Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: ggplot2

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
48 versions
Latest release: about 1 year ago
4,921 dependent packages
2,865,232 downloads last month

Papers Mentioning ggplot2 11,441

10.3389/fonc.2019.01361
Development and Validation of an RNA-Seq-Based Prognostic Signature in Neuroblastoma
Cited by: 28
Author(s): Jianguo Zhou, Bo Liang, Sanli Jin, Hui-Ling Liao, Guocheng Du, Long Cheng, Hu Ma, Udo S. Gaipl
Software Mentions: 12
Published: almost 5 years ago
10.1038/s41598-019-41592-5
A Genome-Wide Analysis of the Penumbral Volume in Inbred Mice following Middle Cerebral Artery Occlusion
Cited by: 1
Author(s): Robert F. Rudy, Nareerat Charoenvimolphan, Baogang Qian, Annerose Berndt, Robert M. Friedlander, Scott T. Weiss, Rose Du
Software Mentions: 12
Published: over 5 years ago
10.1155/2021/5575286
Screening and Bioinformatics Analysis of Competitive Endogenous RNA Regulatory Network ––Related to Circular RNA in Breast Cancer
Cited by: 3
Author(s): Tao Wang, Yi Zhang, Yan He, Yang Liu, Qi Peng
Software Mentions: 12
Published: about 3 years ago
10.7554/eLife.55529
Smchd1 is a maternal effect gene required for genomic imprinting
Cited by: 22
Author(s): Iromi Wanigasuriya, Quentin Gouil, Sarah Kinkel, Andrés Tapia del Fierro, Tamara Beck, Ellise A Roper, Kelsey Breslin, Jessica M Stringer, Karla J. Hutt, Heather Lee, Andrew Keniry, Matthew E. Ritchie, Marnie E. Blewitt
Software Mentions: 12
Published: about 4 years ago
10.1186/s13059-018-1563-5
CRISPRO: identification of functional protein coding sequences based on genome editing dense mutagenesis
Cited by: 27
Author(s): Vivien A.C. Schoonenberg, Mitchel A Cole, Qiuming Yao, Claudio Macias-Treviño, Falak Sher, Patrick G. Schupp, Matthew C. Canver, Takahiro Maeda, Luca Pinello, Daniel E. Bauer
Software Mentions: 12
Published: about 6 years ago
10.3389/fgene.2019.01200
Dysregulation of MicroRNA Regulatory Network in Lower Extremities Arterial Disease
Cited by: 22
Author(s): Anna Bogucka‐Kocka, Daniel Zalewski, Karol P Ruszel, Andrzej Stępniewski, Dariusz Gałkowski, Jacek Bogucki, Łukasz Komsta, Przemysław Kołodziej, Tomasz Zubilewicz, Marcin Feldo, Janusz Kocki
Software Mentions: 12
Published: almost 5 years ago
10.7717/peerj.9850
lcc: an R package to estimate the concordance correlation, Pearson correlation and accuracy over time
Cited by: 5
Author(s): Thiago Pires Oliveira, Rafael de Andrade Moral, Sílvio Sandoval Zocchi, Clarice Garcia Borges Demétrio, John Hinde
Software Mentions: 12
Published: about 4 years ago
10.1371/journal.pone.0156293
Cryopreservation of Human Mucosal Leukocytes
Cited by: 14
Author(s): Sean M. Hughes, Zhiquan Shu, Claire Levy, April L. Ferre, Heather Hartig, Cifeng Fang, Gretchen M. Lentz, Michael Fialkow, Anna C. Kirby, Kristina M. Adams Waldorf, Ronald S. Veazey, Anja Germann, Hagen von Briesen, M. Juliana McElrath, Charlene S. Dezzutti, Elizabeth Sinclair, Chris A. R. Baker, Barbara L. Shacklett, Dayong Gao, Florian Hladik
Software Mentions: 12
Published: over 8 years ago
10.1186/s41073-017-0030-2
Concern noted: a descriptive study of editorial expressions of concern in PubMed and PubMed Central
Cited by: 15
Author(s): Melissa Vaught, Diana C. Jordan, Hilda Bastian
Software Mentions: 12
Published: over 7 years ago
10.3390/toxins12070433
Low Doses of Mycotoxin Mixtures below EU Regulatory Limits Can Negatively Affect the Performance of Broiler Chickens: A Longitudinal Study
Cited by: 26
Author(s): Oluwatobi Kolawole, A. Graham, Caroline Julie Donaldson, B. Owens, Wilfred A. Abia, Julie Meneely, M. Alcorn, Lisa Connolly, Chris Elliott
Software Mentions: 12
Published: over 4 years ago
10.15252/emmm.201809443
<scp>PDX</scp> models recapitulate the genetic and epigenetic landscape of pediatric T‐cell leukemia
Cited by: 35
Author(s): Paulina Richter-Pechańska, Joachim Kunz, Beat Bornhäuser, Caroline Von Knebel Doeberitz, Tobias Rausch, Büşra Erarslan-Uysal, Yassen Assenov, Viktoras Frismantas, Blerim Marovca, Sebastian M. Waszak, Martin Zimmermann, Julia Seemann, Margit Happich, Martin Stanulla, Martin Schrappe, Gunnar Cario, Gabriele Escherich, Kseniya Bakharevich, Renate Kirschner-Schwabe, Cornelia Eckert, Martina U. Muckenthaler, Jan O. Korbel, Jean‐Pierre Bourquin, Andreas E. Kulozik
Software Mentions: 12
Published: about 6 years ago
10.1038/s41598-021-89066-x
Lagged recovery of fish spatial distributions following a cold-water perturbation
Cited by: 3
Author(s): Masumi Robertson, Gao Jin, Paul M. Regular, M. J. Morgan, Fan Zhang
Software Mentions: 12
Published: over 3 years ago
10.3389/fmicb.2019.00697
Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must
Cited by: 28
Author(s): Kimmo Sirén, Sarah S.T. Mak, Chrats Melkonian, Christian Carøe, Jan H. Swiegers, Douwe Molenaar, Ulrich Fischer, M. Thomas P. Gilbert
Software Mentions: 12
Published: over 5 years ago
10.1371/journal.pone.0236305
Defining the sediment prokaryotic communities of the Indian River Lagoon, FL, USA, an Estuary of National Significance
Cited by: 7
Author(s): David J. Bradshaw, Nicholas J. Dickens, John H. Trefry, Peter J. McCarthy
Software Mentions: 12
Published: about 4 years ago
10.1038/s41598-021-86989-3
Stability and individual variability of social attachment in imprinting
Cited by: 15
Author(s): Bastien S. Lemaire, Daniele Rucco, Mathilde Josserand, Giorgio Vallortígara, Elisabetta Versace
Software Mentions: 12
Published: over 3 years ago
10.1186/s12974-021-02235-7
Sex differences and similarities in the neuroimmune response to central administration of poly I:C
Cited by: 14
Author(s): Caitlin K. Posillico, Rosa E. Garcia-Hernandez, Natalie C. Tronson
Software Mentions: 12
Published: about 3 years ago
10.1038/s41598-021-86286-z
Construction and validation of a metabolic risk model predicting prognosis of colon cancer
Cited by: 5
Author(s): Didi Zuo, Chao Li, Tao Liu, Meng Yue, Jiantao Zhang, Guang Ning
Software Mentions: 12
Published: over 3 years ago
10.1111/jcmm.16605
Leptin receptor is a key gene involved in the immunopathogenesis of thyroid‐associated ophthalmopathy
Cited by: 3
Author(s): Ziyi Chen, Zhe Chen, Jingya Wang, Meng Zhang, Xiaofei Wang, Deji Cuomu, Bingyin Shi, Yue Wang
Software Mentions: 12
Published: over 3 years ago
10.1371/journal.pone.0207491
Feature selection and prediction of treatment failure in tuberculosis
Cited by: 30
Author(s): Christopher Martin Sauer, David Sasson, Kenneth E. Paik, Ned McCague, Leo Anthony Celi, Iván Sánchez Fernández, Ben Illigens
Software Mentions: 12
Published: about 6 years ago
10.3390/diagnostics10020066
Identification of Key Biomarkers in Bladder Cancer: Evidence from a Bioinformatics Analysis
Cited by: 22
Author(s): Chuan Zhang, Mandy Berndt‐Paetz, Jochen Neuhaus
Software Mentions: 12
Published: almost 5 years ago
10.3389/fgene.2021.689159
Analyzing Roles of NUSAP1 From Clinical, Molecular Mechanism and Immune Perspectives in Hepatocellular Carcinoma
Cited by: 3
Author(s): Wenjie Zhu, Jian Xu, Zehao Chen, Jianxin Jiang
Software Mentions: 12
Published: over 3 years ago
10.3389/fgene.2020.00363
Novel Immune-Related Gene Signature for Risk Stratification and Prognosis of Survival in Lower-Grade Glioma
Cited by: 114
Author(s): Mingwei Zhang, Xuezhen Wang, Xiaoping Chen, Qiuyu Zhang, Jinsheng Hong
Software Mentions: 12
Published: over 4 years ago
10.3390/biom11020338
Fungal X-Intrinsic Protein Aquaporin from Trichoderma atroviride: Structural and Functional Considerations
Cited by: 1
Author(s): Maroua Ben Amira, Mohamed Faize, Magnus Karlsson, Mukesh Dubey, Magdalena Frąc, Jacek Panek, Boris Fumanal, Aurélie Gousset-Dupont, Jean-Louis Julien, Hatem Chaar, Daniel Auguin, Robin Mom, Philippe Label, Jean-Stéphane Venisse
Software Mentions: 12
Published: over 3 years ago
10.7717/peerj.11376
ProkEvo: an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses
Cited by: 4
Author(s): Natasha Pavlovikj, João Carlos Gomes-Neto, Jitender S. Deogun, Andrew K. Benson
Software Mentions: 12
Published: over 3 years ago
10.3389/fgene.2018.00278
RNA Sequencing (RNA-Seq) Reveals Extremely Low Levels of Reticulocyte-Derived Globin Gene Transcripts in Peripheral Blood From Horses (Equus caballus) and Cattle (Bos taurus)
Cited by: 11
Author(s): Carolina N. Correia, Kirsten E. McLoughlin, Nicolas C. Nalpas, David A. Magee, John A. Browne, Kévin Rue-Albrecht, Stephen V. Gordon, David E. MacHugh
Software Mentions: 12
Published: over 6 years ago
10.1371/journal.pone.0239197
Effects of germline and somatic events in candidate BRCA-like genes on breast-tumor signatures
Cited by: 13
Author(s): Weston R. Bodily, Brian H. Shirts, Tom Walsh, Süleyman Gülsüner, Mary‐Claire King, Alyssa Parker, Moom R. Roosan, Stephen R. Piccolo
Software Mentions: 12
Published: about 4 years ago
10.3389/fgene.2021.667610
The Construction and Analysis of ceRNA Network and Immune Infiltration in Kidney Renal Clear Cell Carcinoma
Cited by: 10
Author(s): Lugang Deng, Peixi Wang, Zhi Qu, Nan Liu
Software Mentions: 12
Published: about 3 years ago
10.1128/mSystems.00750-21
Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies
Cited by: 11
Author(s): Christoph Ammer‐Herrmenau, Nina Pfisterer, T. van den Berg, Ivana Gavrilova, Ahmad Amanzada, Shiv K. Singh, Alaa Mohamed, Rohia Alili, Eugeni Belda, Karine Clément, Ahmed Abd El Wahed, ElSagad Eltayeb Gady, Martin Haubrock, Tim Beißbarth, Volker Ellenrieder, Albrecht Neeße
Software Mentions: 12
Published: about 3 years ago
10.3390/cells10051066
Integrated microRNA and mRNA Expression Profiling Identifies Novel Targets and Networks Associated with Ebstein’s Anomaly
Cited by: 5
Author(s): Masood Abu‐Halima, Viktoria Wagner, Lea Simone Becker, Basim Ayesh, Mohammed Abd El-Rahman, Ulrike Fischer, Eckart Meese, Hashim Abdul‐Khaliq
Software Mentions: 12
Published: over 3 years ago
10.3389/fonc.2021.625207
MYCN Drives a Tumor Immunosuppressive Environment Which Impacts Survival in Neuroblastoma
Cited by: 18
Author(s): Salvatore Raieli, Daniele Di Renzo, Silvia Lampis, Camilla Amadesi, Luca Montemurro, Andrea Pession, Patrizia Hrelia, Matthias Fischer, Roberto Tonelli
Software Mentions: 12
Published: over 3 years ago
10.1155/2021/6653247
A Risk Signature with Nine Stemness Index-Associated Genes for Predicting Survival of Patients with Uterine Corpus Endometrial Carcinoma
Cited by: 9
Author(s): Haoya Xu, Ruoyao Zou, Jiyu Liu, Li Zhu
Software Mentions: 12
Published: over 3 years ago
10.7717/peerj.9847
Prognostic implications of metabolism-associated gene signatures in colorectal cancer
Cited by: 21
Author(s): Yifei Miao, Qiutian Li, Jiangtao Wang, Wuxia Quan, Chen Li, Yuan Yang, Denghai Mi
Software Mentions: 12
Published: about 4 years ago
10.1371/journal.pone.0251323
The role of multiple metabolic genes in predicting the overall survival of colorectal cancer: A study based on TCGA and GEO databases
Cited by: 2
Author(s): Weijun Shi, Xincan Li, Shuai Xu, Hexin Wen, Tianwen Chen, Huazhang Wu, Mulin Liu
Software Mentions: 12
Published: over 3 years ago
10.3389/fnbeh.2021.675994
Resurgence of an Inborn Attraction for Animate Objects via Thyroid Hormone T3
Cited by: 8
Author(s): Elena Lorenzi, Bastien S. Lemaire, Elisabetta Versace, Toshiya Matsushima, Giorgio Vallortígara
Software Mentions: 12
Published: over 3 years ago
10.7717/peerj.11534
<i>AlleleShift:</i> an R package to predict and visualize population-level changes in allele frequencies in response to climate change
Cited by: 5
Author(s): Roeland Kindt
Software Mentions: 12
Published: over 3 years ago
10.3389/fnbeh.2018.00187
Exhaustive Multi-Parametric Assessment of the Behavioral Array of Daily Activities of Mice Using Cluster and Factor Analysis
Cited by: 7
Author(s): Kenzo Yamamoto, Katsiaryna V. Gris, Jesús E. Sotelo Fonseca, Marjan Gharagozloo, Shaimaa Mahmoud, Camille Simard, Daphné Houle-Martel, Theodore Cloutier, Pavel Gris, Denis Gris
Software Mentions: 12
Published: about 6 years ago
10.1111/1462-2920.14621
Microbial iron metabolism as revealed by gene expression profiles in contrasted Southern Ocean regimes
Cited by: 22
Author(s): Pavla Debeljak, Ève Toulza, Sara Beier, Stéphane Blain, Ingrid Obernosterer
Software Mentions: 12
Published: over 5 years ago
10.7717/peerj.5661
High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across Amazonia
Cited by: 17
Author(s): Camila Duarte Ritter, Alexander Zizka, Fabian Roger, Hanna Tuomisto, Christopher J. Barnes, R. Henrik Nilsson, Alexandre Antonelli
Software Mentions: 12
Published: about 6 years ago
10.1007/s00429-018-1628-y
Diffusion MRI-based cortical connectome reconstruction: dependency on tractography procedures and neuroanatomical characteristics
Cited by: 61
Author(s): Michel R.T. Sinke, Willem M. Otte, Daan Christiaens, Oliver Schmitt, Alexander Leemans, Annette van der Toorn, R. Angela Sarabdjitsingh, Marian Joëls, Rick M. Dijkhuizen
Software Mentions: 12
Published: almost 7 years ago
10.1093/conphys/coaa047
Changes in physiology and microbial diversity in larval ornate chorus frogs are associated with habitat quality
Cited by: 9
Author(s): Cory B. Goff, Susan C. Walls, David Rodríguez, Caitlin R. Gabor
Software Mentions: 12
Published: almost 5 years ago
10.1099/mgen.0.000499
A comprehensive and high-quality collection of Escherichia coli genomes and their genes
Cited by: 32
Author(s): Gal Horesh, Grace A. Blackwell, Gerry Tonkin‐Hill, Jukka Corander, Eva Heinz, Nicholas R. Thomson
Software Mentions: 12
Published: almost 4 years ago
10.1371/journal.pcbi.1008991
Memes: A motif analysis environment in R using tools from the MEME Suite
Cited by: 22
Author(s): Spencer L. Nystrom, Daniel J. McKay
Software Mentions: 12
Published: about 3 years ago
10.1098/rspb.2021.0394
Testing hypotheses of marsupial brain size variation using phylogenetic multiple imputations and a Bayesian comparative framework
Cited by: 7
Author(s): Orlin S. Todorov, Simone P. Blomberg, Anjali Goswami, Karen E. Sears, Patrik Drhlík, James Peters, Vera Weisbecker
Software Mentions: 12
Published: over 3 years ago
10.1186/s40168-020-0793-4
Separating the signal from the noise in metagenomic cell-free DNA sequencing
Cited by: 26
Author(s): Philip Burnham, Nardhy Gómez-López, Michael Heyang, Alexandre Pellan Cheng, Joan Sesing Lenz, Darshana Dadhania, John Richard Lee, Manikkam Suthanthiran, Roberto Romero, Iwijn De Vlaminck
Software Mentions: 12
Published: almost 5 years ago
10.1093/gigascience/giz088
PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping
Cited by: 5
Author(s): Luis Francisco Hernández Sánchez, Bram Burger, Carlos Horro, Antonio Fabregat, Stefan Johansson, Pål Rasmus Njølstad, Harald Barsnes, Henning Hermjakob, Marc Vaudel
Software Mentions: 12
Published: over 5 years ago
10.1371/journal.pcbi.1005404
Metacoder: An R package for visualization and manipulation of community taxonomic diversity data
Cited by: 437
Author(s): Zachary Foster, Thomas J. Sharpton, Niklaus J. Grünwald
Software Mentions: 12
Published: over 7 years ago
10.1371/journal.pone.0231500
Propensity score adjustment using machine learning classification algorithms to control selection bias in online surveys
Cited by: 23
Author(s): Ramón Ferri‐García, María del Mar Rueda
Software Mentions: 12
Published: over 4 years ago
10.1186/s13567-021-00981-3
Immunogenicity and protective efficacy of a Streptococcus suis vaccine composed of six conserved immunogens
Cited by: 8
Author(s): Christine Weiße, Denise Dittmar, Beata Jakóbczak, Volker Florian, Nicole Schütze, Gottfried Alber, Kristin Klose, Stephan Michalik, Peter Valentin‐Weigand, Uwe Völker, Christoph Georg Baums
Software Mentions: 12
Published: about 3 years ago
10.3389/fgene.2019.01079
HiCeekR: A Novel Shiny App for Hi-C Data Analysis
Cited by: 13
Author(s): Lucio Di Filippo, Dario Righelli, Miriam Gagliardi, Maria R. Matarazzo, Claudia Angelini
Software Mentions: 12
Published: about 5 years ago
10.1111/test.12258
Some teaching resources using R with illustrative examples exploring COVID ‐19 data
Cited by: 0
Author(s): Arthur Berg, Nour Hawila
Software Mentions: 12
Published: over 3 years ago
10.1186/s13073-021-00869-z
Microbiota-associated risk factors for asymptomatic gut colonisation with multi-drug-resistant organisms in a Dutch nursing home
Cited by: 13
Author(s): Quinten R Ducarmon, Elisabeth M. Terveer, Sam Nooij, Michelle N Bloem, Karuna E W Vendrik, Monique A. A. Caljouw, Ingrid M J G Sanders, S.M. van Dorp, M.C. Wong, Romy D. Zwittink, Ed J. Kuijper
Software Mentions: 12
Published: over 3 years ago
10.1371/journal.pone.0238835
Analyzing the fine structure of distributions
Cited by: 35
Author(s): Michael C. Thrun, Tino Gehlert, Alfred Ultsch
Software Mentions: 12
Published: about 4 years ago
10.1186/s12957-021-02175-9
A prognostic model for hepatocellular carcinoma based on apoptosis-related genes
Cited by: 15
Author(s): Renjie Liu, Guifu Wang, Chi Zhang, Dou‐Sheng Bai
Software Mentions: 12
Published: over 3 years ago
10.3389/fimmu.2020.01659
Conventional and Computational Flow Cytometry Analyses Reveal Sustained Human Intrathymic T Cell Development From Birth Until Puberty
Cited by: 2
Author(s): Marieke Lavaert, Brecht Valcke, Bart Vandekerckhove, Georges Leclercq, Kai Ling Liang, Tom Taghon
Software Mentions: 12
Published: over 4 years ago
10.18632/aging.202317
Identification and validation of an immune-related gene signature predictive of overall survival in colon cancer
Cited by: 33
Author(s): Xuening Zhang, Hao Zhao, Xiaoguang Shi, Xiaocan Jia, Yongli Yang
Software Mentions: 12
Published: almost 4 years ago
10.1371/journal.pone.0236135
Fungi, bacteria and oomycota opportunistically isolated from the seagrass, Zostera marina
Cited by: 25
Author(s): Cassandra L. Ettinger, Jonathan A. Eisen
Software Mentions: 12
Published: over 4 years ago
10.1186/s12885-021-07788-7
Comprehensive analysis of genomic mutation signature and tumor mutation burden for prognosis of intrahepatic cholangiocarcinoma
Cited by: 14
Author(s): Rui Zhang, Qi Li, Jiao Fu, Z C Jin, Jingbo Su, Jian Zhang, Chen Chen, Zhimin Geng, Dong Zhang
Software Mentions: 12
Published: almost 4 years ago
10.1038/s41421-021-00321-x
Dynamics of TCR repertoire and T cell function in COVID-19 convalescent individuals
Cited by: 23
Author(s): Lingjie Luo, Wenhua Liang, Jianfeng Pang, Gang Xu, Yingying Chen, Xinrong Guo, Xin Wang, Yi Zhao, Yang-dian Lai, Yang Liu, Bin Li, Bing Su, Shuye Zhang, Michal Baniyash, Lei Shen, Lei Chen, Yun Ling, Ying Wang, Qiming Liang, Hongzhou Lu, Zheng Zhang, Feng Wang
Software Mentions: 12
Published: about 3 years ago
10.7554/eLife.34409
General decapping activators target different subsets of inefficiently translated mRNAs
Cited by: 40
Author(s): Feng He, Alper Çelik, Chan Wu, Allan Jacobson
Software Mentions: 12
Published: almost 6 years ago
10.4269/ajtmh.20-0757
A Computational Modeling Study of COVID-19 in Bangladesh
Cited by: 7
Author(s): Irtesam Mahmud Khan, Ubydul Haque, Samiha Kaisar, Md. Saidur Rahman
Software Mentions: 12
Published: almost 4 years ago
10.1002/cam4.4126
Hypoxia‐related lncRNAs to build prognostic classifier and reveal the immune characteristics of EGFR wild type and low expression of PD‐L1 squamous and adenocarcinoma NSCLC
Cited by: 4
Author(s): Fang Zhao, Min Wang, Jie Zhu
Software Mentions: 12
Published: over 3 years ago
10.3389/fnut.2021.642612
The Association of Meat Intake With All-Cause Mortality and Acute Myocardial Infarction Is Age-Dependent in Patients With Stable Angina Pectoris
Cited by: 2
Author(s): Åslaug Oddsdatter Matre, Anthea Van Parys, Trond E. Olsen, Teresa Haugsgjerd, Carl Michael Baravelli, Ottar Nygård, Jutta Dierkes, Vegard Lysne
Software Mentions: 12
Published: over 3 years ago
10.18632/aging.202871
A novel focal adhesion related gene signature for prognostic prediction in hepatocellular carcinoma
Cited by: 4
Author(s): Zhuo Lin, Dan Miao, Xu Qian, Xiaodong Wang, Fang Yu
Software Mentions: 12
Published: over 3 years ago
10.26508/lsa.202000770
In vivo CRISPR/Cas9 knockout screen: TCEAL1 silencing enhances docetaxel efficacy in prostate cancer
Cited by: 12
Author(s): Linda Rushworth, Victoria Harle, Peter Repiščák, William Clark, Robin Shaw, Holly Hall, Martin Bushell, Hing Y. Leung, Rachana Patel
Software Mentions: 12
Published: about 4 years ago
10.7554/eLife.58993
Expansion of the circadian transcriptome in Brassica rapa and genome-wide diversification of paralog expression patterns
Cited by: 23
Author(s): Kathleen Greenham, Ryan C. Sartor, Stevan Zorich, Ping Lou, Todd C. Mockler, C. Robertson McClung
Software Mentions: 12
Published: about 4 years ago
10.3390/ijerph18094859
A Network Approach for the Study of Drug Prescriptions: Analysis of Administrative Records from a Local Health Unit (ASL TO4, Regione Piemonte, Italy)
Cited by: 2
Author(s): Gianluca Miglio, Lara Denise Basso, Lucrezia Greta Armando, Sara Traina, Elisa Benetti, Abdoulaye Diarassouba, Raffaella Baroetto Parisi, Mariangela Esiliato, Cristina Rolando, Elisa Remani, Clara Cena
Software Mentions: 12
Published: over 3 years ago
10.3390/insects12020180
Unexpected Effects of Local Management and Landscape Composition on Predatory Mites and Their Food Resources in Vineyards
Cited by: 16
Author(s): Stefan Möth, Andreas Walzer, Markus Redl, Božana Petrović, Christoph Hoffmann, Silvia Winter
Software Mentions: 12
Published: almost 4 years ago
10.1007/s00216-020-03093-7
Repeated double cross-validation applied to the PCA-LDA classification of SERS spectra: a case study with serum samples from hepatocellular carcinoma patients
Cited by: 23
Author(s): Elisa Gurian, Alessia Di Silvestre, Elisa Mitri, Devis Pascut, Claudio Tiribelli, Mauro Giuffrè, Lory Saveria Crocè, Valter Sergo, Alois Bonifacio
Software Mentions: 12
Published: almost 4 years ago
10.3389/fmicb.2017.01553
Effect of Pre-weaning Diet on the Ruminal Archaeal, Bacterial, and Fungal Communities of Dairy Calves
Cited by: 58
Author(s): Juliana Dias, Marcos Inácio Marcondes, Melline Fontes Noronha, Rafael Tassinari Resende, F. S. Machado, Hilário Cuquetto Mantovani, Kimberly A. Dill‐McFarland, Garret Suen
Software Mentions: 12
Published: over 7 years ago
10.1186/s13071-017-2054-3
GIS-supported epidemiological analysis on canine Angiostrongylus vasorum and Crenosoma vulpis infections in Germany
Cited by: 41
Author(s): Pavlo Maksimov, Carlos Hermosilla, Anja Taubert, Christoph Staubach, Carola Sauter‐Louis, Franz Josef Conraths, Majda Globokar Vrhovec, Nikola Pantchev
Software Mentions: 12
Published: over 7 years ago
10.1186/s13148-019-0729-7
Peripheral blood DNA methylation differences in twin pairs discordant for Alzheimer’s disease
Cited by: 26
Author(s): Mikko Konki, Maia Malonzo, Ida Karlsson, Noora Lindgrén, Bishwa Ghimire, Johannes Smolander, Noora M. Scheinin, Miina Ollikainen, Asta Laiho, Laura L. Elo, Tapio Lönnberg, Matias Röyttä, Nancy L. Pedersen, Jaakko Kaprio, Harri Lähdesmäki, Juha O. Rinne, Riikka Lund
Software Mentions: 12
Published: about 5 years ago
10.1155/2021/4743971
Exploration of the Immune-Related Signatures and Immune Infiltration Analysis in Melanoma
Cited by: 0
Author(s): Ai-lan Li, Yong‐Mei Zhu, Lai-qiang Gao, Shuyue Wei, Mingtao Wang, Qiang Ma, Yuanna Zheng, Jianhua Li, Qingfeng Wang
Software Mentions: 12
Published: almost 4 years ago
10.3389/fmicb.2020.01116
Crop Management Impacts the Soybean (Glycine max) Microbiome
Cited by: 41
Author(s): Reid Longley, Zachary A Noel, Gian Maria Niccolò Benucci, Martin I. Chilvers, Frances Trail, Gregory Bonito
Software Mentions: 12
Published: over 4 years ago
10.1186/s12920-015-0121-1
Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities
Cited by: 52
Author(s): Eduardo Castro-Nallar, Ying Shen, Robert J. Freishtat, Marcos Pérez‐Losada, Solaiappan Manimaran, Gang Lv, W. Evan Johnson, Keith A. Crandall
Software Mentions: 12
Published: over 9 years ago
10.1186/s12920-017-0303-0
Classifying cancer genome aberrations by their mutually exclusive effects on transcription
Cited by: 8
Author(s): Jonathan Dayton, Stephen R. Piccolo
Software Mentions: 12
Published: almost 7 years ago
10.1371/journal.pone.0243295
Polish is quantitatively different on quartzite flakes used on different worked materials
Cited by: 12
Author(s): Antonella Pedergnana, Ivan Calandra, Adrian Evans, Konstantin Bob, Andreas Hildebrandt, Andreu Ollé
Software Mentions: 12
Published: almost 4 years ago
10.1002/cam4.4092
Gene signatures predict biochemical recurrence‐free survival in primary prostate cancer patients after radical therapy
Cited by: 6
Author(s): Qiang Su, Zhenyu Liu, Chi Chen, Han Gao, Yongbei Zhu, Liusu Wang, Meiqing Pan, Jiangang Liu, Xin Yang, Jie Tian
Software Mentions: 12
Published: about 3 years ago
10.3390/ijerph17124268
Association of Nap Duration after Lunch with Prevalence of Metabolic Syndrome in a Chinese Government Employee Population
Cited by: 13
Author(s): Jing He, Feiyun Ouyang, Dan Qiu, Yanying Duan, Dan Luo, Shuiyuan Xiao
Software Mentions: 12
Published: over 4 years ago
10.1186/s12885-021-08442-y
Genetic expression and mutational profile analysis in different pathologic stages of hepatocellular carcinoma patients
Cited by: 9
Author(s): Xingjie Gao, Chunyan Zhao, Nan Zhang, Xiaoteng Cui, Yuanyuan Ren, Chao Su, Shaoyuan Wu, Zhi Yao, Jie Yang
Software Mentions: 12
Published: over 3 years ago
10.1038/s41598-020-73812-8
Synbiotic feed supplementation significantly improves lipid utilization and shows discrete effects on disease resistance in rainbow trout (Oncorhynchus mykiss)
Cited by: 10
Author(s): Kasper Rømer Villumsen, Maki Ohtani, Torunn Forberg, Elisabeth Aasum, John Tinsley, Anders Miki Bojesen
Software Mentions: 12
Published: about 4 years ago
10.3389/fimmu.2020.00444
JunB Controls Intestinal Effector Programs in Regulatory T Cells
Cited by: 8
Author(s): Joshua D. Wheaton, Maria Ciofani
Software Mentions: 12
Published: over 4 years ago
10.1186/s12859-021-04178-5
WEScover: selection between clinical whole exome sequencing and gene panel testing
Cited by: 3
Author(s): In-Hee Lee, Yufei Lin, William Jefferson Alvarez, Carles Hernández-Ferrer, Kenneth D. Mandl, Sek Won Kong
Software Mentions: 12
Published: over 3 years ago
10.1186/s12935-021-01900-4
Role of tumor mutation burden-related signatures in the prognosis and immune microenvironment of pancreatic ductal adenocarcinoma
Cited by: 16
Author(s): Rong Tang, Xiaomeng Liu, Wei Wang, Jie Hua, Jin Xu, Chen Liang, Qingcai Meng, Jiang Liu, Bo Zhang, Yu Lei, Si Shi
Software Mentions: 12
Published: over 3 years ago
10.1371/journal.pone.0244005
DDRP: Real-time phenology and climatic suitability modeling of invasive insects
Cited by: 13
Author(s): Brittany S. Barker, Leonard B. Coop, Tyson Wepprich, Fritzi S. Grevstad, Gericke Cook
Software Mentions: 12
Published: almost 4 years ago
10.1371/journal.pone.0195065
Dengue forecasting in São Paulo city with generalized additive models, artificial neural networks and seasonal autoregressive integrated moving average models
Cited by: 48
Author(s): Oswaldo Santos Baquero, Lidia Maria Reis Santana, Francisco Chiaravalloti Neto
Software Mentions: 12
Published: over 6 years ago
10.3389/fphar.2021.726529
CD3D, GZMK, and KLRB1 Are Potential Markers for Early Diagnosis of Rheumatoid Arthritis, Especially in Anti-Citrullinated Protein Antibody-Negative Patients
Cited by: 8
Author(s): Junqin Lu, Yihui Bi, Yapeng Zhu, Hanyu Shi, Wenxiu Duan, Jian Zhou
Software Mentions: 12
Published: about 3 years ago
10.1371/journal.pone.0219698
Analysis of gene expression in rheumatoid arthritis and related conditions offers insights into sex-bias, gene biotypes and co-expression patterns
Cited by: 11
Author(s): Alexander Platzer, Thomas Nußbaumer, Thomas Karonitsch, Josef S. Smolen, Daniel Aletaha
Software Mentions: 12
Published: over 5 years ago
10.1371/journal.pone.0229330
StructuRly: A novel shiny app to produce comprehensive, detailed and interactive plots for population genetic analysis
Cited by: 22
Author(s): Nicola G. Criscuolo, Claudia Angelini
Software Mentions: 12
Published: almost 5 years ago
10.1002/cam4.3907
MRPL15 is a novel prognostic biomarker and therapeutic target for epithelial ovarian cancer
Cited by: 21
Author(s): Haoya Xu, Ruoyao Zou, Feifei Li, Jiyu Liu, Nannan Luan, Shengke Wang, Liping Zhu
Software Mentions: 12
Published: over 3 years ago
10.1371/journal.ppat.1005548
Determinants of Arbovirus Vertical Transmission in Mosquitoes
Cited by: 90
Author(s): Sébastian Lequime, Paul Rácz, Louis Lambrechts
Software Mentions: 12
Published: over 8 years ago
10.3390/microorganisms9071526
Exploring the Individual Bacterial Microbiota of Questing Ixodes ricinus Nymphs
Cited by: 2
Author(s): Aurélien Alafaci, Alexandre Crépin, Sabine Beaubert, Jean‐Marc Berjeaud, Vincent Delafont, Julien Verdon
Software Mentions: 12
Published: over 3 years ago
10.1186/s12919-016-0015-z
Analysis of gene expression to predict dynamics of future hypertension incidence in type 2 diabetic patients
Cited by: 8
Author(s): Piotr Radkowski, Gracjan Wątor, Jan Skupień, Anna Bogdali, Paweł Wołkow
Software Mentions: 12
Published: about 8 years ago
10.1186/s12889-021-11065-4
Who or what is to blame? Examining sociodemographic relationships to beliefs about causes, control, and responsibility for cancer and chronic disease prevention in Alberta, Canada
Cited by: 5
Author(s): Kimberley D. Curtin, Mathew Thomson, Candace I. J. Nykiforuk
Software Mentions: 12
Published: over 3 years ago
10.3390/jcm10184071
Diagnostic and Prognostic Potential of MiR-379/656 MicroRNA Cluster in Molecular Subtypes of Breast Cancer
Cited by: 2
Author(s): Megha Lal, Asgar Hussain Ansari, Anurag Agrawal, Arijit Mukhopadhyay
Software Mentions: 12
Published: about 3 years ago
10.7554/eLife.52465
Navigating the garden of forking paths for data exclusions in fear conditioning research
Cited by: 87
Author(s): Tina B. Lonsdorf, Maren Klingelhöfer-Jens, Marta Andreatta, Tom Beckers, Anastasia Chalkia, Anna Gerlicher, Valerie L. Jentsch, Shira Meir Drexler, Gaëtan Mertens, Jan Richter, Rachel Sjouwerman, Julia Wendt, Christian J. Merz
Software Mentions: 12
Published: almost 5 years ago
10.7554/eLife.38579
FoxA1 and FoxA2 drive gastric differentiation and suppress squamous identity in NKX2-1-negative lung cancer
Cited by: 52
Author(s): Soledad A. Camolotto, S. R. Pattabiraman, Timothy Mosbruger, Alex Jones, Veronika K Belova, Grace Orstad, Mitchell Streiff, Lydia Salmond, Chris Stubben, Klaus H. Kaestner, Eric L. Snyder
Software Mentions: 12
Published: almost 6 years ago
10.1186/s12915-016-0258-1
The native microbiome of the nematode Caenorhabditis elegans: gateway to a new host-microbiome model
Cited by: 283
Author(s): Philipp Dirksen, Sarah Arnaud Marsh, Ines Braker, Nele Heitland, Sophia Wagner, Rania Nakad, Sebastian Mäder, Carola Petersen, Vienna Kowallik, Philip Rosenstiel, Marie‐Anne Félix, Hinrich Schulenburg
Software Mentions: 12
Published: over 8 years ago
10.3390/insects11080535
Impacts of Dietary Nutritional Composition on Larval Development and Adult Body Composition in the Yellow Fever Mosquito (Aedes aegypti)
Cited by: 15
Author(s): Tess van Schoor, Erin Taylor Kelly, Nicole Tam, Geoffrey M. Attardo
Software Mentions: 12
Published: over 4 years ago
10.1002/ece3.7972
Elevated temperature increases reproductive investment in less preferred mates in the invasive European corn borer moth
Cited by: 4
Author(s): Arielle N. Enos, Genevieve M. Kozak
Software Mentions: 12
Published: over 3 years ago
10.7717/peerj.10255
Comprehensive genomic analysis of microenvironment phenotypes in ovarian cancer
Cited by: 4
Author(s): Jingshu Wang, Tingting Zhang, Lina Yang, Gong Yang
Software Mentions: 12
Published: almost 4 years ago