Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1084/jem.20160553

https://doi.org/10.1084/jem.20160553

Cited by: 46
Author(s): Tizong Miao, Alistair L. J. Symonds, Randeep Singh, Janine D. Symonds, Ane Ogbe, Becky Omodho, Bo Zhu, Suling Li, Ping Wang
Published: about 7 years ago

Software Mentions 12

bioconductor: BiocParallel
Bioconductor facilities for parallel evaluation
Papers that mentioned: 30
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
bioconductor: vsn
Variance stabilization and calibration for microarray data
Papers that mentioned: 91
cran: cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Papers that mentioned: 416
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gridExtra
Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: VennDiagram
Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626
pypi: cluster

Papers that mentioned: 416