Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1136/jitc-2021-002467

https://doi.org/10.1136/jitc-2021-002467

Tumor microenvironment evaluation promotes precise checkpoint immunotherapy of advanced gastric cancer

Cited by: 75
Author(s): Dongqiang Zeng, Jiani Wu, Hongyu Luo, Yong Li, Jian Xiao, Jianjun Peng, Zilan Ye, Rui Zhou, Yunfang Yu, Gaofeng Wang, Na Huang, Jianhua Wu, Xiaoxiang Rong, Li Sun, Huiying Sun, Wenjun Qiu, Yuting Xue, Jianping Bin, Yulin Liao, Li N, Min Shi, Kyoung‐Mee Kim, Wangjun Liao
Published: over 3 years ago

Software Mentions 7

bioconductor: ChAMP
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Papers that mentioned: 208
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Papers that mentioned: 276
bioconductor: trackViewer
A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data
Papers that mentioned: 14
cran: deconstructSigs
Identifies Signatures Present in a Tumor Sample
Papers that mentioned: 85
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
cran: survminer
Drawing Survival Curves using 'ggplot2'
Papers that mentioned: 1,473