Packages with Software Mentions in Scientific Papers

MDP is a Python library for building complex data processing software by combining widely used machine learning algorithms into pipelines and networks.
Papers that mentioned: 14

Very Likely Science (90)

pypi: yhat

Python client for Yhat (http://yhat.com/)
Papers that mentioned: 14

Very Likely Science (65)

cran: LLM

Logit Leaf Model Classifier for Binary Classification
Papers that mentioned: 14

Very Likely Science (75)

pypi: neo4j

Neo4j Bolt driver for Python
Papers that mentioned: 14

Very Likely Science (65)

pypi: reg

Clever dispatch
Papers that mentioned: 14

Very Likely Science (65)

pypi: mri

Papers that mentioned: 14

Unlikely Science (0)

pypi: molecular

A toolkit for molecular dynamics simulations
Papers that mentioned: 14

Very Likely Science (75)

bioconductor: trackViewer

A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data
Papers that mentioned: 14

Very Likely Science (100)

pypi: Reuters

Reuters ticker information retriever for Python
Papers that mentioned: 14

Very Likely Science (65)

cran: CTM

A Text Mining Toolkit for Chinese Document
Papers that mentioned: 14

Very Likely Science (75)

pypi: flow

columnflow
Papers that mentioned: 14

Likely Science (55)

pypi: me

me
Papers that mentioned: 14

Very Likely Science (65)

cran: entropy

Estimation of Entropy, Mutual Information and Related Quantities
Papers that mentioned: 14

Very Likely Science (80)

pypi: microsoft

This package name is reserved by Microsoft Corporation
Papers that mentioned: 14

Unlikely Science (5)

bioconductor: cqn

Conditional quantile normalization
Papers that mentioned: 14

Very Likely Science (90)

pypi: pylab

Papers that mentioned: 14

Unlikely Science (0)

pypi: entropy

entropy is a command line friend that helps you reduce entropy in your life
Papers that mentioned: 14

Very Likely Science (65)

cran: mri

Modified Rand and Wallace Indices
Papers that mentioned: 14

Very Likely Science (83)

cran: yaml

Methods to Convert R Data to YAML and Back
Papers that mentioned: 14

Very Likely Science (100)

cran: DDD

Diversity-Dependent Diversification
Papers that mentioned: 14

Very Likely Science (75)

pypi: EB

Ensemble Builder
Papers that mentioned: 14

Very Likely Science (65)

cran: DCluster

Functions for the Detection of Spatial Clusters of Diseases
Papers that mentioned: 14

Very Likely Science (75)

cran: qcc

Quality Control Charts
Papers that mentioned: 14

Very Likely Science (100)

cran: ff

Memory-Efficient Storage of Large Data on Disk and Fast Access Functions
Papers that mentioned: 14

Very Likely Science (75)

bioconductor: SGSeq

Splice event prediction and quantification from RNA-seq data
Papers that mentioned: 14

Very Likely Science (75)

pypi: motif

motif - Python module written by Wu Fuheng
Papers that mentioned: 14

Very Likely Science (65)

bioconductor: MEAT

Muscle Epigenetic Age Test
Papers that mentioned: 14

Very Likely Science (100)

pypi: FireWorks

FireWorks workflow software
Papers that mentioned: 14

Very Likely Science (100)

cran: metasens

Statistical Methods for Sensitivity Analysis in Meta-Analysis
Papers that mentioned: 14

Very Likely Science (100)

cran: MSG

Data and Functions for the Book Modern Statistical Graphics
Papers that mentioned: 14

Very Likely Science (85)

cran: hydroGOF

Goodness-of-Fit Functions for Comparison of Simulated and Observed Hydrological Time Series
Papers that mentioned: 14

Very Likely Science (100)

bioconductor: iSeq

Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models
Papers that mentioned: 14

Very Likely Science (75)

bioconductor: geneplotter

Graphics related functions for Bioconductor
Papers that mentioned: 14

Very Likely Science (100)

cran: SnowballC

Snowball Stemmers Based on the C 'libstemmer' UTF-8 Library
Papers that mentioned: 14

Very Likely Science (95)

bioconductor: iPAC

Identification of Protein Amino acid Clustering
Papers that mentioned: 14

Very Likely Science (98)

pypi: statannot

add statistical annotations on an existing boxplot/barplot generated by seaborn.
Papers that mentioned: 14

Very Likely Science (75)

pypi: Pebble

Threading and multiprocessing eye-candy.
Papers that mentioned: 14

Likely Science (40)

bioconductor: CoGAPS

Coordinated Gene Activity in Pattern Sets
Papers that mentioned: 14

Very Likely Science (100)

pypi: fastphase

Python implementation of the fastPHASE model
Papers that mentioned: 14

Very Likely Science (80)

bioconductor: ATACseqQC

ATAC-seq Quality Control
Papers that mentioned: 14

Very Likely Science (100)

cran: snp.plotter

snp.plotter
Papers that mentioned: 14

Very Likely Science (75)

bioconductor: BAC

Papers that mentioned: 14

Unlikely Science (0)

cran: iml

Interpretable Machine Learning
Papers that mentioned: 14

Very Likely Science (96)

pypi: POET

Calculate the orbital evolution of a planet-star system.
Papers that mentioned: 14

Very Likely Science (65)

pypi: picardtools

python3 interface with Picard Tools from Broad institute
Papers that mentioned: 14

Very Likely Science (85)

pypi: spike

Papers that mentioned: 14

Very Likely Science (65)

pypi: PSCAD

A network toolkit that can be used to scan, sniff and discover hosts.
Papers that mentioned: 14

Very Likely Science (90)

pypi: puma

Python Unified Multi-tasking API (PUMA)
Papers that mentioned: 14

Very Likely Science (90)

pypi: SpatialDE

Spatial and Temporal DE test
Papers that mentioned: 14

Very Likely Science (100)

pypi: Taobao

Papers that mentioned: 14

Very Likely Science (65)

pypi: Velox

Batteries-included tooling for handling promotion, versioning, and zero-downtime requirments of Machine Learning models in production.
Papers that mentioned: 14

Very Likely Science (90)

pypi: sra

A simple deploy tool
Papers that mentioned: 14

Very Likely Science (65)

A wrapper around several APIs. Response is a request object, which is much extendable for custom error handling. The Available APIs are: EANData Locu Spoonacular Walmart Zomato
Papers that mentioned: 14

Very Likely Science (65)

pypi: uWSGI

The uWSGI server
Papers that mentioned: 14

Very Likely Science (65)

pypi: pdftotext

Simple PDF text extraction
Papers that mentioned: 14

Very Likely Science (65)

pypi: sPyNNaker

Tools for simulating neural models generated using PyNN 0.9 on the SpiNNaker platform
Papers that mentioned: 14

Very Likely Science (100)

cran: flow

View and Browse Code Using Flow Diagrams
Papers that mentioned: 14

Very Likely Science (79)

bioconductor: RBM

RBM: a R package for microarray and RNA-Seq data analysis
Papers that mentioned: 14

Very Likely Science (100)

cran: camtrapR

Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses
Papers that mentioned: 14

Very Likely Science (87)

pypi: ff

A kit for files finding
Papers that mentioned: 14

Very Likely Science (65)

pypi: glpk

PyGLPK, a Python module encapsulating GLPK.
Papers that mentioned: 14

Very Likely Science (80)

cran: ANN2

Artificial Neural Networks for Anomaly Detection
Papers that mentioned: 14

Very Likely Science (95)

cran: RStoolbox

Tools for Remote Sensing Data Analysis
Papers that mentioned: 14

Very Likely Science (85)

pypi: Mikado

A Python3 annotation program to select the best gene model in each locus
Papers that mentioned: 14

Very Likely Science (100)

cran: ChemoSpec

Exploratory Chemometrics for Spectroscopy
Papers that mentioned: 14

Very Likely Science (100)

pypi: MobileElementFinder

Mobile Genetic Element prediction
Papers that mentioned: 14

Very Likely Science (75)

cran: shinycssloaders

Add Loading Animations to a 'shiny' Output While It's Recalculating
Papers that mentioned: 14

Very Likely Science (75)

pypi: exp

Python tool do design and run experiments with global optimisation and grid search
Papers that mentioned: 14

Very Likely Science (95)

cran: deal

Learning Bayesian Networks with Mixed Variables
Papers that mentioned: 14

Very Likely Science (85)

bioconductor: GlobalAncova

Global test for groups of variables via model comparisons
Papers that mentioned: 14

Very Likely Science (90)

pypi: deal

**Deal** is a Python library for [design by contract][wiki] (DbC) programming.
Papers that mentioned: 14

Very Likely Science (100)

bioconductor: puma

Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)
Papers that mentioned: 14

Very Likely Science (100)