bioconductor: Heatplus | Projects

10.3390/v12101142

A Diverse Virome of Leafroll-Infected Grapevine Unveiled by dsRNA Sequencing
Cited by: 24
Author(s): Mamadou L. Fall, De-Xiang Xu, Pierre Lemoyne, Issam Moussa, Carole Beaulieu, Odile Carisse
Software Mentions: 19
Published: about 4 years ago

10.1186/1756-0500-3-10

A collection of bioconductor methods to visualize gene-list annotations
Cited by: 46
Author(s): Gang Feng, Pan Du, Nancy L. Krett, Michael A. Tessel, Steven T. Rosen, Warren A. Kibbe, Simon Lin
Software Mentions: 11
Published: almost 15 years ago

10.7717/peerj.3795

Multivariate ordination identifies vegetation types associated with spider conservation in brassica crops
Cited by: 4
Author(s): Hafiz Sohaib Ahmed Saqib, Minsheng You, Geoff M. Gurr
Software Mentions: 9
Published: about 7 years ago

10.3389/fmicb.2020.610269

Zebra Mussel Holobionts Fix and Recycle Nitrogen in Lagoon Sediments
Cited by: 15
Author(s): Ugo Marzocchi, Stefano Bonaglia, Anastasija Zaiko, Grazia Marina Quero, Irma Vybernaite‐Lubiene, Tobia Politi, Aurelija Samuilovienė, Mindaugas Žilius, Marco Bartoli, Ulisse Cardini
Software Mentions: 8
Published: almost 4 years ago

10.1038/s41598-018-29373-y

Experimentally induced metamorphosis in highly regenerative axolotl (ambystoma mexicanum) under constant diet restructures microbiota
Cited by: 25
Author(s): Turan Demircan, Guvanch Ovezmyradov, Berna Yıldırım, İlknur Keskin, Ayşe Elif İlhan, Ece Cana Fesçioğlu, Gürkan Öztürk, Süleyman Yıldırım
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-020-74282-8

Monitoring elasmobranch assemblages in a data-poor country from the Eastern Tropical Pacific using baited remote underwater video stations
Cited by: 13
Author(s): Mario Espinoza, Tatiana Araya‐Arce, Isaac Chaves-Zamora, Isaac Chinchilla, Marta Cambra
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0233943

Effects of parity, blood progesterone, and non-steroidal anti-inflammatory treatment on the dynamics of the uterine microbiota of healthy postpartum dairy cows
Cited by: 17
Author(s): Osvaldo Bogado Pascottini, J. F. W. Sprícigo, Sabrina J. Van Schyndel, B. Mion, Joyce D. Rousseau, J. Scott Weese, S.J. LeBlanc
Software Mentions: 7
Published: almost 4 years ago

10.3389/fmicb.2018.02528

Bacterial Diversity and the Geochemical Landscape in the Southwestern Gulf of Mexico
Cited by: 32
Author(s): Elizabeth Ernestina Godoy-Lozano, Alejandra Escobar‐Zepeda, Luciana Raggi, Enrique Merino, Rosa Marı́a Gutiérrez-Rı́os, Katy Juarez, Lorenzo Segovia, Alexei F. Licea-Navarro, Adolfo Gracía, Alejandro Sánchez-Flores, Liliana Pardo-López
Software Mentions: 7
Published: about 6 years ago

10.1038/srep39527

Synergetic effects of DNA methylation and histone modification during mouse induced pluripotent stem cell generation
Cited by: 13
Author(s): Guiying Wang, Rong Weng, Yuanyuan Lan, Xudong Guo, Qidong Liu, Xiaoqin Liu, Chenqi Lu, Jiuhong Kang
Software Mentions: 7
Published: almost 8 years ago

10.7717/peerj.9697

Phytotoxin synthesis genes and type III effector genes of Pseudomonas syringae pv. actinidiae biovar 6 are regulated by culture conditions
Cited by: 2
Author(s): Karin Hirose, Yasuhiro Ishiga, Takashi Fujikawa
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-021-85256-9

Creation and validation of models to predict response to primary treatment in serous ovarian cancer
Cited by: 11
Author(s): Jesús González Bosquet, Eric J. Devor, A.M. Newtson, Brian J. Smith, David Bender, Michael J. Goodheart, Megan McDonald, Terry A. Braun, Kristina W. Thiel, Kimberly K. Leslie
Software Mentions: 6
Published: almost 4 years ago

10.1038/srep37387

The stable microbiome of inter and sub-tidal anemone species under increasing pCO2
Cited by: 13
Author(s): Erinn M. Muller, Maoz Fine, Kim B. Ritchie
Software Mentions: 6
Published: about 8 years ago

10.1186/1471-2105-13-S16-S10

A tutorial in displaying mass spectrometry-based proteomic data using heat maps
Cited by: 47
Author(s): Melissa Key
Software Mentions: 6
Published: about 12 years ago

10.1186/s12866-021-02099-0

The regional diversity of gut microbiome along the GI tract of male C57BL/6 mice
Cited by: 41
Author(s): Enkhchimeg Lkhagva, Hea-Jong Chung, Jinny Hong, W.H. Wilson Tang, Lee S, Seong‐Tshool Hong, Seungkoo Lee
Software Mentions: 5
Published: almost 4 years ago

10.7717/peerj.5444

Darwin’s naturalization hypothesis does not explain the spread of nonnative weed species naturalized in México
Cited by: 0
Author(s): Judith Sánchez-Blanco, Ernesto V. Vega-Peña, Francisco J. Espinosa‐García
Software Mentions: 5
Published: over 6 years ago

10.1186/s40168-021-01105-x

Dynamics of dark fermentation microbial communities in the light of lactate and butyrate production
Cited by: 35
Author(s): Anna Detman, Daniel Laubitz, Aleksandra Chojnacka, Pawel R. Kiela, Agnieszka Salamon, Albert Barberán, Yongjian Chen, Fei Yang, Mieczysław Błaszczyk, Anna Sikora
Software Mentions: 5
Published: over 3 years ago

10.3390/microorganisms8010001

Fungal and Bacterial Communities Exhibit Consistent Responses to Reversal of Soil Acidification and Phosphorus Limitation over Time
Cited by: 9
Author(s): Sarah R. Carrino‐Kyker, Kaitlin P. Coyle, Laurel A. Kluber, David Burke
Software Mentions: 5
Published: about 5 years ago

10.1038/srep21557

Metabolic/Proteomic Signature Defines Two Glioblastoma Subtypes With Different Clinical Outcome
Cited by: 73
Author(s): Giovanna Marziali, Michele Signore, Mariachiara Buccarelli, Sveva Grande, Alessandra Palma, Mauro Biffoni, Antonella Rosi, Quintino Giorgio D’Alessandris, Maurizio Martini, Luigi Maria Larocca, Ruggero De Maria, Roberto Pallini, Lucia Ricci‐Vitiani
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pone.0227860

Fungal diversity in canopy soil of silver beech, Nothofagus menziesii (Nothofagaceae)
Cited by: 4
Author(s): Andy R. Nilsen, Suliana Teasdale, P. L. Guy, Tina C. Summerfield, David A. Orlovich
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmicb.2017.00101

Freshwater Recirculating Aquaculture System Operations Drive Biofilter Bacterial Community Shifts around a Stable Nitrifying Consortium of Ammonia-Oxidizing Archaea and Comammox Nitrospira
Cited by: 163
Author(s): Ryan P. Bartelme, Sandra L. McLellan, Ryan J. Newton
Software Mentions: 5
Published: almost 8 years ago

10.3390/microorganisms8081115

Distribution and Control of Bacterial Community Composition in Marian Cove Surface Waters, King George Island, Antarctica during the Summer of 2018
Cited by: 8
Author(s): Soyeon Kim, Ju-Hyoung Kim, Jae-Hyun Lim, Jong-Gil Jeong, Jang-Mu Heo, Il-Nam Kim
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-020-71864-4

Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing
Cited by: 25
Author(s): Katherine Chacón-Vargas, Julian Torres, Martha Gilés-Gómez, Adelfo Escalante, John G. Gibbons
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0004481

Age and Diet Affect Gene Expression Profile in Canine Skeletal Muscle
Cited by: 17
Author(s): Ingmar S. Middelbos, Brittany M. Vester, Lisa K. Karr-Lilienthal, Lawrence B. Schook, Kelly S. Swanson
Software Mentions: 5
Published: almost 16 years ago

10.1038/s41598-020-69317-z

Dynamics of uterine microbiota in postpartum dairy cows with clinical or subclinical endometritis
Cited by: 46
Author(s): Osvaldo Bogado Pascottini, Sabrina J. Van Schyndel, J. F. W. Sprícigo, Joyce D. Rousseau, J. Scott Weese, S.J. LeBlanc
Software Mentions: 5
Published: over 4 years ago

10.1186/1741-7007-8-26

Molecular evidence for increased regulatory conservation during metamorphosis, and against deleterious cascading effects of hybrid breakdown in Drosophila
Cited by: 22
Author(s): Carlo G. Artieri, Rama S. Singh
Software Mentions: 5
Published: over 14 years ago

10.3390/microorganisms9071378

Effects of Wine and Its Microbial-Derived Metabolites on Intestinal Permeability Using Simulated Gastrointestinal Digestion/Colonic Fermentation and Caco-2 Intestinal Cell Models
Cited by: 11
Author(s): Irene Zorraquín‐Peña, Diego Taladrid, Alba Tamargo, Mariana Silva, Natalia Molinero, Dolores González de Llano, Begoňa Bartolomé, M. Victoria Moreno‐Arribas
Software Mentions: 4
Published: over 3 years ago

10.1186/1471-2164-15-1179

The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis
Cited by: 34
Author(s): Kate J. Howell, Lucy A. Weinert, Roy R. Chaudhuri, Shi-Lu Luan, Sarah Peters, Jukka Corander, David Harris, Øystein Angen, Virginia Aragón, Albert Bensaid, Susanna Williamson, Julian Parkhill, Paul R. Langford, Andrew N. Rycroft, Brendan W. Wren, Matthew T. G. Holden, Alexander W. Tucker, Duncan J. Maskell
Software Mentions: 4
Published: almost 11 years ago

10.1186/1471-2164-14-583

Genome-wide gene expression profiling of stress response in a spinal cord clip compression injury model
Cited by: 50
Author(s): Mahmood Chamankhah, Eftekhar Eftekharpour, Soheila Karimi-Abdolrezaee, Paul C. Boutros, Serban San‐Marina, Michael G. Fehlings
Software Mentions: 4
Published: over 11 years ago

10.1186/1752-0509-7-58

Reaction-contingency based bipartite Boolean modelling
Cited by: 14
Author(s): Max Flöttmann, Falko Krause, Edda Klipp, Marcus Krantz
Software Mentions: 4
Published: almost 12 years ago

10.1186/s13058-017-0920-8

Establishing and characterizing patient-derived xenografts using pre-chemotherapy percutaneous biopsy and post-chemotherapy surgical samples from a prospective neoadjuvant breast cancer study
Cited by: 53
Author(s): Jia Yu, Bo Qin, Ann M. Moyer, Jason P. Sinnwell, Kevin J. Thompson, John A. Copland, Laura A. Marlow, James L. Miller, Ping Yin, Bowen Gao, Katherine Minter-Dykhouse, Xiaojia Tang, Sarah A. McLaughlin, Alvaro Moreno-Aspitia, Anthony Schweitzer, Yan Lü, J. C. Hubbard, Donald W. Northfelt, Richard Gray, Katie N. Hunt, Amy Lynn Conners, Vera J. Suman, Krishna R. Kalari, James N. Ingle, Zhenkun Lou, Daniel W. Visscher, Richard M. Weinshilboum, Judy C. Boughey, Matthew P. Goetz, Liewei Wang
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2021.679409

Zetaproteobacteria Pan-Genome Reveals Candidate Gene Cluster for Twisted Stalk Biosynthesis and Export
Cited by: 5
Author(s): Elif Koeksoy, Oliver Bezuidt, Timm Bayer, Clara S. Chan, David Emerson
Software Mentions: 4
Published: over 3 years ago

10.1242/jcs.181248

Nuclear PKC-θ facilitates rapid transcriptional responses in human memory CD4+ T cells via p65 and H2B phosphorylation
Cited by: 11
Author(s): Jasmine Li, Kristine Hardy, Chansavath Phetsouphanh, Wen Juan Tu, Elissa L Sutcliffe, Robert McCuaig, Christopher R Sutton, Anjum Zafar, C. Mee Ling Munier, John Zaunders, Xu Yin, Angelo Theodoratos, Abel Tan, Pek Siew Lim, Tobias Knaute, Antonia Masch, Johannes Zerweck, Vedran Brezar, Peter J. Milburn, Jenny C. Dunn, Marco G. Casarotto, Stephen J. Turner, Nabila Seddiki, Anthony D. Kelleher, Sudha Rao
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-018-34858-x

SEPROGADIC – serum protein-based gastric cancer prediction model for prognosis and selection of proper adjuvant therapy
Cited by: 7
Author(s): Hee-Sung Ahn, Tae Sung Sohn, Mi Jeong Kim, Byoung-Kyu Cho, Su Mi Kim, Seung Tae Kim, Eugene C. Yi, Cheolju Lee
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-61569-z

Microbial community structure and functional properties in permanently and seasonally flooded areas in Poyang Lake
Cited by: 11
Author(s): Yang Liu, Ze Ren, Xiaodong Qu, Min Zhang, Yang Yu, Yuhang Zhang, Wenqi Peng
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-68136-6

Effects of substratum and depth on benthic harmful dinoflagellate assemblages
Cited by: 13
Author(s): Li Keat Lee, Zhen Fei Lim, Haifeng Gu, Leo Lai Chan, R. Wayne Litaker, Patricia A. Tester, Chui Pin Leaw, Po Teen Lim
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-020-71888-w

Local management and landscape structure determine the assemblage patterns of spiders in vegetable fields
Cited by: 11
Author(s): Hafiz Sohaib Ahmed Saqib, Junhui Chen, Wei Chen, Gábor Pozsgai, Komivi Senyo Akutse, Muhammad Furqan Ashraf, Minsheng You, Geoff M. Gurr
Software Mentions: 4
Published: over 4 years ago

10.3390/ijms19061559

Distinct DNA Methylation Profiles in Ovarian Tumors: Opportunities for Novel Biomarkers
Cited by: 23
Author(s): Lorena Losi, Sergio Fonda, Sara Saponaro, Sonia T. Chelbi, Cesare Lancellotti, Gaia Gozzi, Loredana Alberti, Luca Fabbiani, Laura Botticelli, Jean Benhattar
Software Mentions: 4
Published: over 6 years ago

10.3390/nu13072467

Gastrointestinal Digestion of a Grape Pomace Extract: Impact on Intestinal Barrier Permeability and Interaction with Gut Microbiome
Cited by: 11
Author(s): Diego Taladrid, Dolores González de Llano, Irene Zorraquín‐Peña, Alba Tamargo, Mariana Silva, Natalia Molinero, M. Victoria Moreno‐Arribas, Begoňa Bartolomé
Software Mentions: 4
Published: over 3 years ago

10.1186/s40168-019-0753-z

The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study
Cited by: 20
Author(s): Josef Wagner, Ewan M. Harrison, Marcos Martinez Del Pero, Beth Blane, Gert Mayer, Johannes Leierer, Seerapani Gopaluni, Mark A. Holmes, Julian Parkhill, Sharon J. Peacock, David Jayne, Andreas Kronbichler
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2020.612344

Dynamics and Complexity of Dark Fermentation Microbial Communities Producing Hydrogen From Sugar Beet Molasses in Continuously Operating Packed Bed Reactors
Cited by: 16
Author(s): Anna Detman, Daniel Laubitz, Aleksandra Chojnacka, Ewa Wiktorowska-Sowa, Jan Piotrowski, Agnieszka Salamon, Wiktor Kaźmierczak, Mieczysław Błaszczyk, Albert Barberán, Yongjian Chen, Ewa Łupikasza, Fei Yang, Anna Sikora
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0065894

Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key
Cited by: 121
Author(s): V. Joachim Haupt, Simone Daminelli, Michael Schroeder
Software Mentions: 3
Published: over 11 years ago

10.3389/fmicb.2021.653399

Respiratory Co-Infections: Modulators of SARS-CoV-2 Patients’ Clinical Sub-Phenotype
Cited by: 21
Author(s): Priyanka Mehta, Shweta Sahni, Samreen Siddiqui, Neha Mishra, Pooja Sharma, Sachin Sharma, Akansha Tyagi, Partha Chattopadhyay, A Vivekanand, Priti Devi, Azka Khan, Swati Waghdhare, Sandeep Budhiraja, Bharathram Uppili, Ranjeet Maurya, Vivek Nangia, Uzma Shamim, Pranjal Pratim Hazarika, Saruchi Wadhwa, Nishu Tyagi, Arun Dewan, Bansidhar Tarai, Poonam Das, Mohammed Faruq, Anurag Agrawal, Sujeet Jha, Rajesh Pandey
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2017.02319

Taxonomic and Functional Differences between Microbial Communities in Qinghai Lake and Its Input Streams
Cited by: 50
Author(s): Ze Ren, Fang Wang, Xiaodong Qu, James J. Elser, Yang Liu, Limin Chu
Software Mentions: 3
Published: about 7 years ago

10.3390/microorganisms8030318

Pesticides Decrease Bacterial Diversity and Abundance of Irrigated Rice Fields
Cited by: 17
Author(s): Michael Onwona-Kwakye, Kimberly Plants-Paris, K Kéita, Jessica Lee, Paul J. Van den Brink, Jonathan N. Hogarh, Charles Darkoh
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2164-10-353

Gene copy number variation throughout the Plasmodium falciparum genome
Cited by: 40
Author(s): Ian H. Cheeseman, Natalia Gomez-Escobar, Céline Carret, Alasdair Ivens, Lindsay B. Stewart, Kevin K. A. Tetteh, David J. Conway
Software Mentions: 2
Published: almost 16 years ago

10.3390/microorganisms7090333

Microbial Assemblages in Pressurized Antarctic Brine Pockets (Tarn Flat, Northern Victoria Land): A Hotspot of Biodiversity and Activity
Cited by: 19
Author(s): Maria Papale, Angelina Lo Giudice, Antonella Conte, Carmen Rizzo, Alessandro Ciro Rappazzo, Giovanna Maimone, Gabriella Caruso, Rosabruna La Ferla, Maurizio Azzaro, Concetta Gugliandolo, Rodolfo Paranhos, Anderson de Souza Cabral, Vincenzo Romano Spica, Mauro Guglielmin
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0138837

Characterization of Bacterial, Archaeal and Eukaryote Symbionts from Antarctic Sponges Reveals a High Diversity at a Three-Domain Level and a Particular Signature for This Ecosystem
Cited by: 62
Author(s): Susana Rodriguez‐Marconi, Rodrigo De la Iglesia, Beatriz Dı́ez, Cássio A. Fonseca, Eduardo Hajdu, Nicole Trefault
Software Mentions: 2
Published: about 9 years ago

10.1186/1297-9716-42-109

Central nervous system gene expression changes in a transgenic mouse model for bovine spongiform encephalopathy
Cited by: 10
Author(s): Raül Tortosa, Xavier Castells, Enríc Vidal, Carme Costa, María del Carmen Ruiz de Villa, Álex Sánchez, Anna Barceló, Juan María Torres, M. Pumarola, Joaquı́n Ariño
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0121169

T-Cell Activation and Early Gene Response in Dogs
Cited by: 10
Author(s): Sally Mortlock, Jerry Wei, Peter Williamson
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0006534

Increased Numbers of IL-7 Receptor Molecules on CD4+CD25−CD107a+ T-Cells in Patients with Autoimmune Diseases Affecting the Central Nervous System
Cited by: 10
Author(s): Nalini Vudattu, Sharon Kühlmann‐Berenzon, Mohsen Khademi, V L Seyfert, Tomas Olsson, Markus Maeurer
Software Mentions: 2
Published: over 15 years ago

10.3390/ijms21124452

A Peptidic Thymidylate-Synthase Inhibitor Loaded on Pegylated Liposomes Enhances the Antitumour Effect of Chemotherapy Drugs in Human Ovarian Cancer Cells
Cited by: 5
Author(s): Gaetano Marverti, Gaia Gozzi, Eleonora Maretti, Angela Lauriola, Leda Severi, Francesca Sacchetti, Lorena Losi, Salvatore Pacifico, Stefania Ferrari, Glauco Ponterini, Eliana Grazia Leo, Maria Paola Costi, Domenico D’Arca
Software Mentions: 2
Published: over 4 years ago

10.3389/fphar.2018.00454

Proteomic and Bioinformatic Studies for the Characterization of Response to Pemetrexed in Platinum Drug Resistant Ovarian Cancer
Cited by: 7
Author(s): Leda Severi, Lorena Losi, Sergio Fonda, Laura Taddia, Gaia Gozzi, Gaetano Marverti, Fulvio Magni, Clizia Chinello, Martina Stella, Jalid Sheouli, Elena Ioana Braicu, Filippo Genovese, Angela Lauriola, María Luisa Dalla Chiara, Alessandra Gualandi, Domenico D’Arca, Stefania Ferrari, Maria Paola Costi
Software Mentions: 2
Published: over 6 years ago

10.1002/em.20639

Pulmonary response to surface‐coated nanotitanium dioxide particles includes induction of acute phase response genes, inflammatory cascades, and changes in microRNAs: A toxicogenomic study
Cited by: 148
Author(s): Sabina Halappanavar, Petra Jackson, Andrew Williams, Keld Alstrup Jensen, Karin Sørig Hougaard, Ulla Vogel, Carole L. Yauk, Håkan Wallin
Software Mentions: 2
Published: almost 14 years ago

10.3390/cancers13092061

Structural Bases for the Synergistic Inhibition of Human Thymidylate Synthase and Ovarian Cancer Cell Growth by Drug Combinations
Cited by: 1
Author(s): Cecilia Pozzi, Matteo Santucci, Gaetano Marverti, Domenico D’Arca, Lorenzo Tagliazucchi, Stefania Ferrari, Gaia Gozzi, Lorena Losi, Giusy Tassone, Stefano Mangani, Glauco Ponterini, Maria Paola Costi
Software Mentions: 2
Published: over 3 years ago

10.1021/acs.jmedchem.0c02107

Folic Acid–Peptide Conjugates Combine Selective Cancer Cell Internalization with Thymidylate Synthase Dimer Interface Targeting
Cited by: 12
Author(s): Gaetano Marverti, María Luisa Dalla Chiara, Andrea Martello, Domenico D’Arca, Salvatore Pacifico, Renzo Guerrini, Francesca Spyrakis, Gaia Gozzi, Angela Lauriola, Matteo Santucci, Giuseppe Cannazza, Lorenzo Tagliazucchi, Addolorata Stefania Cazzato, Lorena Losi, Stefania Ferrari, Glauco Ponterini, Maria Paola Costi
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12867-015-0047-3

Genes targeted by the Hedgehog-signaling pathway can be regulated by Estrogen related receptor β
Cited by: 20
Author(s): Yuan Lu, Jilong Li, Jianlin Cheng, Dennis B. Lubahn
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0211739

Identification of the X-linked germ cell specific miRNAs (XmiRs) and their functions
Cited by: 17
Author(s): Hiromitsu Ota, Yumi Ito-Matsuoka, Yasuhisa Matsui
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0009513

Bayesian Network Expansion Identifies New ROS and Biofilm Regulators
Cited by: 21
Author(s): Andrew Hodges, Dongjuan Dai, Zuoshuang Xiang, Peter J. Woolf, Chuanwu Xi, Yongqun He
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0143828

Analysis of Microtubule-Associated-Proteins during IBA-Mediated Adventitious Root Induction Reveals KATANIN Dependent and Independent Alterations of Expression Patterns
Cited by: 13
Author(s): Mohamad Abu-Abied, Inna Mordehaev, Gujulla B Sunil Kumar, Ron Ophir, Geoffrey O. Wasteneys, Einat Sadot
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0183534

New approach to generating insights for aging research based on literature mining and knowledge integration
Cited by: 6
Author(s): Yeondae Kwon, Yukikazu Natori, Masaru Tanokura
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0034151

Diagnosis of Pancreatic Ductal Adenocarcinoma and Chronic Pancreatitis by Measurement of microRNA Abundance in Blood and Tissue
Cited by: 105
Author(s): Andrea S. Bauer, Andreas Keller, Eithne Costello, William Greenhalf, Melanie Bier, Anne Borries, Markus Beier, John P. Neoptolemos, Markus W. Büchler, Jens Werner, Nathalia A. Giese, Jörg D. Hoheisel
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0218395

Profiling microRNA expression in murine bone healing and non-union formation: Role of miR-140 during the early stage of bone healing
Cited by: 2
Author(s): Marcel Orth, Cláudia Scheuer, Christina Backes, Andreas Keller, Mika F. Rollmann, Benedikt J. Braun, Nicole Ludwig, Eckart Meese, Tim Pohlemann, Matthias W. Laschke, Michael D. Menger, Tina Histing
Software Mentions: 1
Published: over 5 years ago

10.1186/s13148-019-0789-8

Distinct DNA methylation targets by aging and chronic inflammation: a pilot study using gastric mucosa infected with Helicobacter pylori
Cited by: 20
Author(s): Satoshi Yamashita, Sohachi Nanjo, Emil Rehnberg, Naoko Iida, Hideyuki Takeshima, Takayuki Ando, Takao Maekita, Toshiro Sugiyama, Toshikazu Ushijima
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2014.00265

The feasibility of automated online flow cytometry for in-situ monitoring of microbial dynamics in aquatic ecosystems
Cited by: 106
Author(s): Michael D. Besmer, David G. Weissbrodt, Bradley E. Kratochvil, JÃ1⁄4rg A. Sigrist, Mathias S. Weyland, Frederik Hammes
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0233089

Structure-based drug repositioning explains ibrutinib as VEGFR2 inhibitor
Cited by: 18
Author(s): Melissa F. Adasme, Daniele Parisi, Kristien Van Belle, Sebastian Salentin, V. Joachim Haupt, Gary Jennings, Jörg‐Christian Heinrich, Jean Herman, Ben Sprangers, Thierry Louat, Yves Moreau, Michael Schroeder
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2164-15-826

Gene expression profiling in juvenile and mature cuttings of Eucalyptus grandis reveals the importance of microtubule remodeling during adventitious root formation
Cited by: 42
Author(s): Mohamad Abu-Abied, David Szwerdszarf, Inna Mordehaev, Yossi Yaniv, Saar Levinkron, Mor Rubinstein, Joseph Riov, Ron Ophir, Einat Sadot
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-13-102

Genome-wide dynamic transcriptional profiling in clostridium beijerinckii NCIMB 8052 using single-nucleotide resolution RNA-Seq
Cited by: 72
Author(s): Yi Wang, Xiangzhen Li, Yuejian Mao, Hans P. Blaschek
Software Mentions: 1
Published: almost 13 years ago

10.1038/srep02712

A computational approach to chemical etiologies of diabetes
Cited by: 30
Author(s): Karine Audouze, Søren Brunak, Philippe Grandjean
Software Mentions: 1
Published: over 11 years ago

10.1186/bcr2839

Expression of microRNA and their gene targets are dysregulated in preinvasive breast cancer
Cited by: 158
Author(s): Bethany N. Hannafon, Paola Sebastiani, Antonio de las Morenas, Jining Lü, Carol L. Rosenberg
Software Mentions: 1
Published: almost 14 years ago

10.1038/s41598-017-00527-8

Metabolomics reveals biotic and abiotic elicitor effects on the soft coral Sarcophyton ehrenbergi terpenoid content
Cited by: 21
Author(s): Mohamed A. Farag, Dalia A. Al-Mahdy, A. B. Meyer, Hildegard Westphal, Ludger A. Wessjohann
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-11924-4

From malaria to cancer: Computational drug repositioning of amodiaquine using PLIP interaction patterns
Cited by: 37
Author(s): Sebastian Salentin, Melissa F. Adasme, Jörg C. Heinrich, V. Joachim Haupt, Simone Daminelli, Yixin Zhang, Michael Schroeder
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2229-9-134

Genome-wide analysis of major intrinsic proteins in the tree plant Populus trichocarpa: Characterization of XIP subfamily of aquaporins from evolutionary perspective
Cited by: 225
Author(s): Anjali Gupta, Ramasubbu Sankararamakrishnan
Software Mentions: 1
Published: almost 16 years ago

10.1186/2044-5040-2-10

Premature expression of a muscle fibrosis axis in chronic HIV infection
Cited by: 29
Author(s): Rebecca Kusko, Camellia Banerjee, Kimberly Long, Ariana Darcy, Jeffrey S. Otis, Paola Sebastiani, Simon Melov, Mark A. Tarnopolsky, Shalender Bhasin, Monty Montano
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-019-50005-6

FGF5 methylation is a sensitivity marker of esophageal squamous cell carcinoma to definitive chemoradiotherapy
Cited by: 12
Author(s): Jun Iwabu, Satoshi Yamashita, Hideyuki Takeshima, Takayoshi Kishino, Toshifumi Takahashi, Ichiro Oda, Kazuo Koyanagi, Hiroyasu Igaki, Yuji Tachimori, Hiroyuki Daiko, Hiromichi Nakazato, Kazuhiro Nishiyama, Yi‐Chia Lee, Kazuhiro Hanazaki, Toshikazu Ushijima
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-52491-0

Antarctic sponges from the Terra Nova Bay (Ross Sea) host a diversified bacterial community
Cited by: 16
Author(s): Serena Savoca, Angelina Lo Giudice, Maria Papale, Santina Mangano, Consolazione Caruso, Nunziacarla Spanò, Luigi Michaud, Carmen Rizzo
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-56883-0

Epigenetic reprogramming underlies efficacy of DNA demethylation therapy in osteosarcomas
Cited by: 13
Author(s): Naofumi Asano, Hideyuki Takeshima, Satoshi Yamashita, Hironori Takamatsu, Naoko Hattori, Takashi Kubo, Akihiko Yoshida, Eisuke Kobayashi, Robert Nakayama, Morio Matsumoto, Masaya Nakamura, Hitoshi Ichikawa, Akira Kawai, Tadashi Kondo, Toshikazu Ushijima
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.09584

The REST remodeling complex protects genomic integrity during embryonic neurogenesis
Cited by: 58
Author(s): Tamilla Nechiporuk, James C. McGann, Karin Müllendorff, Jenny Hsieh, Wolfgang Wurst, Thomas Floss, Gail Mandel
Software Mentions: 1
Published: almost 9 years ago

Projects: bioconductor: Heatplus

Papers Mentioning Heatplus 77