Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-018-1563-5

https://doi.org/10.1186/s13059-018-1563-5

CRISPRO: identification of functional protein coding sequences based on genome editing dense mutagenesis

Cited by: 27
Author(s): Vivien A.C. Schoonenberg, Mitchel A Cole, Qiuming Yao, Claudio Macias-Treviño, Falak Sher, Patrick G. Schupp, Matthew C. Canver, Takahiro Maeda, Luca Pinello, Daniel E. Bauer
Published: about 6 years ago

Software Mentions 12

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gridExtra
Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298
pypi: biopython
Freely available tools for computational molecular biology.
Papers that mentioned: 114
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: pandas
Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640
pypi: PyMOL

Papers that mentioned: 8,266
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071
pypi: seaborn
Statistical data visualization
Papers that mentioned: 283