Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.66738

https://doi.org/10.7554/eLife.66738

Cited by: 15
Author(s): Lindsay A. Hohsfield, Allison R. Najafi, Yasamine Ghorbanian, Neelakshi Soni, Joshua Crapser, Dario X. Figueroa Velez, Shan Jiang, Sarah E Royer, Sung Jin Kim, Caden M Henningfield, Aileen J. Anderson, Sunil Gandhi, A Mortazavi, Matthew A. Inlay, Kim N. Green
Published: over 2 years ago

Software Mentions 12

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
Papers that mentioned: 123
bioconductor: maSigPro
Significant Gene Expression Profile Differences in Time Course Gene Expression Data
Papers that mentioned: 119
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
cran: enrichR
Provides an R Interface to 'Enrichr'
Papers that mentioned: 60
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: GOplot
Visualization of Functional Analysis Data
Papers that mentioned: 269
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: plot3D
Plotting Multi-Dimensional Data
Papers that mentioned: 47
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479