Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Operon

https://packages.ecosyste.ms/registries/pypi.org/packages/Operon

Dataflow pipeline development framework, powered by Parsl
4 versions
Latest release: about 6 years ago
19 downloads last month

Papers Mentioning Operon 78

10.3389/fpls.2019.01581
Expression QTL (eQTLs) Analyses Reveal Candidate Genes Associated With Fruit Flesh Softening Rate in Peach [Prunus persica (L.) Batsch]
Cited by: 24
Author(s): Tomás Carrasco-Valenzuela, Claudia Muñoz-Espinoza, Aníbal Riveros, Romina Pedreschi, Pere Arús, Reinaldo Campos-Vargas, Claudio Meneses
Software Mentions: 7
Published: almost 5 years ago
10.1186/1471-2164-12-326
Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis
Cited by: 19
Author(s): Franc Llorens, Manuela Hummel, Xavier Pastor, Anna Ferrer, Raquel Pluvinet, Ana Vivancos, Ester Castillo, Susana Iraola, A.M. Mosquera, E. A. Gonzalez, Juan José Lozano, Matthew Ingham, Juliane C. Dohm, María Noguera, Robert Kofler, José Antonio del Rı́o, Mònica Bayés, Heinz Himmelbauer, Lauro Sumoy
Software Mentions: 5
Published: over 13 years ago
10.1186/1471-2164-10-63
Comparative analysis of methods for gene transcription profiling data derived from different microarray technologies in rat and mouse models of diabetes
Cited by: 16
Author(s): Steven P. Wilder, Pamela J. Kaisaki, Karène Argoud, Anita Salhan, Jiannis Ragoussis, Marie-Thérèse Bihoreau, Dominique Guyader
Software Mentions: 5
Published: almost 16 years ago
10.1186/s12870-016-0789-1
Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight
Cited by: 17
Author(s): Claudia Muñoz-Espinoza, Alex Di Génova, Juan Correa, Romina Silva, Alejandro Maass, Mauricio González-Agüero, Ariel Orellana, Patricio Hinrichsen
Software Mentions: 4
Published: over 8 years ago
10.3390/antibiotics10030325
The Phosin PptA Plays a Negative Role in the Regulation of Antibiotic Production in Streptomyces lividans
Cited by: 7
Author(s): Noriyasu Shikura, Emmanuelle Darbon, Catherine Esnault, Ariane Deniset‐Besseau, Delin Xu, Clara Lejeune, Éric Jacquet, Naïma Nhiri, Laila Sago, David Cornu, Sebastiaan Werten, Cécile Martel, Marie‐Joëlle Virolle
Software Mentions: 4
Published: over 3 years ago
10.1186/1471-2164-12-5
The 'PUCE CAFE' Project: the First 15K Coffee Microarray, a New Tool for Discovering Candidate Genes correlated to Agronomic and Quality Traits
Cited by: 23
Author(s): Isabelle Privat, Amélie Bardil, Aureliano Bombarely, Dany Séverac, Christelle Le Dantec, Ivanna Fuentes, Lukas A. Mueller, Thierry Joët, David Pot, Séverine Foucrier, Stéphane Dussert, Thierry Leroy, Laurent Journot, Alexandre de Kochko, Claudine Campa, Marie‐Christine Combes, Philippe Lebailly, Benoît Bertrand
Software Mentions: 4
Published: almost 14 years ago
10.1186/s12870-020-02564-4
Identification of SNPs and InDels associated with berry size in table grapes integrating genetic and transcriptomic approaches
Cited by: 15
Author(s): Claudia Muñoz-Espinoza, Alex Di Génova, Alicia Sánchez, Juan Correa, Alonso Espinoza, Claudio Meneses, Alejandro Maass, Ariel Orellana, Patricio Hinrichsen
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-020-72704-1
Vitamin C–squalene bioconjugate promotes epidermal thickening and collagen production in human skin
Cited by: 33
Author(s): Ruxandra Gref, Claudine Deloménie, Andrei Maksimenko, Elodie Gouadon, Giuseppe Percoco, Elian Lati, Didier Desmaële, Fatima Zouhiri, Patrick Couvreur
Software Mentions: 2
Published: about 4 years ago
10.1186/1471-2164-7-58
Comparison of gene coverage of mouse oligonucleotide microarray platforms
Cited by: 26
Author(s): Ricardo A. Verdugo, Juan F. Medrano
Software Mentions: 2
Published: over 18 years ago
10.1038/srep45272
Bioenergetic Impairment in Congenital Muscular Dystrophy Type 1A and Leigh Syndrome Muscle Cells
Cited by: 21
Author(s): Cibely C. Fontes-Oliveira, Maarten M. Steinz, Peter Schneiderat, Hindrik Mulder, Madeleine Durbeej
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0002346
Homeostatic Imbalance between Apoptosis and Cell Renewal in the Liver of Premature Aging XpdTTD Mice
Cited by: 28
Author(s): Jeong Yoon Park, Miook Cho, Shanique Leonard, Brent Calder, I. Saira Mian, Woo Ho Kim, Susan Wijnhoven, Harry van Steeg, James R. Mitchell, G.T.J. van der Horst, Jan H.J. Hoeijmakers, Pinchas Cohen, Jan Vijg, Yousin Suh
Software Mentions: 2
Published: over 16 years ago
10.1038/srep31098
The Secreted Protease PrtA Controls Cell Growth, Biofilm Formation and Pathogenicity in Xylella fastidiosa
Cited by: 36
Author(s): Hossein Gouran, Hyrum Gillespie, Rafael Nascimento, Sandeep Chakraborty, Paulo A. Zaini, Aaron Jacobson, Brett S. Phinney, David Dolan, Blythe Durbin‐Johnson, Elena S. Antonova, Steven E. Lindow, Matthew S. Mellema, Luiz Ricardo Goulart, Abhaya M. Dandekar
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0132468
Meta-Analysis of Placental Transcriptome Data Identifies a Novel Molecular Pathway Related to Preeclampsia
Cited by: 32
Author(s): Miranda van Uitert, Perry D. Moerland, Daniel A. Enquobahrie, Hannele Laivuori, Joris A. M. van der Post, Carrie Ris‐Stalpers, Gijs B. Afink
Software Mentions: 2
Published: over 9 years ago
10.1186/s12967-018-1589-1
Improving knowledge on the activation of bone marrow fibroblasts in MGUS and MM disease through the automatic extraction of genes via a nonnegative matrix factorization approach on gene expression profiles
Cited by: 15
Author(s): Angelina Boccarelli, Flavia Esposito, Mauro Coluccia, Maria Antonia Frassanito, Angelo Vacca, Nicoletta Del Buono
Software Mentions: 2
Published: over 6 years ago
10.3390/biomedicines9091079
Salivary miR-30c-5p as Potential Biomarker for Detection of Oral Squamous Cell Carcinoma
Cited by: 7
Author(s): Nikolay Mehterov, Boyan Vladimirov, Andrea Sacconi, Claudio Pulito, Marcin Ruciński, Giovanni Blandino, Victoria Sarafian
Software Mentions: 2
Published: about 3 years ago
10.1186/bcr2256
Gene expression in murine mammary epithelial stem cell-like cells shows similarities to human breast cancer gene expression
Cited by: 46
Author(s): Cecilia Williams, Luísa A. Helguero, Karin Edvardsson, Lars Arne Haldosén, Jan‐Åke Gustafsson
Software Mentions: 2
Published: over 15 years ago
10.1371/journal.pone.0016016
The Temporal Dynamics of Differential Gene Expression in Aspergillus fumigatus Interacting with Human Immature Dendritic Cells In Vitro
Cited by: 56
Author(s): Oliver Morton, John J. Varga, Anke Hornbach, Markus Mezger, Helga Sennefelder, Susanne Kneitz, Oliver Kurzai, Sven Krappmann, Hermann Einsele, William C. Nierman, Thomas R. Rogers, Juergen Loeffler
Software Mentions: 2
Published: almost 14 years ago
10.1371/journal.pone.0028218
Engineered Single-Domain Antibodies with High Protease Resistance and Thermal Stability
Cited by: 112
Author(s): Greg Hussack, Takashi Hirama, Wen Ding, Ross MacKenzie, Jamshid Tanha
Software Mentions: 2
Published: almost 13 years ago
10.1186/s12933-018-0660-9
p66Shc gene expression in peripheral blood mononuclear cells and progression of diabetic complications
Cited by: 9
Author(s): Gian Paolo Fadini, Mattia Albiero, Benedetta Maria Bonora, Nicol Poncina, Saula Vigili de Kreutzenberg, Angelo Avogaro
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12933-018-0771-3
ACE2 polymorphisms associated with cardiovascular risk in Uygurs with type 2 diabetes mellitus
Cited by: 67
Author(s): Liang Cheng, Yanfang Li, Tianwang Guan, Yanxian Lai, Yan Shen, Abudurexiti Zeyaweiding, Haiyan Zhao, Fang Li, Tutiguli Maimaiti
Software Mentions: 1
Published: about 6 years ago
10.1186/s12933-021-01267-w
PAR-4/Ca2+-calpain pathway activation stimulates platelet-derived microparticles in hyperglycemic type 2 diabetes
Cited by: 11
Author(s): Alessandra Giannella, Giulio Ceolotto, Claudia Radu, Anna María Cattelan, Elisabetta Iori, Andrea Benetti, Fabrizio Fabris, Paolo Simioni, Angelo Avogaro, Saula Vigili de Kreutzenberg
Software Mentions: 1
Published: over 3 years ago
10.1186/s12944-018-0890-6
Association of ACE2 polymorphisms with susceptibility to essential hypertension and dyslipidemia in Xinjiang, China
Cited by: 50
Author(s): Yuning Pan, Tianyi Wang, Yanfang Li, Tianwang Guan, Yanxian Lai, Yan Shen, Abudurexiti Zeyaweiding, Tutiguli Maimaiti, Fang Li, Haiyan Zhao, Cheng Liu
Software Mentions: 1
Published: about 6 years ago
10.1186/s12934-015-0274-9
Combinatorial optimization of synthetic operons for the microbial production of p-coumaryl alcohol with Escherichia coli
Cited by: 16
Author(s): Philana van Summeren-Wesenhagen, Raphael Voges, Alexander Dennig, Sascha Sokolowsky, Stephan Noack, Ulrich Schwaneberg, Jan Marienhagen
Software Mentions: 1
Published: over 9 years ago
10.1186/1756-6606-7-46
microRNA-128a dysregulation in transgenic Huntington’s disease monkeys
Cited by: 68
Author(s): Jannet Kocerha, Yan Xu, Melinda S. Prucha, Dongming Zhao, Anthony W.S. Chan
Software Mentions: 1
Published: over 10 years ago
10.1186/1743-422X-4-24
Modulation of gene expression in a human cell line caused by poliovirus, vaccinia virus and interferon
Cited by: 9
Author(s): Bjørn Grinde, Marc Gayorfar, Gunnar Hoddevik
Software Mentions: 1
Published: almost 18 years ago
10.1371/journal.pbio.2004408
CDKN1B/p27 is localized in mitochondria and improves respiration-dependent processes in the cardiovascular system—New mode of action for caffeine
Cited by: 21
Author(s): Niloofar Ale‐Agha, Christine Goy, Philipp Jakobs, Ioakim Spyridopoulos, Stefanie Gonnissen, Nadine Dyballa-Rukes, Karin Aufenvenne, Florian von Ameln, Mark Zurek, Tim Spannbrucker, Olaf Eckermann, Sascha Jakob, Simone Gorreßen, Marcel Abrams, Maria Grandoch, Jens W. Fischer, Karl Köhrer, René Deenen, Klaus Unfried, Joachim Altschmied, Judith Haendeler
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0062337
Transcriptome Analysis of Acetyl-Homoserine Lactone-Based Quorum Sensing Regulation in Yersinia pestis
Cited by: 21
Author(s): Christopher N. LaRock, Jing Yu, Alexander R. Horswill, Matthew R. Parsek, F. Chris Minion
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0010045
The Onconeural Antigen cdr2 Is a Novel APC/C Target that Acts in Mitosis to Regulate C-Myc Target Genes in Mammalian Tumor Cells
Cited by: 33
Author(s): Kevin J. O’Donovan, Jennifer Diedler, Graeme C. Couture, John Fak, Robert B. Darnell
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0131015
Selection and Evaluation of Reference Genes for Reverse Transcription-Quantitative PCR Expression Studies in a Thermophilic Bacterium Grown under Different Culture Conditions
Cited by: 13
Author(s): Kathleen D. Cusick, Lisa A. Fitzgerald, Allison L. Cockrell, Justin C. Biffinger
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0001980
The T7-Primer Is a Source of Experimental Bias and Introduces Variability between Microarray Platforms
Cited by: 19
Author(s): Ron Kerkhoven, Daoud Sie, Marja Nieuwland, Mike Heimerikx, Jorma de Ronde, Wim Brugman, Arno Velds
Software Mentions: 1
Published: over 16 years ago
10.1371/journal.pone.0204197
Transcriptomic characterization of signaling pathways associated with osteoblastic differentiation of MC-3T3E1 cells
Cited by: 21
Author(s): Louis M. Luttrell, M. Saeed Dar, Diane Gesty‐Palmer, Hesham M. El‐Shewy, Katherine M. Robinson, Courtney J. Haycraft, Jeremy L. Barth
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0018658
Homologous Recombination Is Stimulated by a Decrease in dUTPase in Arabidopsis
Cited by: 23
Author(s): Emeline Dubois, Dolores Córdoba‐Cañero, Sophie Massot, Nicolas Siaud, Bertrand Gakière, Séverine Domenichini, Florence Guérard, Teresa Roldán-Arjona, Marie-Pascale Doutriaux
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0035561
Experimental Verification of a Predicted Intronic MicroRNA in Human NGFR Gene with a Potential Pro-Apoptotic Function
Cited by: 32
Author(s): Sepideh Parsi, Bahram Mohammad Soltani, Ebrahim Hosseini, S Ekhteraei Tousi, Seyed Javad Mowla
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0011535
Diagnosis of Partial Body Radiation Exposure in Mice Using Peripheral Blood Gene Expression Profiles
Cited by: 49
Author(s): Sarah K. Meadows, Holly K. Dressman, Pamela Daher, Heather A. Himburg, Jamie L. Russell, Phuong L. Doan, Nelson J. Chao, Joseph E. Lucas, Joseph R. Nevins, John P. Chute
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0064231
DDRGK1 Regulates NF-κB Activity by Modulating IκBα Stability
Cited by: 36
Author(s): Xi Peng, Deqiang Ding, Junzhi Zhou, Miao Wang, Yu‐Sheng Cong
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0001912
Gene Expression Signatures of Radiation Response Are Specific, Durable and Accurate in Mice and Humans
Cited by: 97
Author(s): SK Meadows, Holly K. Dressman, Garrett G. Muramoto, Heather A. Himburg, Alice B. Salter, Zhengzheng Wei, Geoffrey S. Ginsburg, Nelson J. Chao, Joseph R. Nevins, John P. Chute
Software Mentions: 1
Published: over 16 years ago
10.1371/journal.pone.0110608
Separate Introns Gained within Short and Long Soluble Peridinin-Chlorophyll a-Protein Genes during Radiation of Symbiodinium (Dinophyceae) Clade A and B Lineages
Cited by: 2
Author(s): Jay R. Reichman, Peter D. Vize
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0053264
Development of Two Murine Antibodies against Neospora caninum Using Phage Display Technology and Application on the Detection of N. caninum
Cited by: 13
Author(s): Jinhua Dong, Takahiro Otsuki, Tatsuya Kato, Tetsuya Kohsaka, Kazunori Ike, Enoch Y. Park
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0058987
Molecular Signatures in Arabidopsis thaliana in Response to Insect Attack and Bacterial Infection
Cited by: 60
Author(s): Pankaj Barah, Per Winge, Anna Kuśnierczyk, Diem Hong Tran, Atle M. Bones
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0103819
Association of BLM and BRCA1 during Telomere Maintenance in ALT Cells
Cited by: 29
Author(s): Samir Acharya, Zeenia Kaul, April Sandy Gocha, Alaina R. Martinez, J. Mansel Harris, Jeffrey D. Parvin, Joanna Groden
Software Mentions: 1
Published: over 10 years ago
10.3389/fcell.2020.00111
Downregulation of Lysosomal Acid Ceramidase Mediates HMGB1-Induced Migration and Proliferation of Mouse Coronary Arterial Myocytes
Cited by: 10
Author(s): Xinxu Yuan, Owais M. Bhat, Hannah Lohner, Yang Zhang, Pin‐Lan Li
Software Mentions: 1
Published: over 4 years ago
10.3389/fncel.2015.00146
Netrin-5 is highly expressed in neurogenic regions of the adult brain
Cited by: 30
Author(s): Satoru Yamagishi, Kohei Yamada, Masato Sawada, Suguru Nakano, Norio Mori, Kazunobu Sawamoto, Kohji Sato
Software Mentions: 1
Published: over 9 years ago
10.1186/gb-2006-7-3-r22
Cited by: 78
Author(s): Junjun Ma, Darren J. Morrow, John Fernandes, Virginia Walbot
Software Mentions: 1
Published: almost 19 years ago
10.1186/gb-2007-8-6-r120
Genome position and gene amplification
Cited by: 27
Author(s): Pavla Gajdušková, Antoine M. Snijders, Serena S. Kwek, Ritu Roydasgupta, Jane Fridlyand, Taku A. Tokuyasu, Daniel Pinkel, Donna G. Albertson
Software Mentions: 1
Published: almost 18 years ago
10.1016/j.heliyon.2020.e04506
Well-balanced immune response and protective efficacy induced by a single dose of live attenuated tetravalent dengue vaccine (KD-382) in monkeys
Cited by: 2
Author(s): Masaya Yoshimura, Yasuhiko Shinmura, Shota Takagi, Kazuhisa Kameyama, Kengo Sonoda, Fusataka Koide, Sutee Yoksan, Kazuhiko Kimachi
Software Mentions: 1
Published: over 4 years ago
10.1186/1423-0127-18-45
Stromal upregulation of lateral epithelial adhesions: Gene expression analysis of signalling pathways in prostate epithelium
Cited by: 12
Author(s): Karen Chambers, Joanna Pearson, Davide Pellacani, Naveed Aziz, Miodrag Gužvić, Christoph A. Klein, Shona Lang
Software Mentions: 1
Published: over 13 years ago
10.1186/1465-9921-10-81
Expression profiling identifies genes involved in emphysema severity
Cited by: 38
Author(s): Santiyagu M. Savarimuthu Francis, Jill E. Larsen, Sandra Pavey, Rayleen V. Bowman, Nicholas K. Hayward, Kwun M. Fong, Ian A. Yang
Software Mentions: 1
Published: about 15 years ago
10.1038/srep28344
Crystal structure of MytiLec, a galactose-binding lectin from the mussel Mytilus galloprovincialis with cytotoxicity against certain cancer cell types
Cited by: 33
Author(s): Daiki Terada, Fumihiro Kawai, Hideyuki Noguchi, Satoru Unzai, Imtiaj Hasan, Yuki Fujii, Sam-Yong Park, Yasuhiro Ozeki, J.R.H. Tame
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-34362-2
Effects of metformin on congenital muscular dystrophy type 1A disease progression in mice: a gender impact study
Cited by: 13
Author(s): Cibely C. Fontes-Oliveira, Bernardo Moreira Soares Oliveira, Zandra Körner, Vahid M. Harandi, Madeleine Durbeej
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-019-46391-6
Transcription Factors Regulation in Human Peripheral White Blood Cells during Hypobaric Hypoxia Exposure: an in-vivo experimental study
Cited by: 20
Author(s): Sandro Malacrida, Alessandra Giannella, Giulio Ceolotto, Carlo Reggiani, Alessandra Vezzoli, Simona Mrakic‐Sposta, Sarah Moretti, Rachel Turner, Marika Falla, Hermann Brugger, Giacomo Strapazzon
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-020-72342-7
The influenza virus NS1A binding protein gene modulates macrophages response to cytokines and phagocytic potential in inflammation
Cited by: 3
Author(s): Georgina Hotter, Chrysoula Mastora, Michaela Jung, Bernhard Brüne, Teresa Carbonell, Claudia Josa, Juan Ignacio Pérez-Calvo, Josep M. Cruzado, Roser Guiteras, Anna Solà
Software Mentions: 1
Published: about 4 years ago
10.1038/s41440-018-0166-6
Association of ACE2 genetic polymorphisms with hypertension-related target organ damages in south Xinjiang
Cited by: 75
Author(s): Yi Luo, Cheng Liu, Tianwang Guan, Yanfang Li, Yanxian Lai, Fang Li, Haiyan Zhao, Tutiguli Maimaiti, Abudurexiti Zeyaweiding
Software Mentions: 1
Published: almost 6 years ago
10.1155/2007/61028
Evaluation of Global RNA Amplification and Its Use for High-Throughput Transcript Analysis of Laser-Microdissected Endosperm
Cited by: 17
Author(s): Robert C. Day, Les McNoe, Richard C. Macknight
Software Mentions: 1
Published: over 17 years ago
10.1155/2014/147648
Protein-Protein Interaction Detection: Methods and Analysis
Cited by: 457
Author(s): V. Srinivasa Rao, Kudipudi Srinivas, G. N. Sujini, Gaurav Kumar
Software Mentions: 1
Published: over 10 years ago
10.1186/1750-2187-3-16
Wnt and Frizzled RNA expression in human mesenchymal and embryonic (H7) stem cells
Cited by: 30
Author(s): Ujunwa C. Okoye, Craig C. Malbon, Hsien Yu Wang
Software Mentions: 1
Published: about 16 years ago
10.18632/oncotarget.6230
Transcription factor LSF (TFCP2) inhibits melanoma growth
Cited by: 19
Author(s): Yuji Goto, Ichiro Yajima, Mayuko Y. Kumasaka, Nobutaka Ohgami, Asami Tanaka, Toyonori Tsuzuki, Yoshio Inoue, Satoshi Fukushima, Hironobu Ihn, Mikiko Kyoya, Hiroyuki Ohashi, Tamihiro Kawakami, Dorothy C. Bennett, Masashi Kato
Software Mentions: 1
Published: about 9 years ago
10.18632/oncotarget.17254
Inhibiting translesion DNA synthesis as an approach to combat drug resistance to DNA damaging agents
Cited by: 16
Author(s): Jung Hee Choi, Seol Kim, Edward A. Motea, Anthony J. Berdis
Software Mentions: 1
Published: over 7 years ago
10.18632/oncotarget.27036
CEMIP upregulates BiP to promote breast cancer cell survival in hypoxia
Cited by: 28
Author(s): Anna Banach, Yaping Jiang, Eric D. Roth, Cem Kuscu, Jian Cao, Richard Z. Lin
Software Mentions: 1
Published: over 5 years ago
10.1098/rsob.140022
Meiotic long non-coding meiRNA accumulates as a dot at its genetic locus facilitated by Mmi1 and plays as a decoy to lure Mmi1
Cited by: 49
Author(s): Yuichi Shichino, Akira Yamashita, Masayuki Yamamoto
Software Mentions: 1
Published: over 10 years ago
10.1038/s41598-021-81169-9
Detecting operons in bacterial genomes via visual representation learning
Cited by: 5
Author(s): Rida Assaf, Fangfang Xia, Rick Stevens
Software Mentions: 1
Published: almost 4 years ago
10.1186/ar1479
Cited by: 23
Author(s): Mathias Gebauer, Joachim Saas, Jill D. Haag, Uwe H. Dietz, Masaharu Takigawa, Eckart Bartnik, Thomas Aigner
Software Mentions: 1
Published: almost 20 years ago
10.1016/j.bbacli.2014.08.001
ATM, ATR and DNA-PKcs expressions correlate to adverse clinical outcomes in epithelial ovarian cancers
Cited by: 49
Author(s): Tarek M.A. Abdel-Fatah, Arvind Arora, Paul M. Moseley, Clare Coveney, Christina Perry, Kerstie Johnson, Christopher Kent, Graham Ball, Stephen Y. Chan, Srinivasan Madhusudan
Software Mentions: 1
Published: almost 10 years ago
10.1186/1471-2105-8-378
Toxicogenomic analysis incorporating operon-transcriptional coupling and toxicant concentration-expression response: analysis of MX-treated Salmonella
Cited by: 8
Author(s): William O. Ward, Carol D. Swartz, Steffen Porwollik, Sarah H. Warren, Nancy M. Hanley, Geremy W. Knapp, Michael McClelland, David M. DeMarini
Software Mentions: 1
Published: about 17 years ago
10.1186/1471-2105-5-117
Cited by: 23
Author(s): Kristian Flikka, Fekadu Yadetie, Astrid Lægreid, Inge Jonassen
Software Mentions: 1
Published: almost 21 years ago
10.1186/1472-6750-8-44
PCR-based gene synthesis to produce recombinant proteins for crystallization
Cited by: 19
Author(s): Damien Marsic, Ronny C. Hughes, Miranda Byrne‐Steele, Joseph D. Ng
Software Mentions: 1
Published: over 16 years ago
10.1186/1472-6750-12-19
Development of a diagnostic method for neosporosis in cattle using recombinant Neospora caninum proteins
Cited by: 10
Author(s): Jinhua Dong, Takahiro Otsuki, Tatsuya Kato, Enoch Y. Park
Software Mentions: 1
Published: over 12 years ago
10.1186/1471-213X-12-6
Transcriptional signature of accessory cells in the lateral line, using the Tnk1bp1:EGFP transgenic zebrafish line
Cited by: 28
Author(s): Martine Behra, Viviana Gallardo, John Bradsher, Aranza I. Torrado, Abdel G. Elkahloun, Jessica Sheehy, Seth Zonies, Kenna Mills Shaw, Chie Satou, Shin‐ichi Higashijima, Brant M. Weinstein, Shawn M. Burgess
Software Mentions: 1
Published: almost 13 years ago
10.1186/1471-213X-10-120
Molecular dissection of the migrating posterior lateral line primordium during early development in zebrafish
Cited by: 33
Author(s): Viviana Gallardo, Lina Jin, Martine Behra, Abdel G. Elkahloun, Eduardo J. Villablanca, Vincenzo Russo, Miguel L. Allende, Shawn M. Burgess
Software Mentions: 1
Published: almost 14 years ago
10.1186/1471-2156-8-27
Cytidine monophospho-N-acetylneuraminic acid hydroxylase (CMAH) mutations associated with the domestic cat AB blood group
Cited by: 62
Author(s): Barbara Bighignoli, T. Niini, Robert A. Grahn, Niels C Pedersen, L. V. Millon, M. Polli, M. Longeri, Leslie A. Lyons
Software Mentions: 1
Published: over 17 years ago
10.1186/1471-2164-7-328
Detection of transcriptional difference of porcine imprinted genes using different microarray platforms
Cited by: 30
Author(s): Shengdar Q. Tsai, Bashir Ahmed Mir, Amy C Martin, José L. Estrada, Steve Bischoff, Wu‐Chiao Hsieh, J. P. Cassady, B. A. Freking, Dan Nonneman, G. A. Rohrer, Jorge A. Piedrahita
Software Mentions: 1
Published: almost 18 years ago
10.1186/1471-2164-6-63
Three microarray platforms: an analysis of their concordance in profiling gene expression
Cited by: 102
Author(s): David Petersen, Gvr Chandramouli, Joel Geoghegan, Joanne Hilburn, Jonathon Paarlberg, Chang Hee Kim, David J. Munroe, Lisa Gangi, Jingjing Han, Raj K. Puri, Lou Staudt, John N. Weinstein, J. Carl Barrett, Jeffrey Green, Ernest S. Kawasaki
Software Mentions: 1
Published: over 19 years ago
10.1186/1471-2164-12-112
Identification of differentially expressed genes in chickens differing in muscle glycogen content and meat quality
Cited by: 44
Author(s): Vonick Sibut, Christelle Hennequet-Antier, Elisabeth Le Bihan‐Duval, Sylvain Marthey, M. J. Duclos, Cécile Berri
Software Mentions: 1
Published: over 13 years ago
10.1186/1471-2180-10-113
Identification of a siderophore utilization locus in nontypeable Haemophilus influenzae
Cited by: 14
Author(s): Daniel J. Morton, Elizabeth J Turman, Patrick D Hensley, Timothy M. VanWagoner, Thomas W. Seale, Paul W. Whitby, Terrence L. Stull
Software Mentions: 1
Published: almost 15 years ago
10.1186/1471-2199-6-6
Cited by: 11
Author(s): Michael A. Edelbrock, Hao He, Allen Schroering, Martha J. Fernström, Sangeetha Bathala, Kandace J. Williams
Software Mentions: 1
Published: almost 20 years ago
10.1186/1471-2229-10-185
Transcriptome responses to aluminum stress in roots of aspen (Populus tremula)
Cited by: 46
Author(s): Nadine Grisel, Stefan Zoller, Marzanna Künzli-Gontarczyk, Thomas Lampart, Martin Münsterkötter, Ivano Brunner, Lucien Bovet, Jean‐Pierre Métraux, Christoph Sperisen
Software Mentions: 1
Published: about 14 years ago
10.1186/1471-2229-9-104
Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: Extending MapMan ontology for grapevine
Cited by: 49
Author(s): Ana Rotter, Céline Camps, Marc Lohse, Christian Kappel, S. Pilati, Matjaž Hren, Mark Stitt, Pierre Coutos-Thévenot, C. Moser, Björn Usadel, Serge Delrot, Kristina Gruden
Software Mentions: 1
Published: almost 16 years ago
10.1155/2013/264651
Development of a Broad-Range 23S rDNA Real-Time PCR Assay for the Detection and Quantification of Pathogenic Bacteria in Human Whole Blood and Plasma Specimens
Cited by: 18
Author(s): Paolo Gaibani, Mara Mariconti, Gloria Bua, Sonia Bonora, Davide Sassera, Maria Paola Landini, Patrizia Mulatto, Stefano Novati, Claudio Bandi, Vittorio Sambri
Software Mentions: 1
Published: almost 12 years ago