Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-019-41601-7

https://doi.org/10.1038/s41598-019-41601-7

Characteristics and homogeneity of N6-methylation in human genomes

Cited by: 13
Author(s): Clare Pacini, Charles R. Bradshaw, Nigel Garrett, Magdalena J. Koziol
Published: over 5 years ago

Software Mentions 11

bioconductor: ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
Papers that mentioned: 161
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: qusage
qusage: Quantitative Set Analysis for Gene Expression
Papers that mentioned: 4
bioconductor: regioneR
Association analysis of genomic regions based on permutation tests
Papers that mentioned: 30
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browser
Papers that mentioned: 107
bioconductor: VariantAnnotation
Annotation of Genetic Variants
Papers that mentioned: 47
cran: heatmap3
An Improved Heatmap Package
Papers that mentioned: 74
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759