cran: heatmap3 | Projects | Ecosyste.ms: Papers

10.1093/bioinformatics/btx657

heatmaply: an R package for creating interactive cluster heatmaps for online publishing
Cited by: 334
Author(s): Tal Galili, Alan O’Callaghan, Jonathan Savage, Carson Sievert
Software Mentions: 14
Published: about 7 years ago

10.4049/immunohorizons.1900097

Mass Cytometry Defines Virus-Specific CD4+ T Cells in Influenza Vaccination
Cited by: 3
Author(s): Priyanka B. Subrahmanyam, Tyson H. Holmes, Derek Lin, Laura F. Su, Gerlinde Obermoser, Jacques Banchereau, Virginia Pascual, Adolfo Garcı́a-Sastre, Randy A. Albrecht, Karolina Palucka, Mark M. Davis, Holden T. Maecker
Software Mentions: 13
Published: about 4 years ago

10.1038/s41598-019-41601-7

Characteristics and homogeneity of N6-methylation in human genomes
Cited by: 13
Author(s): Clare Pacini, Charles R. Bradshaw, Nigel Garrett, Magdalena J. Koziol
Software Mentions: 11
Published: over 5 years ago

10.1371/journal.pgen.1009376

Histone modification dynamics at H3K27 are associated with altered transcription of in planta induced genes in Magnaporthe oryzae
Cited by: 46
Author(s): Wei Zhang, Jun Huang, David E. Cook
Software Mentions: 10
Published: almost 4 years ago

10.3390/cancers13102498

Comparative Transcriptomics of Immune Checkpoint Inhibitor Myocarditis Identifies Guanylate Binding Protein 5 and 6 Dysregulation
Cited by: 16
Author(s): Daniel Finke, Markus Heckmann, Janek Salatzki, Johannes Riffel, Esther Herpel, Lucie Heinzerling, Benjamin Meder, Mirko Völkers, Oliver Müller, Norbert Frey, Hugo A. Katus, Florian Leuschner, Ziya Kaya, Lorenz Lehmann
Software Mentions: 9
Published: over 3 years ago

10.1016/j.devcel.2018.07.005

Transcriptional Convergence of Oligodendrocyte Lineage Progenitors during Development
Cited by: 184
Author(s): Sueli Marques, David van Bruggen, Darya Vanichkina, Elisa M. Floriddia, Hermany Munguba, Leif Väremo, Stefania Giacomello, Ana Mendanha Falcão, Mandy Meijer, Åsa K. Björklund, Jens Hjerling-Leffler, Ryan J. Taft, Gonçalo Castelo‐Branco
Software Mentions: 8
Published: over 6 years ago

10.1002/1878-0261.12139

Transcription instability in high-risk neuroblastoma is associated with a global perturbation of chromatin domains
Cited by: 4
Author(s): Carlo Zanon, Gian Paolo Tonini
Software Mentions: 8
Published: about 7 years ago

10.1111/1751-7915.13634

Soil microbiota influences clubroot disease by modulating Plasmodiophora brassicae and Brassica napus transcriptomes
Cited by: 19
Author(s): Stéphanie Daval, Kévin Gazengel, Arnaud Belcour, Juliette Linglin, Anne‐Yvonne Guillerm‐Erckelboudt, Alain Sarniguet, Maria Manzanares-Dauleux, Lionel Lebreton, Christophe Mougel
Software Mentions: 7
Published: over 4 years ago

10.18632/aging.101356

A hypothesis-driven approach identifies CDK4 and CDK6 inhibitors as candidate drugs for treatments of adrenocortical carcinomas
Cited by: 22
Author(s): Djihad Hadjadj, Su-Jung Kim, Thomas Denecker, Laura Ben Driss, Jean‐Charles Cadoret, Chrystelle Maric, Giuseppe Baldacci, Fabien Fauchereau
Software Mentions: 7
Published: almost 7 years ago

10.1186/s12864-019-6349-y

Molecular evolution and expression of opsin genes in Hydra vulgaris
Cited by: 16
Author(s): Aide Macias-Muñoz, Rabi Murad, A Mortazavi
Software Mentions: 7
Published: about 5 years ago

10.3390/nu10091254

Changes in Plasma Acylcarnitine and Lysophosphatidylcholine Levels Following a High-Fructose Diet: A Targeted Metabolomics Study in Healthy Women
Cited by: 26
Author(s): Anita Gonzalez‐Granda, Antje Damms-Machado, Maryam Basrai, Stephan C. Bischoff
Software Mentions: 7
Published: over 6 years ago

10.3390/nu12113444

Fructose-Induced Intestinal Microbiota Shift Following Two Types of Short-Term High-Fructose Dietary Phases
Cited by: 31
Author(s): Julia Beisner, Anita Gonzalez‐Granda, Maryam Basrai, Antje Damms-Machado, Stephan C. Bischoff
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0204542

NOJAH: NOt Just Another Heatmap for genome-wide cluster analysis
Cited by: 9
Author(s): Manali Rupji, Bhakti Dwivedi, Jeanne Kowalski
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0255139

De novo sequencing and analysis of the transcriptome of two highbush blueberry (Vaccinium corymbosum L.) cultivars ‘Bluecrop’ and ‘Legacy’ at harvest and following post-harvest storage
Cited by: 2
Author(s): María Cárcamo de la Concepción, Daniel J. Sargent, Nada Šurbanovski, Richard Colgan, Marco Moretto
Software Mentions: 6
Published: over 3 years ago

10.1186/s13148-020-00998-z

Identification of DNA methylation signatures associated with poor outcome in lower-risk Stage, Size, Grade and Necrosis (SSIGN) score clear cell renal cell cancer
Cited by: 8
Author(s): Louis El Khoury, Shuang Fu, Ryan A. Hlady, Ryan T. Wagner, Liguo Wang, Jeanette E. Eckel‐Passow, Erik P. Castle, Melissa L. Stanton, R. Houston Thompson, Alexander S. Parker, Thai H. Ho, Keith D. Robertson
Software Mentions: 6
Published: almost 4 years ago

10.1002/pld3.142

Tomato locule number and fruit size controlled by natural alleles of lc and fas
Cited by: 61
Author(s): Yi Hsuan Chu, Jyan Chyun Jang, Zejun Huang, Esther van der Knaap
Software Mentions: 5
Published: over 5 years ago

10.3390/diagnostics10090617

microRNA Expression Profile in Single Hormone Receptor-Positive Breast Cancers Is Mainly Dependent on HER2 Status—A Pilot Study
Cited by: 6
Author(s): Michał Kunc, Marta Popęda, Magdalena Niemira, Anna Szałkowska, Michał Bieńkowski, Rafał Pęksa, Aleksandra Łacko, Barbara Radecka, Marcin Braun, Joanna Pikiel, Maria Litwiniuk, Katarzyna Pogoda, Ewa Iżycka‐Świeszewska, Adam Krętowski, Anna Żaczek, Wojciech Biernat, Elżbieta Senkus
Software Mentions: 5
Published: over 4 years ago

10.1093/sleep/zsy186

Identifying and validating blood mRNA biomarkers for acute and chronic insufficient sleep in humans: a machine learning approach
Cited by: 30
Author(s): Emma Laing, Carla S. Möller-Levet, Derk‐Jan Dijk, Simon N. Archer
Software Mentions: 5
Published: about 6 years ago

10.1186/s40168-019-0651-4

Gut microbiota in HIV–pneumonia patients is related to peripheral CD4 counts, lung microbiota, and in vitro macrophage dysfunction
Cited by: 23
Author(s): Meera K. Shenoy, Douglas Fadrosh, David L. Lin, William Worodria, Patrick Byanyima, Emmanuel Musisi, Sylvia Kaswabuli, Josephine Zawedde, Ingvar Sanyu, Emily Chang, Serena Fong, Kathryn McCauley, J. Lucian Davis, Laurence Huang, Susan V. Lynch
Software Mentions: 5
Published: almost 6 years ago

10.1098/rsos.200792

Tissue-specific developmental regulation and isoform usage underlie the role ofdoublesexin sex differentiation and mimicry inPapilioswallowtails
Cited by: 13
Author(s): Riddhi Deshmukh, Dhanashree Lakhe, Krushnamegh Kunte
Software Mentions: 5
Published: over 4 years ago

10.1186/s12915-017-0359-5

Low-cell-number, single-tube amplification (STA) of total RNA revealed transcriptome changes from pluripotency to endothelium
Cited by: 5
Author(s): Yi‐Hsuan Lee, Ya Wen Hsueh, Yunyan Peng, Kung Chao Chang, Kuen‐Jer Tsai, Han Sun, Ih Jen Su, Po Min Chiang
Software Mentions: 5
Published: almost 8 years ago

10.1172/jci.insight.138772

IL-32γ potentiates tumor immunity in melanoma
Cited by: 19
Author(s): Thomas Gruber, Mirela Kremenovic, Hassan Sadozai, Nives Rombini, Lukas Baeriswyl, Fabienne Maibach, Robert L. Modlin, Michel Gilliet, Diego von Werdt, Robert E. Hunger, S. Morteza Seyed Jafari, Giulia Parisi, Gabriel Abril-Rodríguez, Antoni Ribas, Mirjam Schenk
Software Mentions: 5
Published: over 4 years ago

10.1038/s41438-021-00465-7

Genetic characterization of an almond germplasm collection and volatilome profiling of raw and roasted kernels
Cited by: 10
Author(s): Mario Di Guardo, Brian Farneti, Iuliia Khomenko, Giulia Modica, A. Mosca, Gaetano Distefano, Luca Bianco, Michela Troggio, Francesco Sottile, Stefano La Malfa, Franco Biasioli, Alessandra Gentile
Software Mentions: 5
Published: almost 4 years ago

10.3389/fphys.2019.01305

The Regulation of Ruminal Short-Chain Fatty Acids on the Functions of Rumen Barriers
Cited by: 28
Author(s): Hong Shen, Zhihui Xu, Zanming Shen, Zhongyan Lu
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2019.01204

Influence of Light on Particulate Organic Matter Utilization by Attached and Free-Living Marine Bacteria
Cited by: 22
Author(s): Laura Gómez‐Consarnau, David M. Needham, Peter K. Weber, Jed A. Fuhrman, Xavier Mayali
Software Mentions: 5
Published: over 5 years ago

10.3390/cancers11010041

Epilepsy Associates with Decreased HIF-1α/STAT5b Signaling in Glioblastoma
Cited by: 11
Author(s): Sharon Berendsen, Wim G.M. Spliet, Marjolein Geurts, Wim Van Hecke, Tatjana Seute, Tom J. Snijders, Vincent Bours, Erica H. Bell, Arnab Chakravarti, Pierre A. Robe
Software Mentions: 5
Published: almost 6 years ago

10.1007/s11306-017-1259-y

Non-invasive real time monitoring of yeast volatilome by PTR-ToF-MS
Cited by: 20
Author(s): Iuliia Khomenko, Irene Stefanini, Luca Cappellin, Valentina Cappelletti, Pietro Franceschi, Duccio Cavalieri, T.D. Märk, Franco Biasioli
Software Mentions: 4
Published: over 7 years ago

10.1016/j.celrep.2020.02.021

Interplay of Staphylococcal and Host Proteases Promotes Skin Barrier Disruption in Netherton Syndrome
Cited by: 49
Author(s): Michael R. Williams, Laura Cau, Yichen Wang, Drishti Kaul, James A. Sanford, Livia S. Zaramela, Shadi Khalil, A. Butcher, Karsten Zengler, Alexander R. Horswill, Christopher L. Dupont, Alain Hovnanian, Richard L. Gallo
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2019.00250

Transcriptomic Analysis of the Brucella melitensis Rev.1 Vaccine Strain in an Acidic Environment: Insights Into Virulence Attenuation
Cited by: 13
Author(s): Mali Salmon‐Divon, Tamar Zahavi, Jonathan D. Kornspan
Software Mentions: 4
Published: almost 6 years ago

10.1155/2014/986048

Advanced Heat Map and Clustering Analysis Using Heatmap3
Cited by: 187
Author(s): Shilin Zhao, Yan Guo, Quanhu Sheng, Yu Shyr
Software Mentions: 4
Published: almost 11 years ago

10.1038/s42003-020-0891-7

Chytrid fungi distribution and co-occurrence with diatoms correlate with sea ice melt in the Arctic Ocean
Cited by: 25
Author(s): Estelle Kilias, Leandro Junges, Luka Šupraha, Guy Leonard, Katja Metfies, Thomas A. Richards
Software Mentions: 4
Published: over 4 years ago

10.3389/fimmu.2018.01829

Human Bone Marrow-Resident Natural Killer Cells Have a Unique Transcriptional Profile and Resemble Resident Memory CD8+ T Cells
Cited by: 28
Author(s): Janine Melsen, Gertjan Lugthart, Carly Vervat, Szymon M. Kiełbasa, Sander A.J. van der Zeeuw, Henk P.J. Buermans, Monique M. van Ostaijen-ten Dam, Arjan C. Lankester, Marco W. Schilham
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pbio.2005359

Comparative genomics and the nature of placozoan species
Cited by: 63
Author(s): Michael Eitel, Warren R. Francis, Frédérique Varoqueaux, Jean Daraspe, Hans-Jürgen Osigus, Stefan Krebs, Sergio Vargas, Helmut Blum, Gray A. Williams, Bernd Schierwater, Gert Wörheide
Software Mentions: 4
Published: over 6 years ago

10.5414/NP301110

Molecular diagnostic testing of diffuse gliomas in the real-life setting: A practical approach
Cited by: 8
Author(s): Michał Bieńkowski, Adelheid Wöhrer, Patrizia Moser, Melitta Kitzwögerer, Gerda Ricken, Thomas Ströbel, Johannes A. Hainfellner
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms21082966

Differential Expression and Function of Bicellular Tight Junctions in Skin and Oral Wound Healing
Cited by: 20
Author(s): Trevor R. Leonardo, Junhe Shi, Dandan Chen, Harsh M. Trivedi, Lin Chen
Software Mentions: 4
Published: over 4 years ago

10.1186/s12864-016-3130-3

Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)
Cited by: 15
Author(s): Gladys K. Andino, Michael Gribskov, Denis L. Anderson, Jay D. Evans, Greg J. Hunt
Software Mentions: 4
Published: about 8 years ago

10.3389/fmicb.2018.01110

The Human Virome Protein Cluster Database (HVPC): A Human Viral Metagenomic Database for Diversity and Function Annotation
Cited by: 18
Author(s): Ali H. A. Elbehery, Judith Feichtmayer, Dave Singh, Christian Griebler, Li Deng
Software Mentions: 3
Published: over 6 years ago

10.1186/s12870-020-02384-6

Identification of polycomb repressive complex 1 and 2 core components in hexaploid bread wheat
Cited by: 13
Author(s): Beáta Strejčková, Radim Čegan, Aleš Pečinka, Zbyněk Milec, Jan Šafář
Software Mentions: 3
Published: about 4 years ago

10.7717/peerj.7488

Factors associated with the composition and diversity of the cervical microbiota of reproductive-age Black South African women: a retrospective cross-sectional study
Cited by: 17
Author(s): Harris Onywera, Anna‐Lise Williamson, Zizipho Z. A. Mbulawa, David Coetzee, Tracy L. Meiring
Software Mentions: 3
Published: over 5 years ago

10.1038/s41419-020-03151-z

Age-severity matched cytokine profiling reveals specific signatures in Covid-19 patients
Cited by: 82
Author(s): Roberta Angioni, Ricardo Sánchez‐Rodríguez, Fabio Munari, Nicole Bertoldi, Diletta Arcidiacono, Silvia Cavinato, Davide Marturano, Alice Zaramella, Stefano Realdon, Annamaria Cattelan, Antonella Viola, Barbara Molon
Software Mentions: 3
Published: about 4 years ago

10.1186/s13059-019-1892-z

Whole genome DNA sequencing provides an atlas of somatic mutagenesis in healthy human cells and identifies a tumor-prone cell type
Cited by: 39
Author(s): Irene Franco, Hafdís T. Helgadottir, Aldo Moggio, Malin Larsson, Peter Vrtačnik, Ada Johansson, Nina Norgren, Per Lundin, David Mas-Ponte, Jan Nordström, Torbjörn Lundgren, Peter Stenvinkel, Lars Wennberg, Fran Supek, Maria Eriksson
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-018-31765-z

Neurotransmitter identity and electrophysiological phenotype are genetically coupled in midbrain dopaminergic neurons
Cited by: 21
Author(s): Mónica Tapia, Pierre Yves Baudot, Christine Formisano-Tréziny, Martial A Dufour, Simone Temporal, M. Lasserre, Béatrice Marquèze-Pouey, Jean Gabert, Kazuto Kobayashi, Jean-Marc Goaillard
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-47382-3

Tumor intrinsic immunity related proteins may be novel tumor suppressors in some types of cancer
Cited by: 16
Author(s): Donghai Xiong, Yian Wang, Ming You
Software Mentions: 3
Published: over 5 years ago

10.3390/cancers12061572

Quantitative Analysis of Differential Expression of HOX Genes in Multiple Cancers
Cited by: 4
Author(s): Orit Adato, Yaron Orenstein, Juri Kopolovic, Tamar Juven‐Gershon, Ron Unger
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0218456

High similarity of IgG antibody profiles in blood and saliva opens opportunities for saliva based serology
Cited by: 39
Author(s): Peter Hettegger, Jasmin Huber, Katharina Paßecker, Regina Soldo, Ulrike Kegler, Christa Nöhammer, Andreas Weinhäusel
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0174984

De novo transcriptome analysis of the excretory tubules of Carausius morosus (Phasmatodea) and possible functions of the midgut ‘appendices’
Cited by: 9
Author(s): Matan Shelomi
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0226448

Genomic structure and transcript analysis of the Rapid Alkalinization Factor (RALF) gene family during host-pathogen crosstalk in Fragaria vesca and Fragaria x ananassa strawberry
Cited by: 7
Author(s): Francesca Negrini, Kevin E. O’Grady, Marko Hyvönen, Kevin M. Folta, Elena Baraldi
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pgen.1008043

Somatic LINE-1 retrotransposition in cortical neurons and non-brain tissues of Rett patients and healthy individuals
Cited by: 43
Author(s): Boxun Zhao, Qixi Wu, Adam Yongxin Ye, Jing Guo, Xianing Zheng, Xiaoxu Yang, Linlin Yan, Qingrong Liu, Thomas M. Hyde, Liping Wei, August Yue Huang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41380-019-0583-1

Long-read sequencing reveals the complex splicing profile of the psychiatric risk gene CACNA1C in human brain
Cited by: 88
Author(s): Michael B. Clark, Tomasz Wrzesiński, Aintzane B. Garcia, Nicola A. L. Hall, Joel E. Kleinman, Thomas M. Hyde, Weinberger, Paul J. Harrison, Wilfried Haerty, Elizabeth M. Tunbridge
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-017-13887-y

The histone variant H3.3 G34W substitution in giant cell tumor of the bone link chromatin and RNA processing
Cited by: 40
Author(s): Jinyeong Lim, Joo Hyun Park, Annika Baude, Yeongran Yoo, Yeon Kyu Lee, Christopher R. Schmidt, Jong Bae Park, Jörg Fellenberg, Josef Zustin, Florian Haller, Irene Krücken, Hyun Guy Kang, Christoph Plass, Anders M. Lindroth
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-017-17242-z

The sensitivity and stability of bacterioplankton community structure to wind-wave turbulence in a large, shallow, eutrophic lake
Cited by: 3
Author(s): Jian Zhou, Boqiang Qin, Xiaoxia Han, Decai Jin, Zhiping Wang
Software Mentions: 2
Published: about 7 years ago

10.3390/microorganisms8040558

Harvesting Mango Fruit with a Short Stem-End Altered Endophytic Microbiome and Reduce Stem-End Rot
Cited by: 19
Author(s): Ortal Galsurker, Sonia Diskin, Danielle Duanis-Assaf, Adi Doron‐Faigenboim, Dalia Maurer, Oleg Feygenberg, Noam Alkan
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-019-57228-7

Biodegradability of woody film produced by solvent volatilisation of Japanese Beech solution
Cited by: 2
Author(s): Т. В. Волкова, Sui Kanazawa, Norihisa Matsuura, Ryoko Yamamoto-Ikemoto
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-74241-3

A 1H-NMR approach to myocardial energetics
Cited by: 3
Author(s): Jackie A. Heitzman, Tyler C. Dobratz, Kaleb D. Fischer, De Wayne Townsend
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-77271-z

Bacterial composition of nasal discharge in children based on highly accurate 16S rRNA gene sequencing analysis
Cited by: 9
Author(s): Kaoru Haro, Midori Ogawa, Mitsumasa Saito, Koichi Kusuhara, Kazumasa Fukuda
Software Mentions: 2
Published: about 4 years ago

10.1016/j.ccell.2017.10.004

A Paradoxical Tumor-Suppressor Role for the Rac1 Exchange Factor Vav1 in T Cell Acute Lymphoblastic Leukemia
Cited by: 35
Author(s): Javier Robles‐Valero, L. Francisco Lorenzo‐Martín, Mauricio Menacho-Márquez, Isabel Fernández‐Pisonero, Antonio Abad, Mireia Camós, Marı́a L. Toribio, Lluís Espinosa, Anna Bigas, Xosé R. Bustelo
Software Mentions: 2
Published: about 7 years ago

10.1128/mSystems.00081-21

MicroRNA-Mediated Regulation of Initial Host Responses in a Symbiotic Organ
Cited by: 2
Author(s): Silvia Moriano‐Gutierrez, Edward G. Ruby, Margaret J. McFall‐Ngai
Software Mentions: 2
Published: over 3 years ago

10.1038/s41388-018-0433-7

Vav proteins maintain epithelial traits in breast cancer cells using miR-200c-dependent and independent mechanisms
Cited by: 12
Author(s): L. Francisco Lorenzo‐Martín, Carmen Citterio, Mauricio Menacho‐Marquez, Javier Conde, Romain M. Larive, Sonia Rodríguez-Fdez, Ramón Garcı́a-Escudero, Javier Robles‐Valero, Myriam Cuadrado, Isabel Fernández‐Pisonero, Mercedes Dosil, María A. Sevilla, María J. Montero, Pedro M. Fernández-Salguero, Jesús M. Paramio, Xosé R. Bustelo
Software Mentions: 2
Published: over 6 years ago

10.15252/emmm.201708289

Anti‐tumor efficacy of a novel CLK inhibitor via targeting RNA splicing and MYC‐dependent vulnerability
Cited by: 63
Author(s): Kenichi Iwai, Masahiro Yaguchi, Kazuho Nishimura, Yoshiyuki Yamamoto, Toshiya Tamura, Daisuke Nakata, Ryo Dairiki, Yoichi Kawakita, Ryo Mizojiri, Yoshikatsu Ito, Masaharu Asano, Hironobu Maezaki, Yusuke Nakayama, Misato Kaishima, Kôzô Hayashi, Mika Teratani, Shuichi Miyakawa, Misa Iwatani, Maki Miyamoto, Michael G. Klein, Wes Lane, G. Snell, Richard Tjhen, Xingyue He, Sai Murali Krishna Pulukuri, Toshiyuki Nomura
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2019.00099

CD11c+ Cells Are Gatekeepers for Lymphocyte Trafficking to Infiltrated Islets During Type 1 Diabetes
Cited by: 21
Author(s): Adam Sandor, Robin S. Lindsay, Nathan Dyjack, Jennifer C Whitesell, Cydney Rios, Brenda J. Bradley, Kathryn Haskins, David Serreze, Aron M. Geurts, Yi-Guang Chen, Max A. Seibold, Jordan Jacobelli, Rachel S. Friedman
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0222717

Adverse prognosis of glioblastoma contacting the subventricular zone: Biological correlates
Cited by: 27
Author(s): Sharon Berendsen, Emma J. van Bodegraven, Tatjana Seute, Wim G.M. Spliet, Marjolein Geurts, Jeroen Hendrikse, Laurent Schoysman, Willemijn B Huiszoon, Meri R. J. Varkila, Soufyan Rouss, Erica H. Bell, Jérôme Kroonen, Arnab Chakravarti, Vincent Bours, Tom J. Snijders, Pierre A. Robe
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2015.01377

Genetic Resistance Determinants, In Vitro Time-Kill Curve Analysis and Pharmacodynamic Functions for the Novel Topoisomerase II Inhibitor ETX0914 (AZD0914) in Neisseria gonorrhoeae
Cited by: 40
Author(s): Sunniva Foerster, Daniel Golparian, Susanne Jacobsson, Lucy J. Hathaway, Nicola Low, William M. Shafer, Christian L. Althaus, Magnus Unemo
Software Mentions: 1
Published: about 9 years ago

10.1155/2015/187803

Advances in Computational Genomics
Cited by: 0
Author(s): Leng Han, Yan Guo, Zhixi Su, Siyuan Zheng, Zhi-xiang Lu
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13059-015-0847-2

Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging
Cited by: 47
Author(s): Shona H. Wood, Sipko van Dam, Thomas Craig, Robi Tăcutu, Amy O’Toole, B.J. Merry, João Pedro de Magalhães
Software Mentions: 1
Published: about 9 years ago

10.1186/s13048-019-0529-x

Mitochondrial dysfunction and endoplasmic reticulum stress involved in oocyte aging: an analysis using single-cell RNA-sequencing of mouse oocytes
Cited by: 35
Author(s): Tao Zhang, Qingsong Xi, Dan Wang, Jingjing Li, Meng Wang, Dan Li, Lixia Zhu, Lei Jin
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0182636

Host plant driven transcriptome plasticity in the salivary glands of the cabbage looper (Trichoplusia ni)
Cited by: 22
Author(s): Loren J. Rivera-Vega, David A. Galbraith, Christina M. Grozinger, Gary W. Felton
Software Mentions: 1
Published: over 7 years ago

10.1016/j.ijppaw.2019.07.009

Intraspecific genetic variation in Trichinella spiralis and Trichinella britovi populations circulating in different geographical regions of Poland
Cited by: 8
Author(s): Ewa Bilska–Zając, Frits Franssen, Mirosław Różycki, Arno Swart, Jacek Karamon, Jacek Sroka, Jolanta Zdybel, Anna Ziętek-Barszcz, Tomasz Cencek
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.3000934

The noncoding small RNA SsrA is released by Vibrio fischeri and modulates critical host responses
Cited by: 31
Author(s): Silvia Moriano‐Gutierrez, Clotilde Bongrand, Tara Essock‐Burns, Leo Wu, Margaret J. McFall‐Ngai, Edward G. Ruby
Software Mentions: 1
Published: about 4 years ago

10.1002/ece3.6392

Soil microbial communities associated with giant sequoia: How does the world's largest tree affect some of the world's smallest organisms?
Cited by: 4
Author(s): Chelsea J. Carey, Sydney I. Glassman, Thomas D. Bruns, Emma L. Aronson, Stephen C. Hart
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms18081620

Melatonin Decreases Glucose Metabolism in Prostate Cancer Cells: A 13C Stable Isotope-Resolved Metabolomic Study
Cited by: 37
Author(s): David Hevia, Pedro González-Menéndez, Mario Fernández‐Fernández, Sergio Cueto, Pablo Rodríguez-González, J. Ignacio García Alonso, Juan C. Mayo, Rosa M. Sainz
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.00599-17

Modulation of Aneuploidy in Leishmania donovani during Adaptation to Different In Vitro and In Vivo Environments and Its Impact on Gene Expression
Cited by: 140
Author(s): Franck Dumetz, Hideo Imamura, Mandy Sanders, Veronika Šeblová, Jitka Myšková, Pascale Pescher, Manu Vanaerschot, Conor J. Meehan, Bart Cuypers, Géraldine De Muylder, Gérald F. Späth, Giovanni Bussotti, Joris Robert Vermeesch, Matthew Berriman, James A. Cotton, Petr Volf, Jean‐Claude Dujardin, Malgorzata A. Domagalska
Software Mentions: 1
Published: over 7 years ago

10.1186/s12885-018-4077-3

In vitro and in silico validation of CA3 and FHL1 downregulation in oral cancer
Cited by: 6
Author(s): Cláudia Maria Pereira, Ana Carolina de Carvalho, Felipe Rodrigues da Silva, Matias Eliseo Melendez, Roberta Cardim Lessa, Valéria C.C. Andrade, Luiz Paulo Kowalski, André Luiz Vettore, André Lopes Carvalho
Software Mentions: 1
Published: almost 7 years ago

10.1128/mSystems.00345-18

Genomic Characterization and Virulence Potential of Two Fusarium oxysporum Isolates Cultured from the International Space Station
Cited by: 23
Author(s): Camilla Urbaniak, Peter van Dam, Alexander Zaborin, Olga Zaborina, Jack A. Gilbert, Tamás Török, Clay C. C. Wang, Kasthuri Venkateswaran
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-15-S10-P16

Heatmap3: an improved heatmap package with more powerful and convenient features
Cited by: 108
Author(s): Shilin Zhao, Yan Guo, Quanhu Sheng, Yu Shyr
Software Mentions: 1
Published: about 10 years ago

Projects: cran: heatmap3

Papers Mentioning heatmap3 74