Papers: 10.1084/jem.20160553

https://doi.org/10.1084/jem.20160553

Egr2 and 3 control adaptive immune responses by temporally uncoupling expansion from T cell differentiation

Cited by: 46
Author(s): Tizong Miao, Alistair L. J. Symonds, Randeep Singh, Janine D. Symonds, Ane Ogbe, Becky Omodho, Bo Zhu, Suling Li, Ping Wang
Published: over 9 years ago

Software Mentions 12

bioconductor: BiocParallel
Bioconductor facilities for parallel evaluation
Papers that mentioned: 30
Very Likely Science (100)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
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bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
Very Likely Science (90)
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
Very Likely Science (90)
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
Very Likely Science (90)
bioconductor: vsn
Variance stabilization and calibration for microarray data
Papers that mentioned: 91
Very Likely Science (100)
cran: cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Papers that mentioned: 416
Very Likely Science (85)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: gridExtra
Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298
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cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
Very Likely Science (75)
cran: VennDiagram
Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626
Very Likely Science (83)
pypi: cluster
Simple clustering library for python.
Papers that mentioned: 416
Very Likely Science (80)