Ecosyste.ms: Papers

10.1093/bib/bbv080

Public data and open source tools for multi-assay genomic investigation of disease
Cited by: 47
Author(s): Lavanya Kannan, Marcel Ramos, Angela Re, Nehmé El-Hachem, Zhaleh Safikhani, Deena M.A. Gendoo, Sean Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe‐Kains, Levi Waldron
Software Mentions: 15
Published: about 9 years ago

10.3389/fmolb.2020.598583

SARS-CoV-2 Proteins Exploit Host’s Genetic and Epigenetic Mediators for the Annexation of Key Host Signaling Pathways
Cited by: 29
Author(s): A. A. Khan, Abul B.M.M.K. Islam
Software Mentions: 7
Published: almost 4 years ago

10.1186/s12967-020-02695-0

Transcriptome of nasopharyngeal samples from COVID-19 patients and a comparative analysis with other SARS-CoV-2 infection models reveal disparate host responses against SARS-CoV-2
Cited by: 39
Author(s): Abul B.M.M.K. Islam, A. A. Khan, Rasel Ahmed, Md. Sabbir Hossain, Shah Md. Tamim Kabir, Md Shahidul Islam, Amam Zonaed Siddiki
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-020-76404-8

Lung transcriptome of a COVID-19 patient and systems biology predictions suggest impaired surfactant production which may be druggable by surfactant therapy
Cited by: 67
Author(s): Abul B.M.M.K. Islam, A. A. Khan
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-019-40786-1

Integrated analysis of relapsed B-cell precursor Acute Lymphoblastic Leukemia identifies subtype-specific cytokine and metabolic signatures
Cited by: 18
Author(s): M. Schroêder, Lorenz Bastian, Cornelia Eckert, Nicola Gökbuget, Alva Rani James, Jutta Ortiz Tanchez, Cornelia Schlee, Konstandina Isaakidis, Björn Häupl, Katharina Baum, Oscar Arturo Migueles Lozano, Khouloud Kouidri, Kuan‐Ting Pan, Henning Urlaub, Stefan Schwartz, Thomas Burmeister, Arend von Stackelberg, Dieter Hoelzer, Heike Pfeiffer, Michael A. Rieger, Stefanie Göllner, Thomas Oellerich, Martin Horstman, Martin Schrappe, Jana Wolf, Renate Kirschner-Schwabe, Monika Brüggemann, Carsten Müller‐Tidow, Hubert Serve, Martin Neumann, Claudia D. Baldus
Software Mentions: 5
Published: over 5 years ago

10.1186/s13321-014-0044-4

InCHlib – interactive cluster heatmap for web applications
Cited by: 45
Author(s): Ctibor Škuta, Petr Bartůněk, Daniel Svozil
Software Mentions: 5
Published: about 10 years ago

10.1371/journal.pone.0101239

Visualizing Molecular Profiles of Glioblastoma with GBM-BioDP
Cited by: 49
Author(s): Orieta Celiku, Seth Johnson, Shuping Zhao, Kevin Camphausen, Uma Shankavaram
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0090706

A Bulk Segregant Gene Expression Analysis of a Peach Population Reveals Components of the Underlying Mechanism of the Fruit Cold Response
Cited by: 36
Author(s): Clara Pons, Cristina Martí, Javier Forment, Carlos H. Crisosto, Abhaya M. Dandekar, Antonio Granell
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pgen.1003503

HDAC7 Is a Repressor of Myeloid Genes Whose Downregulation Is Required for Transdifferentiation of Pre-B Cells into Macrophages
Cited by: 55
Author(s): Bruna Barneda-Zahonero, Lidia Román-González, Olga Collazo, Hasan Rafati, Abul B.M.M.K. Islam, Lars H. Bussmann, Alessandro Di Tullio, Luisa I. De Andres, Thomas Graf, Núria López‐Bigas, Tokameh Mahmoudi, Maribel Parra
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0136314

Nucleosome Organization in Human Embryonic Stem Cells
Cited by: 22
Author(s): Puya G. Yazdi, Brian Pedersen, Jared F. Taylor, Omar Khattab, Yuhan Chen, Steven E. Jacobsen, Ping H. Wang
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0055489

Oncodrive-CIS: A Method to Reveal Likely Driver Genes Based on the Impact of Their Copy Number Changes on Expression
Cited by: 28
Author(s): David Tamborero, Núria López‐Bigas
Software Mentions: 3
Published: almost 12 years ago

10.7554/eLife.66143

The EMT transcription factor Snai1 maintains myocardial wall integrity by repressing intermediate filament gene expression
Cited by: 8
Author(s): Alessandra Gentile, Anabela Bensimon-Brito, Rashmi Priya, Hans-Martin Maischein, Janett Piesker, Stefan Guenther, Felix Gunawan, Didier Y.R. Stainier
Software Mentions: 3
Published: over 3 years ago

10.1186/s13059-016-1090-1

Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
Cited by: 119
Author(s): Federico Abascal, André Corvelo, Fernando Cruz, José Luis Villanueva‐Cañas, Anna Vlasova, Marina Marcet‐Houben, Begoña Martínez‐Cruz, Jade Yu Cheng, Pablo Prieto, Vı́ctor Quesada, Javier Quilez, Gang Li, Francisca García, Miriam Rubio-Camarillo, Leonor Frías, Paolo Ribeca, Salvador Capella-Gutiérrez, José Manuel Vázquez Rodríguez, Francisco Câmara, Ernesto Lowy, Luca Cozzuto, Ionas Erb, Michael L. Tress, José Manuel Rodriguez, Jorge Ruiz-Orera, Ferrán Reverter, Mireia Casas-Marcé, Laura García-España Soriano, Javier R. Arango, Sophia Derdak, Beatriz Galán, Julie Blanc, Marta Gut, Belén Lorente-Galdós, Marta Andrés-Nieto, Carlos López‐Otín, Alfonso Valencia, Ivo Gut, José Luis Garcı́a, Roderic Guigó, William J. Murphy, Aurora Ruiz‐Herrera, Tomàs Marquès-Bonet, Guglielmo Roma, Cédric Notredame, Thomas Mailund, Mar Albà, Toni Gabaldón, Tyler Alioto, José A. Godoy
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0038347

Inhibition of Specific NF-κB Activity Contributes to the Tumor Suppressor Function of 14-3-3σ in Breast Cancer
Cited by: 25
Author(s): Julia Inglés‐Esteve, M.L González Morales, Alba Dalmases, Ricard Garcia-Carbonell, Alba Jené-Sanz, Núria López‐Bigas, Mar Iglesias, Cristina Ruiz-Herguido, Ana Rovira, Federico Rojo, Joan Albanell, Roger R. Gomis, Anna Bigas, Lluís Espinosa
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pcbi.1005708

Analysis of the relationship between coexpression domains and chromatin 3D organization
Cited by: 46
Author(s): María E. Soler-Oliva, José A. Guerrero-Martínez, Valentina Bachetti, José Carlos Castañeda Reyes
Software Mentions: 3
Published: about 7 years ago

10.1186/s12859-016-1430-x

GenomeCAT: a versatile tool for the analysis and integrative visualization of DNA copy number variants
Cited by: 6
Author(s): Katrin Tebel, Vivien Boldt, Anne Steininger, Matthias Port, Grit Ebert, Reinhard Ullmann
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12864-015-2145-5

Transcriptomic characterization of the dorsal lobes after hepatectomy of the ventral lobe in zebrafish
Cited by: 7
Author(s): Guohui Feng, Yong Long, Jinrong Peng, Qing Li
Software Mentions: 2
Published: about 9 years ago

10.1186/1755-8794-7-45

Functional characterization of breast cancer using pathway profiles
Cited by: 10
Author(s): Feng Tian, Yajie Wang, Michael Seiler, Zhenjun Hu
Software Mentions: 2
Published: over 10 years ago

10.1093/bib/bbaa217

Analysis, identification and visualization of subgroups in genomics
Cited by: 4
Author(s): Gunnar Völkel, Simon Laban, Axel Fürstberger, Silke D. Kühlwein, Nensi Ikonomi, Thomas K Hoffman, Cornelia Brunner, Donna Neuberg, Verena I. Gaidzik, Hartmut Döhner, Johann M. Kraus, Hans A. Kestler
Software Mentions: 2
Published: about 4 years ago

10.7717/peerj-cs.155

ClusterEnG: an interactive educational web resource for clustering and visualizing high-dimensional data
Cited by: 8
Author(s): Mohith Manjunath, Yi Zhang, Yeonsung Kim, Steve Yeo, Omar N Sobh, Nathan Russell, Christian Followell, Colleen Bushell, Umberto Ravaioli, Jun S. Song
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0037209

Transcriptomic Characterization of Temperature Stress Responses in Larval Zebrafish
Cited by: 149
Author(s): Yong Long, Linchun Li, Qing Li, Xiaozhen He
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0024023

Co-Regulation of Histone-Modifying Enzymes in Cancer
Cited by: 14
Author(s): Abul B.M.M.K. Islam, William F. Richter, Laura A. Jacobs, Núria López‐Bigas, Elizaveta V. Benevolenskaya
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0019541

Gitools: Analysis and Visualisation of Genomic Data Using Interactive Heat-Maps
Cited by: 232
Author(s): Christian Perez-Llamas, Núria López‐Bigas
Software Mentions: 2
Published: over 13 years ago

10.1155/2017/9426280

Construction of an miRNA-Regulated Pathway Network Reveals Candidate Biomarkers for Postmenopausal Osteoporosis
Cited by: 13
Author(s): Min Shao
Software Mentions: 2
Published: almost 8 years ago

10.3389/fcimb.2018.00173

Cascade Ligand- and Structure-Based Virtual Screening to Identify New Trypanocidal Compounds Inhibiting Putrescine Uptake
Cited by: 16
Author(s): Lucas Nicolás Alberca, María Laura Sbaraglini, Juan Francisco Morales, Roque Carlos Dietrich, María Daniela Ruiz, Agustina María Pino Martínez, Cristian Gabriel Miranda, Laura Virginia Fraccaroli, Catalina Dirney Alba Soto, Carolina Carrillo, Pablo Hernán Palestro, Alan Talevi
Software Mentions: 2
Published: over 6 years ago

10.3389/fchem.2019.00534

In silico Guided Drug Repurposing: Discovery of New Competitive and Non-competitive Inhibitors of Falcipain-2
Cited by: 22
Author(s): Lucas Nicolás Alberca, Sara Chuguransky, Cecilia Álvarez, Alan Talevi, Emir Salas‐Sarduy
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.00765

Epigenetic Regulator miRNA Pattern Differences Among SARS-CoV, SARS-CoV-2, and SARS-CoV-2 World-Wide Isolates Delineated the Mystery Behind the Epic Pathogenicity and Distinct Clinical Characteristics of Pandemic COVID-19
Cited by: 129
Author(s): A. A. Khan, Md. Rabi Us Sany, Abul B.M.M.K. Islam, Abul B.M.M.K. Islam
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2018.02397

Transcriptomic Analysis of Shiga Toxin-Producing Escherichia coli FORC_035 Reveals the Essential Role of Iron Acquisition for Survival in Canola Sprouts and Water Dropwort
Cited by: 0
Author(s): Hongjun Na, Yeonkyung Kim, Dajeong Kim, Hyunjin Yoon, Sangryeol Ryu
Software Mentions: 2
Published: about 6 years ago

10.1186/gb-2013-14-9-r106

The mutational landscape of chromatin regulatory factors across 4,623 tumor samples
Cited by: 96
Author(s): Abel González-Pérez, Alba Jené-Sanz, Núria López‐Bigas
Software Mentions: 2
Published: almost 12 years ago

10.1186/gm327

Sample-level enrichment analysis unravels shared stress phenotypes among multiple cancer types
Cited by: 45
Author(s): Gunes Gundem, Núria López‐Bigas
Software Mentions: 2
Published: almost 13 years ago

10.1093/jxb/erx111

Genome-wide changes in microRNA expression during short and prolonged heat stress and recovery in contrasting rice cultivars
Cited by: 106
Author(s): Satendra K. Mangrauthia, Sailaja Bhogireddy, Shubhi Agarwal, V. Vishnu Prasanth, S. R. Voleti, Sarla Neelamraju, D. Subrahmanyam
Software Mentions: 2
Published: over 7 years ago

10.1186/s12931-014-0111-4

Network medicine analysis of COPD multimorbidities
Cited by: 47
Author(s): Solène Grosdidier, Antoni Ferrer, Rosa Faner, Janet Piñero, Josep Roca, Borja G. Cosío, Àlvar Agustí, Joaquim Gea, Ferrán Sanz, Laura I. Furlong
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-017-09182-5

Inflammatory cytokine-induced changes in neural network activity measured by waveform analysis of high-content calcium imaging in murine cortical neurons
Cited by: 29
Author(s): Benjamin D. Clarkson, Robert J. Kahoud, Christina B. McCarthy, Charles L. Howe
Software Mentions: 2
Published: over 7 years ago

10.1128/mSystems.00650-19

Horizontally Acquired Quorum-Sensing Regulators Recruited by the PhoP Regulatory Network Expand the Host Adaptation Repertoire in the Phytopathogen <i>Pectobacterium brasiliense</i>
Cited by: 10
Author(s): Daniel Bellieny-Rabelo, Ntombikayise Precious Nkomo, Divine Yufetar Shyntum, Lucy N. Moleleki
Software Mentions: 2
Published: almost 5 years ago

10.1186/s40246-020-00285-1

Aberration of the modulatory functions of intronic microRNA hsa-miR-933 on its host gene ATF2 results in type II diabetes mellitus and neurodegenerative disease development
Cited by: 5
Author(s): Abul B.M.M.K. Islam, Eusra Mohammad, A. A. Khan
Software Mentions: 2
Published: about 4 years ago

10.1038/onc.2017.176

A DNA methylation map of human cancer at single base-pair resolution
Cited by: 71
Author(s): Enrique Vidal, Sergi Sayols, Sebastian Morán, Amy Guillaumet-Adkins, M. Schroêder, Romina Royo, Modesto Orozco, Marta Gut, Núria López‐Bigas, Holger Heyn, Manel Esteller
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.25605

Reciprocal analyses in zebrafish and medaka reveal that harnessing the immune response promotes cardiac regeneration
Cited by: 196
Author(s): Shih Lei Lai, Rubén Marín-Juez, Pedro Luís Moura, Carsten Kuenne, Jason Kuan Han Lai, Ayele Taddese Tsedeke, Stefan Guenther, Mario Looso, Didier Y. R. Stainier
Software Mentions: 2
Published: over 7 years ago

10.2196/10297

Exploring Genetic Data Across Individuals: Design and Evaluation of a Novel Comparative Report Tool
Cited by: 6
Author(s): Lauren Westendorf, Orit Shaer, Christina Pollalis, Clarissa Verish, Oded Nov, Mad Price Ball
Software Mentions: 2
Published: about 6 years ago

10.1186/s12974-017-1015-2

Neuronal CCL2 expression drives inflammatory monocyte infiltration into the brain during acute virus infection
Cited by: 40
Author(s): Charles L. Howe, Reghann G. LaFrance‐Corey, Emma Goddery, Renee K. Johnson, Kanish Mirchia
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12974-015-0403-8

NFκB signaling drives pro-granulocytic astroglial responses to neuromyelitis optica patient IgG
Cited by: 26
Author(s): Margaret E. Walker-Caulfield, Yuxin Guo, Renee K. Johnson, Christina B. McCarthy, Patrick D. Fitz‐Gibbon, Claudia F. Lucchinetti, Charles L. Howe
Software Mentions: 2
Published: about 9 years ago

10.18632/oncotarget.12238

Clonal and microclonal mutational heterogeneity in high hyperdiploid acute lymphoblastic leukemia
Cited by: 10
Author(s): Adam J. de Smith, Juhi Ojha, Stephen Francis, Erica Sanders, Alyson Endicott, Helen M. Hansen, Иван Смирнов, Amanda Termuhlen, Kyle M. Walsh, Catherine Metayer, Joseph L. Wiemels
Software Mentions: 2
Published: about 8 years ago

10.1186/s13073-015-0260-1

Circuits of cancer drivers revealed by convergent misregulation of transcription factor targets across tumor types
Cited by: 10
Author(s): Abel González-Pérez
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.gpb.2014.09.005

Genomic, Lipidomic and Metabolomic Analysis of Cyclooxygenase-null Cells: Eicosanoid Storm, Cross Talk, and Compensation by COX-1
Cited by: 13
Author(s): Abul B.M.M.K. Islam, Mandar Dave, Sonia Nishat Amin, Roderick V. Jensen, Ashok R. Amin
Software Mentions: 1
Published: over 8 years ago

10.1016/j.gpb.2017.03.005

Proteomic Analysis Shows Constitutive Secretion of MIF and p53-associated Activity of COX-2 −/− Lung Fibroblasts
Cited by: 4
Author(s): Mandar Dave, Abul B.M.M.K. Islam, Roderick V. Jensen, Agueda Rostagno, Jorge Ghiso, Ashok R. Amin
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0143308

Identifying Triple-Negative Breast Cancer Using Background Parenchymal Enhancement Heterogeneity on Dynamic Contrast-Enhanced MRI: A Pilot Radiomics Study
Cited by: 109
Author(s): Jeff Wang, Fumiki Kato, Noriko Oyama‐Manabe, Ruijiang Li, Yi Cui, Khin Khin Tha, Hiroko Yamashita, Kohsuke Kudo, Hiroki Shirato
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.26566

Serum amyloid A predisposes inflammatory tumor microenvironment in triple negative breast cancer
Cited by: 26
Author(s): Rosa Mistica C. Ignacio, Carla Gibbs, Soohyun Kim, Eun-Sook Lee, Samuel E. Adunyah, Deok‐Soo Son
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1005848

Molecular Basis of Acute Cystitis Reveals Susceptibility Genes and Immunotherapeutic Targets
Cited by: 40
Author(s): Inès Ambite, Manoj Puthia, K. Nagy, Caterina Cafaro, Aftab Nadeem, Daniel Butler, Gustav Rydström, Nina A. Filenko, Björn Wullt, Thomas Miethke, Catharina Svanborg
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.ppat.1007671

Fimbriae reprogram host gene expression – Divergent effects of P and type 1 fimbriae
Cited by: 16
Author(s): Inès Ambite, Daniel Butler, Christoph Stork, Jenny Grönberg-Hernández, Béla Köves, Jaroslaw Zdziarski, Jerome S. Pinkner, Scott J. Hultgren, Ulrich Dobrindt, Björn Wullt, Catharina Svanborg
Software Mentions: 1
Published: over 5 years ago

10.1016/j.oraloncology.2017.08.003

Genomic characterization of tobacco/nut chewing HPV-negative early stage tongue tumors identify MMP10 as a candidate to predict metastases
Cited by: 31
Author(s): Pawan Upadhyay, Nilesh Gardi, Sanket Desai, Pratik Chandrani, Asim Joshi, Bhaskar Dharavath, Priyanca Arora, Munita Bal, Sudhir Nair, Amit Dutt
Software Mentions: 1
Published: about 7 years ago

10.1038/srep44827

Enzyme IIANtr Regulates Salmonella Invasion Via 1,2-Propanediol And Propionate Catabolism
Cited by: 19
Author(s): Woongjae Yoo, Dajeong Kim, Hyunjin Yoon, Sangryeol Ryu
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-021-02828-7

Elucidation of molecular and hormonal background of early growth cessation and endodormancy induction in two contrasting Populus hybrid cultivars
Cited by: 1
Author(s): Ákos Boldizsár, Alexandra Soltész, Karen Tanino, Balázs Kalapos, Zsuzsa Marozsán-Tóth, István Monostori, Petre I. Dobrev, Radomı́ra Vaňková, Gábor Galiba
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-11314-w

A strategy for the identification of patterns in the biosynthesis of nonribosomal peptides by Betaproteobacteria species
Cited by: 0
Author(s): João L. Baldim, Bruna Lidiane da Silva, Daniela Aparecida Chagas‐Paula, João Henrique G. Lago, Marisi G. Soares
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-28634-0

Neuroepithelial control of mucosal inflammation in acute cystitis
Cited by: 18
Author(s): Daniel Butler, Inès Ambite, K. Nagy, Caterina Cafaro, Abdulla Ahmed, Aftab Nadeem, Nina A. Filenko, Thi Hong Tran, Karl Erik Andersson, Björn Wullt, Manoj Puthia, Catharina Svanborg
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0005330

Identification of three immunodominant motifs with atypical isotype profile scattered over the Onchocerca volvulus proteome
Cited by: 26
Author(s): Ole Lagatie, Bieke Van Dorst, Lieven Stuyver
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0070531

High-Resolution Transcriptomic Analyses of Sinorhizobium sp. NGR234 Bacteroids in Determinate Nodules of Vigna unguiculata and Indeterminate Nodules of Leucaena leucocephala
Cited by: 57
Author(s): Yan Li, Chang Fu Tian, Wen Feng Chen, Lei Wang, Xin Sui, Wen Xin Chen
Software Mentions: 1
Published: over 11 years ago

10.1038/s41419-020-2640-8

Oncogene PRR14 promotes breast cancer through activation of PI3K signal pathway and inhibition of CHEK2 pathway
Cited by: 8
Author(s): Xiaolei Ren, M. Louisa Long, Zhihong Li, Boda Wu, Tao Jin, Chao Tu, Lin Qi, Mei Yang
Software Mentions: 1
Published: over 4 years ago

10.3390/cells8050383

Bioavailable Menthol (Transient Receptor Potential Melastatin-8 Agonist) Induces Energy Expending Phenotype in Differentiating Adipocytes
Cited by: 16
Author(s): Pragyanshu Khare, Aakriti Chauhan, Vikas Kumar, Jasleen Kaur, Neha Mahajan, Vijay Kumar, Adam Gesing, Kanwaljit Chopra, Kanthi Kiran Kondepudi, Mahendra Bishnoi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1004493

An Intronic microRNA Links Rb/E2F and EGFR Signaling
Cited by: 19
Author(s): Mary Truscott, Abul B.M.M.K. Islam, James W. Lightfoot, Núria López‐Bigas, Maxim V. Frolov
Software Mentions: 1
Published: over 10 years ago

10.1016/j.euros.2021.07.003

Immunomodulation—A Molecular Solution to Treating Patients with Severe Bladder Pain Syndrome?
Cited by: 5
Author(s): Björn Wullt, Daniel Butler, Inès Ambite, Julia Kinsolving, Christian Krintel, Catharina Svanborg
Software Mentions: 1
Published: about 3 years ago

10.12688/f1000research.4492.2

Cytoscape: the network visualization tool for GenomeSpace workflows
Cited by: 146
Author(s): Barry Demchak, Tim Hull, Michael Reich, Ted Liefeld, Michael Smoot, Trey Ideker, Jill P. Mesirov
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-021-94678-4

Genomic alterations and possible druggable mutations in carcinoma of unknown primary (CUP)
Cited by: 2
Author(s): Hamidreza Aboulkheyr Es, Hamid Moghaddasi, Amir Abbas Hedayati Asl, Mehdi Totonchi
Software Mentions: 1
Published: over 3 years ago

10.18632/oncotarget.8752

Altered oncomodules underlie chromatin regulatory factors driver mutations
Cited by: 3
Author(s): Joan Frigola, Ane Iturbide, Núria López‐Bigas, Sandra Peiró
Software Mentions: 1
Published: over 8 years ago

10.1155/2017/3789856

The Correlation between Chemical Structures and Antioxidant, Prooxidant, and Antitrypanosomatid Properties of Flavonoids
Cited by: 41
Author(s): João L. Baldim, Bianca Gonçalves Vasconcelos de Alcântara, Olívia da Silva Domingos, Marisi G. Soares, Ivo Santana Caldas, Rômulo Dias Novaes, Tiago Branquinho Oliveira, João Henrique G. Lago, Daniela Aparecida Chagas‐Paula
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2021.645860

Fresh Crab Plays an Important Role as a Nutrient Reservoir for the Rapid Propagation of Vibrio vulnificus
Cited by: 1
Author(s): Su Yeon Kim, Han Young Chung, Joon-Gi Kwon, Sang Ho Choi, Ju-Hoon Lee
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2018.01504

Potential Survival and Pathogenesis of a Novel Strain, Vibrio parahaemolyticus FORC_022, Isolated From a Soy Sauce Marinated Crab by Genome and Transcriptome Analyses
Cited by: 4
Author(s): Han Young Chung, Byung-Ho Lee, Eun J. Na, Kyu‐Ho Lee, Sangryeol Ryu, Hyunjin Yoon, Ju-Hoon Lee, Hyeun B. Kim, Heebal Kim, Hee Gon Jeong, Bongsoo Kim, Sang Ho Choi
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.14551

A short-term intervention with selenium affects expression of genes implicated in the epithelial-to-mesenchymal transition in the prostate
Cited by: 19
Author(s): Dieuwertje E. Kok, Lambertus A. Kiemeney, Gerald W. Verhaegh, Jack A. Schalken, Emile N.J.T. van Lin, J.P. Michiel Sedelaar, J. Alfred Witjes, C.A. Hulsbergen van de Kaa, P. van ’t Veer, Ellen Kampman, Lydia A. Afman
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0114491

Molecular Characterization of an Intact p53 Pathway Subtype in High-Grade Serous Ovarian Cancer
Cited by: 17
Author(s): Takahide Hayano, Yuki Yokota, Kazuyoshi Hosomichi, Hirofumi Nakaoka, Kosuke Yoshihara, Sosuke Adachi, Katsunori Kashima, Hitoshi Tsuda, Takuya Moriya, Kenichi Tanaka, Takayuki Enomoto, Ituro Inoue
Software Mentions: 1
Published: almost 10 years ago

10.3389/fpls.2017.02033

Effect of the Winter Wheat Cheyenne 5A Substituted Chromosome on Dynamics of Abscisic Acid and Cytokinins in Freezing-Sensitive Chinese Spring Genetic Background
Cited by: 9
Author(s): Balázs Kalapos, Alíz Novák, Petre I. Dobrev, Pavel Vítámvás, Ferenc Marincs, Gábor Galiba, Radomı́ra Vaňková
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2016.00664

Metabolite Profiling of Italian Tomato Landraces with Different Fruit Types
Cited by: 56
Author(s): С. Н. Балдина, Maurizio Enea Picarella, Antonio Dario Troise, Anna Pucci, Valentino Ruggieri, Rosalia Ferracane, Amalia Barone, Vincenzo Fogliano, Andrea Mazzucato
Software Mentions: 1
Published: over 8 years ago

10.1186/s13100-017-0097-9

Globular domain structure and function of restriction-like-endonuclease LINEs: similarities to eukaryotic splicing factor Prp8
Cited by: 4
Author(s): M. Mahbub, Saiful M. Chowdhury, Shawn M. Christensen
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0164189

NF-κB-Mediated CCL20 Reigns Dominantly in CXCR2-Driven Ovarian Cancer Progression
Cited by: 24
Author(s): Rosa Mistica C. Ignacio, Syeda M. Kabir, Eun-Sook Lee, Samuel E. Adunyah, Deok‐Soo Son
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.25389

The TGFα-EGFR-Akt signaling axis plays a role in enhancing proinflammatory chemokines in triple-negative breast cancer cells
Cited by: 13
Author(s): Rosa Mistica C. Ignacio, Carla Gibbs, Eun-Sook Lee, Deok‐Soo Son
Software Mentions: 1
Published: over 6 years ago