Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: trackViewer
https://packages.ecosyste.ms/registries/bioconductor.org/packages/trackViewer
A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data
1 version
Latest release: 10 months ago
3 dependent packages
44,759 downloads total
Papers Mentioning trackViewer 14
10.1371/journal.pcbi.1007814
Genome-wide prediction of topoisomerase IIβ binding by architectural factors and chromatin accessibilityCited by: 4
Author(s): Pedro Manuel Martínez-García, Miguel García-Torres, Federico Divina, José Terrón-Bautista, Irene Delgado‐Sainz, Felipe Cortés‐Ledesma
Software Mentions: 8
Published: over 3 years ago
10.1186/s12859-015-0568-2
coMET: visualisation of regional epigenome-wide association scan results and DNA co-methylation patternsCited by: 95
Author(s): Tiphaine Martin, İdil Yet, Pei-Chien Tsai, Jordana T. Bell
Software Mentions: 7
Published: over 9 years ago
10.1136/jitc-2021-002467
Tumor microenvironment evaluation promotes precise checkpoint immunotherapy of advanced gastric cancerCited by: 75
Author(s): Dongqiang Zeng, Jiani Wu, Hongyu Luo, Yong Li, Jian Xiao, Jianjun Peng, Zilan Ye, Rui Zhou, Yunfang Yu, Gaofeng Wang, Na Huang, Jianhua Wu, Xiaoxiang Rong, Li Sun, Huiying Sun, Wenjun Qiu, Yuting Xue, Jianping Bin, Yulin Liao, Li N, Min Shi, Kyoung‐Mee Kim, Wangjun Liao
Software Mentions: 7
Published: almost 3 years ago
10.1371/journal.pone.0215838
Mutplot: An easy-to-use online tool for plotting complex mutation data with flexibilityCited by: 11
Author(s): Weiwei Zhang, Cheng Wang, Xuan Zhang
Software Mentions: 6
Published: about 5 years ago
10.3390/pathogens10091109
Clinico-Genomic Analysis Reveals Mutations Associated with COVID-19 Disease Severity: Possible Modulation by RNA StructureCited by: 6
Author(s): Priyanka Mehta, Shanmukh Alle, Anusha Chaturvedi, Aparna Swaminathan, Sheeba Saifi, Ranjeet Maurya, Partha Chattopadhyay, Priti Devi, Ruchi Chauhan, Akshay Kanakan, Janani Srinivasa Vasudevan, Ramanathan Sethuraman, Subramanian Chidambaram, Mashrin Srivastava, Avinash Chakravarthi, Johnny Jacob, Madhuri Namagiri, Varma Konala, Sujeet Jha, U. Deva Priyakumar, P. K. Vinod, Rajesh Pandey
Software Mentions: 6
Published: almost 3 years ago
10.3389/fmed.2021.737007
Severe SARS-CoV-2 Breakthrough Reinfection With Delta Variant After Recovery From Breakthrough Infection by Alpha Variant in a Fully Vaccinated Health WorkerCited by: 64
Author(s): Jayanthi Shastri, Swapneil Parikh, Veena Aggarwal, Sachee Agrawal, Nirjhar Chatterjee, Rajit Shah, Priti Devi, Priyanka Mehta, Rajesh Pandey
Software Mentions: 4
Published: almost 3 years ago
10.1016/j.jbc.2021.101049
Fused in sarcoma regulates DNA replication timing and kineticsCited by: 5
Author(s): Weiyan Jia, Sang Hwa Kim, Mark Scalf, Peter Tonzi, Robert Millikin, William Guns, Lu Liu, Adam S. Mastrocola, Lloyd M. Smith, Tony T. Huang, Randal S. Tibbetts
Software Mentions: 4
Published: almost 3 years ago
10.3389/fmicb.2021.653399
Respiratory Co-Infections: Modulators of SARS-CoV-2 Patients’ Clinical Sub-PhenotypeCited by: 21
Author(s): Priyanka Mehta, Shweta Sahni, Samreen Siddiqui, Neha Mishra, Pooja Sharma, Sachin Sharma, Akansha Tyagi, Partha Chattopadhyay, A Vivekanand, Priti Devi, Azka Khan, Swati Waghdhare, Sandeep Budhiraja, Bharathram Uppili, Ranjeet Maurya, Vivek Nangia, Uzma Shamim, Pranjal Pratim Hazarika, Saruchi Wadhwa, Nishu Tyagi, Arun Dewan, Bansidhar Tarai, Poonam Das, Mohammed Faruq, Anurag Agrawal, Sujeet Jha, Rajesh Pandey
Software Mentions: 3
Published: about 3 years ago
10.12688/f1000research.25390.2
A proposed molecular mechanism for pathogenesis of severe RNA-viral pulmonary infectionsCited by: 8
Author(s): Peter K. Rogan, Ben C. Shirley
Software Mentions: 3
Published: over 3 years ago
10.1186/s40478-020-00963-0
A novel Cas9-targeted long-read assay for simultaneous detection of IDH1/2 mutations and clinically relevant MGMT methylation in fresh biopsies of diffuse gliomaCited by: 23
Author(s): Thidathip Wongsurawat, Piroon Jenjaroenpun, Annick De Loose, Duah Alkam, David W. Ussery, Intawat Nookaew, Yuet-Kin Leung, Shuk‐Mei Ho, John D. Day, Analiz Rodriguez
Software Mentions: 2
Published: about 4 years ago
10.3390/genes12010066
The LDLR, APOB, and PCSK9 Variants of Index Patients with Familial Hypercholesterolemia in RussiaCited by: 27
Author(s): А. Н. Мешков, А. И. Ершова, А. В. Киселева, Evgenia Zotova, Evgeniia A. Sotnikova, А. В. Петухова, Anastasia A. Zharikova, П. П. Малышев, Т. А. Рожкова, А. В. Блохина, А. С. Лимонова, Vasily Ramensky, Mikhail G. Divashuk, Zukhra B. Khasanova, А. А. Букаева, О. В. Курилова, О. П. Скирко, M. S. Pokrovskaya, Valeriya M. Mikova, Ekaterina A. Snigir, Aleksandra I. Akinshina, Sergey I. Mitrofanov, Daria A. Kashtanova, Valentin V. Makarov, В. В. Кухарчук, S. А. Boytsov, S. M. Yudin, О. М. Drapkina
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2021.726116
Case Report: Identification of a Novel Homozygous Mutation in GPD1 Gene of a Chinese Child With Transient Infantile HypertriglyceridemiaCited by: 4
Author(s): Lin Hai-hua, Youhong Fang, Han Lin, Jie Chen, Jingan Lou, Jindan Yu
Software Mentions: 1
Published: almost 3 years ago
10.1038/s41598-020-61048-5
Adapting SureSelect enrichment protocol to the Ion Torrent S5 platform in molecular diagnostics of craniosynostosisCited by: 3
Author(s): Ewelina Bukowska‐Olech, Delfina Popiel, Grzegorz Koczyk, Anna Sowińska‐Seidler, Magdalena Socha, Bartosz Wojciechowicz, Adam Dawidziuk, Dawid Larysz, Aleksander Jamsheer
Software Mentions: 1
Published: over 4 years ago
10.1007/s11262-021-01871-8
Sensitivity of two SARS-CoV-2 variants with spike protein mutations to neutralising antibodiesCited by: 3
Author(s): Katharina Müller, Philipp Girl, Andreas Giebl, Stefanie Gruetzner, Markus Antwerpen, Elham Khatamzas, Roman Wölfel, Heiner von Buttlar
Software Mentions: 1
Published: almost 3 years ago