja Beken, Susanne Brendler‐Schwaab, Murat Cirit, Rachel David, Eva-Maria Dehne, Isabell Durieux, Lorna Ewart, Fitzpatrick Sc, Olivier Frey, Florian Fuchs, Griffith Lg, Hamilton Ga, Thomas Hartung, Julia Hoeng, Helena T. Högberg, Hughes Dj, Ingber De, Anita Iskandar, Toshiyuki Kanamori, Hajime Kojima, Jochen Kuehnl, Marcel Leist, Li B, Peter Loskill, Mendrick Dl, Thomas Neumann, Giorgia Pallocca, Ivan Rusyn, Lena Smirnova, Thomas Steger‐Hartmann, Tagle Da, Alexander G. Tonevitsky, Sergej Tsyb, Martin Trapečar, Van de Water B, Van den Eijnden-van Raaij J, Paul Vulto, K. Watanabe, Armin Wolf, Xiaobing Zhou, Adrian Roth
Software Mentions: 1
Published: over 4 years ago

10.3390/nu13082553

Macular Pigment Reflectometry: Developing Clinical Protocols, Comparison with Heterochromatic Flicker Photometry and Individual Carotenoid Levels
Cited by: 8
Author(s): Pinakin Gunvant Davey, Richard B. Rosen, Dennis L Gierhart
Software Mentions: 1
Published: about 3 years ago

10.1007/s00216-020-02490-2

PCR inhibition in qPCR, dPCR and MPS—mechanisms and solutions
Cited by: 113
Author(s): Maja Sidstedt, Peter Rådström, Jonas Hedman
Software Mentions: 1
Published: over 4 years ago

10.1007/s00216-016-9537-5

Development and validation of an automated liquid-liquid extraction GC/MS method for the determination of THC, 11-OH-THC, and free THC-carboxylic acid (THC-COOH) from blood serum
Cited by: 30
Author(s): Kirsten Purschke, Sonja Heinl, Oliver Lerch, Freidoon Erdmann, Florian Veit
Software Mentions: 1
Published: over 8 years ago

10.1007/s10439-017-1848-y

Predicting Cumulative and Maximum Brain Strain Measures From HybridIII Head Kinematics: A Combined Laboratory Study and Post-Hoc Regression Analysis
Cited by: 26
Author(s): Brooklynn M. Knowles, Christopher R. Dennison
Software Mentions: 1
Published: over 7 years ago

10.1186/s12859-016-1099-1

OMWare: a tool for efficient assembly of genome-wide physical maps
Cited by: 5
Author(s): Aaron R. Sharp, Joshua A. Udall
Software Mentions: 1
Published: about 8 years ago

10.1186/s12896-017-0410-1

Computer face-matching technology using two-dimensional photographs accurately matches the facial gestalt of unrelated individuals with the same syndromic form of intellectual disability
Cited by: 32
Author(s): Tracy Dudding‐Byth, Anne Baxter, Elizabeth G. Holliday, Anna Hackett, Sheridan O’Donnell, Susan White, John Attia, Han G. Brunner, Bert de Vries, David A. Koolen, Tjitske Kleefstra, Seshika Ratwatte, Carlos Riveros, Steve Brain, Brian C. Lovell
Software Mentions: 1
Published: almost 7 years ago

Projects: cran: MPS

Papers Mentioning MPS 128