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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1371/journal.pgen.1009376

https://doi.org/10.1371/journal.pgen.1009376

Histone modification dynamics at H3K27 are associated with altered transcription of in planta induced genes in Magnaporthe oryzae

Cited by: 46
Author(s): Wei Zhang, Jun Huang, David E. Cook
Published: over 4 years ago

Software Mentions 10

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: Gviz
Plotting data and annotation information along genomic coordinates
Papers that mentioned: 134
Very Likely Science (100)
cran: agricolae
Statistical Procedures for Agricultural Research
Papers that mentioned: 260
Very Likely Science (93)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: heatmap3
An Improved Heatmap Package
Papers that mentioned: 74
Very Likely Science (83)
cran: MASS
Support Functions and Datasets for Venables and Ripley's MASS
Papers that mentioned: 2,353
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
Very Likely Science (90)
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
Very Likely Science (100)
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
Very Likely Science (90)