Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
cran: DIRECT
Bayesian Clustering of Multivariate Data Under the Dirichlet-Process PriorPapers that mentioned: 81
pypi: Philips
A bunch of utility functions created during classroom practicePapers that mentioned: 81
bioconductor: ropls
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics dataPapers that mentioned: 81
cran: Matching
Multivariate and Propensity Score Matching with Balance OptimizationPapers that mentioned: 81
cran: BI
Blinding Assessment Indexes for Randomized, Controlled, Clinical TrialsPapers that mentioned: 81
cran: MatrixEQTL
Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix OperationsPapers that mentioned: 81
pypi: awk
A library to provide advanced awk-like functionalities for file manipulation in Python.Papers that mentioned: 80
pypi: align
Analyzing Linguistic Interaction with Generalizable techNiques. Read the latest ALIGN tutorials.Papers that mentioned: 80
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in RPapers that mentioned: 79
cran: mrMLM
Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for GWASPapers that mentioned: 79
cran: tableone
Create 'Table 1' to Describe Baseline Characteristics with or without Propensity Score WeightsPapers that mentioned: 78
pypi: co
Python library for making and tracking mutated copies of DNA componentsPapers that mentioned: 78
pypi: snippy
Snippy is a software development and maintenance notes manager.Papers that mentioned: 77
pypi: PLM
Bidirectional ELM neural network implementation for regression problemPapers that mentioned: 77
bioconductor: AIMS
AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular SubtypePapers that mentioned: 77
bioconductor: Heatplus
Heatmaps with row and/or column covariates and colored clustersPapers that mentioned: 77
pypi: circular
Visualize the latest circular from the Somerville Market BasketPapers that mentioned: 77
bioconductor: decontam
Identify Contaminants in Marker-gene and Metagenomics Sequencing DataPapers that mentioned: 76
bioconductor: KEGGREST
Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)Papers that mentioned: 75
bioconductor: PSICQUIC
Papers that mentioned: 75cran: Information
Data Exploration with Information Theory (Weight-of-Evidence and Information Value)Papers that mentioned: 74
pypi: SimpleITK
SimpleITK is a simplified interface to the Insight Toolkit (ITK) for image registration and segmentationPapers that mentioned: 74
cran: sjstats
Collection of Convenient Functions for Common Statistical ComputationsPapers that mentioned: 74
cran: AUC
Threshold Independent Performance Measures for Probabilistic ClassifiersPapers that mentioned: 74
bioconductor: AnnotationDbi
Manipulation of SQLite-based annotations in BioconductorPapers that mentioned: 73
pypi: PARS
Project which enable automatic downloading data from pfam and rfam databasesPapers that mentioned: 73
bioconductor: CODEX
A Normalization and Copy Number Variation Detection Method for Whole Exome SequencingPapers that mentioned: 72
pypi: Acquisition
Acquisition is a mechanism that allows objects to obtain attributes from the containment hierarchy they're in.Papers that mentioned: 72
bioconductor: siggenes
Multiple Testing using SAM and Efron's Empirical Bayes ApproachesPapers that mentioned: 72
bioconductor: ASSET
An R package for subset-based association analysis of heterogeneous traits and subtypesPapers that mentioned: 72
cran: ICC
Facilitating Estimation of the Intraclass Correlation CoefficientPapers that mentioned: 72