Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: iSeq

https://packages.ecosyste.ms/registries/bioconductor.org/packages/iSeq

Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models
1 version
Latest release: about 1 year ago
22,894 downloads total

Papers Mentioning iSeq 14

Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding
Cited by: 5
Author(s): Ryohei Nakao, Ryutei Inui, Yoshihisa Akamatsu, Masuji Goto, Hideyuki Doi, Shiro Matsuoka
Software Mentions: 5
Published: over 3 years ago

10.1186/1471-2105-14-169

Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data
Cited by: 21
Author(s): Yanchun Bao, Veronica Vinciotti, Ernst Wit, Peter A C ‘t Hoen
Software Mentions: 5
Published: over 11 years ago

10.1128/mSystems.00268-20

Impact of Glyphosate on the Honey Bee Gut Microbiota: Effects of Intensity, Duration, and Timing of Exposure
Cited by: 49
Author(s): Erick V. S. Motta, Nancy A. Moran
Software Mentions: 4
Published: about 4 years ago

10.1128/AEM.01150-20

Oral or Topical Exposure to Glyphosate in Herbicide Formulation Impacts the Gut Microbiota and Survival Rates of Honey Bees
Cited by: 68
Author(s): Erick V. S. Motta, Myra Mak, Tyler K. De Jong, J. Elijah Powell, Angela C. O’Donnell, Kristin J. Suhr, Ian M. Riddington, Nancy A. Moran
Software Mentions: 3
Published: about 4 years ago

10.1038/s42003-018-0165-9

i-BLESS is an ultra-sensitive method for detection of DNA double-strand breaks
Cited by: 38
Author(s): Anna Biernacka, Yingjie Zhu, Magdalena Skrzypczak, Romain Forey, Benjamín Pardo, Marta Grzelak, Jules Nde, Abhishek Mitra, Andrzej Kudlicki, Nicola Crosetto, Philippe Pasero, Maga Rowicka, Krzysztof Ginalski
Software Mentions: 3
Published: about 6 years ago

10.1186/s13059-019-1691-6

Measuring sequencer size bias using REcount: a novel method for highly accurate Illumina sequencing-based quantification
Cited by: 28
Author(s): Daryl M. Gohl, Alessandro Magli, John Garbe, Aaron Becker, Darrell M. Johnson, Shea Anderson, Benjamin Auch, Bradley Billstein, Elyse Froehling, Shana L. McDevitt, Kenneth B. Beckman
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.62365

A large accessory protein interactome is rewired across environments
Cited by: 23
Author(s): Zhimin Liu, Darach Miller, Fangfei Li, Xianan Liu, Sasha F. Levy
Software Mentions: 3
Published: about 4 years ago

10.1186/s12864-020-06843-0

Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms
Cited by: 21
Author(s): Austin N. Southard-Smith, Alan J. Simmons, Bob Chen, Angela L. Jones, Marisol A. Ramirez Solano, Paige N. Vega, Cherie’ R. Scurrah, Yue Zhao, Michael J. Brenan, Jiekun Xuan, Martha J. Shrubsole, Ely Porter, Xi Chen, Colin J. H. Brenan, Qi Liu, Lauren N. M. Quigley, Ken S. Lau
Software Mentions: 2
Published: over 4 years ago

10.1089/crispr.2020.0047

One-Step Homology Mediated CRISPR-Cas Editing in Zygotes for Generating Genome Edited Cattle
Cited by: 12
Author(s): Ki‐Eun Park, Juli Foster Frey, Jerel Waters, Sean Simpson, Chris Coutu, Sarah J. Plummer, Matthew Campbell, David M. Donovan, Bhanu P. Telugu
Software Mentions: 2
Published: almost 4 years ago

10.1534/g3.116.034207

iSeq: A New Double-Barcode Method for Detecting Dynamic Genetic Interactions in Yeast
Cited by: 31
Author(s): Mia Jaffe, Gavin Sherlock, Sasha F. Levy
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0206194

Miniaturization and optimization of 384-well compatible RNA sequencing library preparation
Cited by: 39
Author(s): Madeline Y Mayday, Lillian M. Khan, Eric D. Chow, Matt S Zinter, Joseph L. DeRisi
Software Mentions: 1
Published: almost 6 years ago

10.1128/MRA.00383-20

Complete Genome Sequences of SARS-CoV-2 Strains Detected in Malaysia
Cited by: 12
Author(s): Yoong Min Chong, I‐Ching Sam, Sasheela Ponnampalavanar, Sharifah Faridah Syed Omar, Adeeba Kamarulzaman, Vijayan Munusamy, Chee Kuan Wong, Fadhil Hadi Jamaluddin, Han Ming Gan, Jennifer Chong, Cindy Shuan Ju Teh, Yoke Fun Chan
Software Mentions: 1
Published: over 4 years ago

10.15252/msb.20177985

Mapping <scp>DNA</scp> damage‐dependent genetic interactions in yeast via party mating and barcode fusion genetics
Cited by: 22
Author(s): J. Javier Díaz-Mejía, Albi Celaj, Joseph Mellor, Atina G. Coté, Attila Bálint, Brandon Ho, Pritpal Bansal, Fatemeh Shaeri, Marinella Gebbia, Jochen Weile, Marta Verby, Anna A. Karkhanina, Yifan Zhang, Cassandra Wong, Justin Rich, D'Arcy Prendergast, Gaurav Gupta, Sedide B. Ozturk, Daniel Durocher, Grant W. Brown, Frederick P. Roth
Software Mentions: 1
Published: over 6 years ago

10.1186/s13071-021-04852-w

iSeq 100 for metagenomic pathogen screening in ticks
Cited by: 6
Author(s): Ju Yeong Kim, Myung‐hee Yi, Alghurabi Areej Sabri Mahdi, Tai Soon Yong
Software Mentions: 1
Published: over 3 years ago