bioconductor: EBImage | Projects | Ecosyste.ms: Papers

10.1002/ece3.7992

Using Delaunay triangulation to sample whole‐specimen color from digital images
Cited by: 5
Author(s): Jennifer J Valvo, J. David Aponte, Mitch J Daniel, Kenna Dwinell, Helen Rodd, David Houle, Kimberly A. Hughes
Software Mentions: 12
Published: almost 3 years ago

10.12688/f1000research.27062.2

SAPHIR: a Shiny application to analyze tissue section images
Cited by: 0
Author(s): Elodie Germani, Hugues Lelouard, Mathieu Fallet
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pntd.0006862

Viridot: An automated virus plaque (immunofocus) counter for the measurement of serological neutralizing responses with application to dengue virus
Cited by: 89
Author(s): Leah C. Katzelnick, Ana Coello Escoto, Benjamin D. McElvany, Christian Chávez, Henrik Salje, Wensheng Luo, Isabel Rodríguez-Barraquer, Richard G. Jarman, Anna P. Durbin, Sean A. Diehl, Derek J. Smith, Stephen S. Whitehead, Derek A. T. Cummings
Software Mentions: 8
Published: almost 6 years ago

10.15252/msb.20188238

Unraveling mitotic protein networks by 3D multiplexed epitope drug screening
Cited by: 1
Author(s): Lorenz Maier, Stefan M. Kallenberger, Katharina Jechow, Marcel Waschow, Roland Eils, Christian Conrad
Software Mentions: 8
Published: almost 6 years ago

10.1186/s12864-016-3260-7

DeSigN: connecting gene expression with therapeutics for drug repurposing and development
Cited by: 52
Author(s): Bernard Kok Bang Lee, Kai Hung Tiong, Jit Kang Chang, Chee Sun Liew, Zainal Ariff Abdul Rahman, Aik Choon Tan, Tsung Fei Khang, Sok Ching Cheong
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0243746

Image-based screen capturing misfolding status of Niemann-Pick type C1 identifies potential candidates for chaperone drugs
Cited by: 7
Author(s): Ryuta Shioi, Fumika Karaki, Hirosuke Yoshioka, Tomomi Noguchi‐Yachide, Minoru Ishikawa, Kosuke Dodo, Yuichi Hashimoto, Mikiko Sodeoka, Kenji Ohgane
Software Mentions: 6
Published: over 3 years ago

10.1186/s12931-019-1144-5

Mass spectrometry imaging as a tool for evaluating the pulmonary distribution of exogenous surfactant in premature lambs
Cited by: 7
Author(s): Riccardo Zecchi, Pietro Franceschi, Laura Tigli, Francesca Ricci, Francesca Boscaro, Barbara Pioselli, Valentina Mileo, Xabier Murgia, Federico Bianco, Fabrizio Salomone, Augusto F. Schmidt, Noah H. Hillman, Matthew W. Kemp, Alan H. Jobe
Software Mentions: 6
Published: almost 5 years ago

10.1038/srep26454

GBIQ: a non-arbitrary, non-biased method for quantification of fluorescent images
Cited by: 2
Author(s): Youichirou Ninomiya, Wei Zhao, Yumiko Saga
Software Mentions: 6
Published: about 8 years ago

10.1007/s00604-018-3195-6

A smartphone readout system for gold nanoparticle-based lateral flow assays: application to monitoring of digoxigenin
Cited by: 46
Author(s): Christoph Ruppert, Navneet Phogat, Stefan Laufer, Matthias Kohl, Hans‐Peter Deigner
Software Mentions: 6
Published: over 5 years ago

10.3389/fnins.2020.00516

Machine Learning Representation of Loss of Eye Regularity in a Drosophila Neurodegenerative Model
Cited by: 6
Author(s): Sergio Díez-Hermano, Marı́a D. Ganfornina, Esteban Vegas, Diego Sánchez
Software Mentions: 5
Published: about 4 years ago

10.7717/peerj.7255

colocr: an R package for conducting co-localization analysis on fluorescence microscopy images
Cited by: 7
Author(s): Mahmoud Ahmed, Trang Huyen Lai, Deok Ryong Kim
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0180007

Diversity of fruit-feeding butterflies in a mountaintop archipelago of rainforest
Cited by: 18
Author(s): Geanne Carla Novais Pereira, Marcel Serra Coelho, Marina do Vale Beirão, Rodrigo Fagundes Braga, Geraldo Wilson Fernandes
Software Mentions: 5
Published: about 7 years ago

10.7554/eLife.46883

Proteome-wide signatures of function in highly diverged intrinsically disordered regions
Cited by: 115
Author(s): Taraneh Zarin, Bob Strome, Alex N Nguyen Ba, Simon Alberti, Julie D. Forman‐Kay, Alan M. Moses
Software Mentions: 5
Published: about 5 years ago

10.1186/s40462-014-0026-1

Adding structure to land cover – using fractional cover to study animal habitat use
Cited by: 8
Author(s): Mirjana Bevanda, Ned Horning, Björn Reineking, Marco Heurich, Martin Wegmann, Jan Mueller
Software Mentions: 5
Published: over 9 years ago

10.1186/1471-2105-14-S16-S4

cellXpress: a fast and user-friendly software platform for profiling cellular phenotypes
Cited by: 25
Author(s): Danai Laksameethanasan, Rui Zhen Tan, Geraldine Wei-Ling Toh, Lit‐Hsin Loo
Software Mentions: 4
Published: almost 11 years ago

10.1007/s00213-018-5131-1

Pupillary reactivity to alcohol cues as a predictive biomarker of alcohol relapse following treatment in a pilot study
Cited by: 12
Author(s): Timo L. Kvamme, Mads Uffe Pedersen, Morten Overgaard, Kristine Rømer Thomsen, Valerie Voon
Software Mentions: 4
Published: over 5 years ago

10.1534/genetics.117.300077

RNA Interference (RNAi) Screening inDrosophila
Cited by: 86
Author(s): Florian Heigwer, Fillip Port, Michael Boutros
Software Mentions: 4
Published: over 6 years ago

10.1534/g3.113.009431

gitter: A Robust and Accurate Method for Quantification of Colony Sizes From Plate Images
Cited by: 99
Author(s): Omar Wagih, Leopold Parts
Software Mentions: 4
Published: over 10 years ago

10.1002/ajpa.24272

Novel strategies for the characterization of cancellous bone morphology: Virtual isolation and analysis
Cited by: 5
Author(s): Alessio Veneziano, Marine Cazenave, Fabio Alfieri, Daniele Panetta, Damiano Marchi
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1008120

Deconvolving the contributions of cell-type heterogeneity on cortical gene expression
Cited by: 62
Author(s): Ellis Patrick, Mariko Taga, Ayla Ergün, Bernard Ng, William Casazza, Maria Cimpean, Christina J. Yung, Julie A. Schneider, David A. Bennett, Chris Gaiteri, Philip L. De Jager, Elizabeth M. Bradshaw, Sara Mostafavi
Software Mentions: 4
Published: almost 4 years ago

10.1007/s00216-021-03393-6

Sample preparation strategy for the detection of steroid-like compounds using MALDI mass spectrometry imaging: pulmonary distribution of budesonide as a case study
Cited by: 11
Author(s): Riccardo Zecchi, Pietro Franceschi, Laura Tigli, Davide Amidani, Chiara Catozzi, Francesca Ricci, Fabrizio Salomone, Giuseppe Pieraccini, Barbara Pioselli, Valentina Mileo
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pgen.1008595

Super-resolution imaging of RAD51 and DMC1 in DNA repair foci reveals dynamic distribution patterns in meiotic prophase
Cited by: 22
Author(s): Johan A. Slotman, Maarten W. Paul, Fabrizia Carofiglio, H. Martijn de Gruiter, Tessa Vergroesen, Lieke Koornneef, Wiggert A. van Cappellen, Adriaan B. Houtsmuller, Willy M. Baarends
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0206628

Simplified, automated methods for assessing pixel intensities of fluorescently-tagged drugs in cells
Cited by: 0
Author(s): Allan Kachelmeier, Tsering Shola, William B. Meier, Anastasiya Johnson, Meiyan Jiang, Peter S. Steyger
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0248320

Plant structural diversity alters sediment retention on and underneath herbaceous vegetation in a flume experiment
Cited by: 6
Author(s): Lena Kretz, Katinka Koll, Carolin Seele‐Dilbat, Fons van der Plas, Alexandra Weigelt, Christian Wirth
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.40174

Time-resolved mapping of genetic interactions to model rewiring of signaling pathways
Cited by: 19
Author(s): Florian Heigwer, Christian Scheeder, Thilo Miersch, Barbara Schmitt, Claudia Blass, Mischan Vali Pour Jamnani, Michael Boutros
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.48401

Accelerated viral dynamics in bat cell lines, with implications for zoonotic emergence
Cited by: 83
Author(s): Cara E. Brook, Mike Boots, Kartik Chandran, Andrew Dobson, Christian Drosten, Andrea L. Graham, Bryan T. Grenfell, Marcel A. Müller, Melinda Ng, Lin‐Fa Wang, Anieke van Leeuwen
Software Mentions: 3
Published: over 4 years ago

10.1093/bioinformatics/bty855

CANDI: an R package and Shiny app for annotating radiographs and evaluating computer-aided diagnosis
Cited by: 4
Author(s): Marcus A. Badgeley, Manway Liu, Benjamin S. Glicksberg, Mark Shervey, John R. Zech, Khader Shameer, Joseph Lehár, Eric K. Oermann, Michael V. McConnell, Thomas M. Snyder, Joel T. Dudley
Software Mentions: 3
Published: almost 6 years ago

10.1017/cts.2020.531

Developing image analysis pipelines of whole-slide images: Pre- and post-processing
Cited by: 12
Author(s): Byron H. Smith, Meyke Hermsen, Elizabeth R. Lesser, Deepak Ravichandar, Walter K. Kremers
Software Mentions: 3
Published: almost 4 years ago

10.1186/1471-2105-12-126

STSE: Spatio-Temporal Simulation Environment Dedicated to Biology
Cited by: 9
Author(s): Szymon Stoma, Martina Fröhlich, Susanne Gerber, Edda Klipp
Software Mentions: 3
Published: over 13 years ago

10.1186/1471-2105-11-208

Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data
Cited by: 8
Author(s): Mike L. Smith, Mark J. Dunning, Simon Tavaré, Andy G. Lynch
Software Mentions: 3
Published: over 14 years ago

10.1186/1471-2105-9-85

Statistical issues in the analysis of Illumina data
Cited by: 91
Author(s): Mark J. Dunning, Nuno L. Barbosa‐Morais, Andy G. Lynch, Simon Tavaré, Matthew E. Ritchie
Software Mentions: 3
Published: over 16 years ago

10.1098/rsos.150360

Emergence of intercolonial variation in termite shelter tube patterns and prediction of its underlying mechanism
Cited by: 19
Author(s): Nobuaki Mizumoto, Keiko Kobayashi, Kenji Matsuura
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-020-59276-w

Scanning electron microscopy and machine learning reveal heterogeneity in capsular morphotypes of the human pathogen Cryptococcus spp.
Cited by: 3
Author(s): William Lopes, Giuliano Netto Flores Cruz, Márcio L. Rodrigues, Mendeli H. Vainstein, Lívia Kmetzsch, Charley Christian Staats, Marilene Henning Vainstein, Augusto Schrank
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0194855

Activation of human macrophages by human corneal allogen in vitro
Cited by: 4
Author(s): Paola Kammrath Betancor, Antonia Hildebrand, Daniel Böhringer, Florian Emmerich, Günther Schlunck, Thomas Reinhard, Thabo Lapp
Software Mentions: 3
Published: over 6 years ago

10.1186/s13007-017-0163-9

rosettR: protocol and software for seedling area and growth analysis
Cited by: 11
Author(s): Filipa Tomé, Karel Jansseune, Bernadette Saey, Jack Grundy, Korneel Vandenbroucke, Matthew A. Hannah, Henning Redestig
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2105-15-342

A comparative study of cell classifiers for image-based high-throughput screening
Cited by: 12
Author(s): Syed Saiden Abbas, Tjeerd M. H. Dijkstra, Tom Heskes
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2105-14-336

A novel phenotypic dissimilarity method for image-based high-throughput screens
Cited by: 15
Author(s): Xian Zhang, Michael Boutros
Software Mentions: 2
Published: over 10 years ago

10.1002/pld3.309

The Arabidopsis thaliana nucleotide sugar transporter GONST2 is a functional homolog of GONST1
Cited by: 4
Author(s): Beibei Jing, Toshiki Ishikawa, Nicole E. Soltis, Noriko Inada, Yan Liang, Gosia M. Murawska, Lin Fang, Fekadu Andeberhan, Venkataramana R. Pidatala, Xiaolan Yu, Edward E. K. Baidoo, Maki Kawai‐Yamada, Dominique Loqué, Daniel J. Kliebenstein, Paul Dupree, Jenny C. Mortimer
Software Mentions: 2
Published: over 3 years ago

10.1186/s13007-019-0549-y

Phenotyping analysis of maize stem using micro-computed tomography at the elongation and tasseling stages
Cited by: 7
Author(s): Ying Zhang, Liming Ma, Jinglu Wang, Xiaodong Wang, Xinyu Guo, Jianjun Du
Software Mentions: 2
Published: over 4 years ago

10.1002/advs.202001914

Enhanced Protein Damage Clearance Induces Broad Drug Resistance in Multitype of Cancers Revealed by an Evolution Drug‐Resistant Model and Genome‐Wide siRNA Screening
Cited by: 8
Author(s): Fangyuan Shao, Xueying Lyu, Masahiro Kai, Lisi Xie, Haitao Wang, Hao Xiao, Jie Li, Qiang Chen, Ren-Bo Ding, Ping Chen, Fuqiang Xing, Xu Zhang, Guanghui Luo, Wenjiao Zhu, Gregory Yin Ming Cheng, Ng Wai Lon, Scott E. Martin, Guanyu Wang, Guokai Chen, Yunlu Dai, Chu‐Xia Deng
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pgen.1005789

The Quantitative Basis of the Arabidopsis Innate Immune System to Endemic Pathogens Depends on Pathogen Genetics
Cited by: 66
Author(s): Jason A. Corwin, Daniel Copeland, Julie E. Feusier, Anushriya Subedy, Robert Eshbaugh, Christine M. Palmer, Julin N. Maloof, Daniel J. Kliebenstein
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0109369

A Small-Scale Comparison of Iceland Scallop Size Distributions Obtained from a Camera Based Autonomous Underwater Vehicle and Dredge Survey
Cited by: 7
Author(s): Warsha Singh, Erla Björk Örnólfsdóttir, Gunnar Stefansson
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0151754

Regionally Discrete Aqueous Humor Outflow Quantification Using Fluorescein Canalograms
Cited by: 44
Author(s): Ralitsa T. Loewen, Eric N. Brown, Pritha Roy, Joel S. Schuman, Ian A. Sigal, Nils A. Loewen
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0249460

A metric learning method for estimating myelin content based on T2-weighted MRI from a de- and re-myelination model of multiple sclerosis
Cited by: 0
Author(s): Glen Pridham, Shahnewaz Hossain, Khalil S. Rawji, Yunyan Zhang
Software Mentions: 2
Published: over 3 years ago

10.1186/1478-811X-11-24

Light microscopy applications in systems biology: opportunities and challenges
Cited by: 35
Author(s): Paul Paul Michel Aloyse Antony, Christophe Trefois, Aleksandar Stojanović, Aidos Baumuratov, Karol Kozak
Software Mentions: 2
Published: over 11 years ago

10.15252/emmm.201911622

Inhibition of transcription by dactinomycin reveals a new characteristic of immunogenic cell stress
Cited by: 56
Author(s): Juliette Humeau, Allan Sauvat, Giulia Cerrato, Wei Xie, Friedemann Loos, Francesca Iannantuoni, Lucillia Bezu, Sophie Lévesque, Juliette Paillet, Jonathan Pol, Marion Leduc, Laurence Zitvogel, Oliver Kepp
Software Mentions: 2
Published: over 4 years ago

10.1042/ETLS20160025

Computational biology: deep learning
Cited by: 60
Author(s): William Jones, Kaur Alasoo, Dmytro Fishman, Leopold Parts
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2019.00352

Using Growth and Transpiration Phenotyping Under Controlled Conditions to Select Water Efficient Banana Genotypes
Cited by: 23
Author(s): Jelle van Wesemael, Ewaut Kissel, David Eyland, Tracy Lawson, Rony Swennen, Sébastien Carpentier
Software Mentions: 2
Published: over 5 years ago

10.1186/s13036-019-0161-8

Tools to reverse-engineer multicellular systems: case studies using the fruit fly
Cited by: 9
Author(s): Qinfeng Wu, Nilay Kumar, Vijay Velagala, Jeremiah J. Zartman
Software Mentions: 2
Published: over 5 years ago

10.1038/srep08695

Microbial communities on flower surfaces act as signatures of pollinator visitation
Cited by: 74
Author(s): Masayuki Ushio, Eri Yamasaki, Hiroyuki Takasu, Atsushi J. Nagano, Shohei Fujinaga, Mie N. Honjo, Mito Ikemoto, Shoko Sakai, Hiroshi Kudoh
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-61825-2

In vivo dynamic analysis of BMP-2-induced ectopic bone formation
Cited by: 33
Author(s): Kunihiko Hashimoto, Takashi Kaito, Masayuki Furuya, Shigeto Seno, Daisuke Okuzaki, Junichi Kikuta, Hiroyuki Tsukazaki, Hideo Matsuda, Hideki Yoshikawa, Masaru Ishii
Software Mentions: 2
Published: over 4 years ago

10.1093/hmg/ddy405

Dynamic transcriptomic analysis reveals suppression of PGC1α/ERRα drives perturbed myogenesis in facioscapulohumeral muscular dystrophy
Cited by: 46
Author(s): Christopher R. S. Banerji, Maryna Panamarova, Johanna Prüller, Nicolas Figeac, Husam Hebaishi, Efthymios Fidanis, Alka Saxena, Julian Contet, Sabrina Sacconi, Simone Severini, Peter S. Zammit
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.8533

Genetically-defined novel oral squamous cell carcinoma cell lines for the development of molecular therapies
Cited by: 44
Author(s): Muhammad Zaki Hidayatullah Fadlullah, Ivy Kim Ni Chiang, Kalen R. Dionne, Pei San Yee, Chai Phei Gan, Kin Kit Sam, Kai Hung Tiong, Adrian Kwok Wen Ng, Daniel Martin, Ka Keat Lim, Thomas George Kallarakkal, Wan Mahadzir Wan Mustafa, Shin Hin Lau, Mannil Thomas Abraham, Rosnah Binti Zain, Zainal Ariff Abdul Rahman, Alfredo A. Molinolo, Vyomesh Patel, J. Silvio Gutkind, Aik Choon Tan, Sok Ching Cheong
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2020.01265

The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought
Cited by: 4
Author(s): A. Paola Zuluaga, Przemyslaw Bidzinski, Emilie Chanclud, Aurélie Ducasse, Bastien Cayrol, Michael Gomez Selvaraj, Manabu Ishitani, Alain Jauneau, Laurent Deslandes, Thomas Kroj, Corinne Michel, Boris Szurek, Ralf Koebnik, Jean-Benoît Morel
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.molcel.2020.02.005

Mouse Heterochromatin Adopts Digital Compaction States without Showing Hallmarks of HP1-Driven Liquid-Liquid Phase Separation
Cited by: 193
Author(s): Fabian Erdel, Anne Rademacher, Rifka Vlijm, Jana Tünnermann, Lukas Frank, Robin Weinmann, Elisabeth Schweigert, Klaus Yserentant, Johan Hummert, Caroline Bauer, Sabrina Schumacher, Ahmad Al Alwash, Christophe Normand, Dirk‐Peter Herten, Johann Engelhardt, Karsten Rippe
Software Mentions: 1
Published: over 4 years ago

10.1534/g3.111.001487

Natural Genetic Variation for Growth and Development Revealed by High-Throughput Phenotyping inArabidopsis thaliana
Cited by: 58
Author(s): Xu Zhang, Ronald J. Hause, Justin O. Borevitz
Software Mentions: 1
Published: over 12 years ago

10.15252/embj.2019101828

Biologically indeterminate yet ordered promiscuous gene expression in single medullary thymic epithelial cells
Cited by: 52
Author(s): Fatima Dhalla, Jeanette Baran-Gale, Stefano Maio, Lia Chappell, Georg A. Holländer, Chris P. Ponting
Software Mentions: 1
Published: over 4 years ago

10.1111/gbb.12487

Conservation of the behavioral and transcriptional response to social experience among Drosophilids
Cited by: 10
Author(s): Ryan K. Shultzaberger, Sarah J. Johnson, Jeffrey R. Wagner, Kwang Ha, Therese A. Markow, Ralph J. Greenspan
Software Mentions: 1
Published: about 6 years ago

10.1186/s13000-020-01040-9

Detection and stage classification of Plasmodium falciparum from images of Giemsa stained thin blood films using random forest classifiers
Cited by: 9
Author(s): Syed Saiden Abbas, Tjeerd M. H. Dijkstra
Software Mentions: 1
Published: almost 4 years ago

10.3390/bios8040089

Homotransfer FRET Reporters for Live Cell Imaging
Cited by: 12
Author(s): Nicole E. Snell, Vishnu P. Rao, Kendra M. Seckinger, Junyi Liang, Jenna Leser, Allison E. Mancini, Mark A. Rizzo
Software Mentions: 1
Published: almost 6 years ago

10.1083/jcb.201603040

Mycobacterium tuberculosis replicates within necrotic human macrophages
Cited by: 100
Author(s): Thomas R. Lerner, Sophie Borel, Greenwood Dj, Urška Repnik, Mark Russell, Susanne Herbst, Martin L. Jones, Lucy M. Collinson, Gareth Griffiths, Maximiliano G. Gutierrez
Software Mentions: 1
Published: over 7 years ago

10.1186/s13020-019-0228-y

High content screening for drug discovery from traditional Chinese medicine
Cited by: 19
Author(s): Jing Wang, Mingyue Wu, Jieqiong Tan, Min Li, Jiahong Lu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-020-03324-w

Lysosomotropic agents including azithromycin, chloroquine and hydroxychloroquine activate the integrated stress response
Cited by: 18
Author(s): Ai-Ling Tian, Qi Wu, Peng Liu, Lu Zhao, Isabelle Martins, Oliver Kepp, Marion Leduc
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0150170

Advanced Intestinal Cancers often Maintain a Multi-Ancestral Architecture
Cited by: 5
Author(s): Christopher D. Zahm, Joseph M. Szulczewski, Alyssa A. Leystra, Terrah J. Paul Olson, Linda Clipson, Dawn M. Albrecht, Malisa Middlebrooks, Andrew Thliveris, Kristina A. Matkowskyj, Mary Kay Washington, Michael A. Newton, Kevin W. Eliceiri, Richard B. Halberg
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0099444

Fingolimod Attenuates Splenocyte-Induced Demyelination in Cerebellar Slice Cultures
Cited by: 22
Author(s): Adam J. Pritchard, Anis K. Mir, Kumlesh K. Dev
Software Mentions: 1
Published: about 10 years ago

10.1186/s12859-018-2578-3

SMoLR: visualization and analysis of single-molecule localization microscopy data in R
Cited by: 13
Author(s): Maarten W. Paul, H. Martijn de Gruiter, Lin Zhu, Willy M. Baarends, Wiggert A. van Cappellen, Adriaan B. Houtsmuller, Johan A. Slotman
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0100546

Theta-Burst Stimulation of Hippocampal Slices Induces Network-Level Calcium Oscillations and Activates Analogous Gene Transcription to Spatial Learning
Cited by: 14
Author(s): Graham K. Sheridan, Emad Moeendarbary, Mark Pickering, John O’Connor, Keith J. Murphy
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-019-41034-2

Automated segmentation of the corneal endothelium in a large set of ‘real-world’ specular microscopy images using the U-Net architecture
Cited by: 29
Author(s): Moritz Claudius Daniel, Lisa Atzrodt, Felicitas Bucher, Katrin Wacker, Stefan Böhringer, Thomas Reinhard, Daniel Böhringer
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1003409

Induction of Wnt-Inducible Signaling Protein-1 Correlates with Invasive Breast Cancer Oncogenesis and Reduced Type 1 Cell-Mediated Cytotoxic Immunity: A Retrospective Study
Cited by: 41
Author(s): David J. Klinke
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms21030940

TiO2 Nanomaterials Non-Controlled Contamination Could Be Hazardous for Normal Cells Located in the Field of Radiotherapy
Cited by: 3
Author(s): Yidan Wang, Allan Sauvat, Céline Lacrouts, J. Lebeau, Romain Grall, Marie Hullo, Fabrice Nesslany, Sylvie Chevillard
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-81217-4

Novel standardized method for extracellular flux analysis of oxidative and glycolytic metabolism in peripheral blood mononuclear cells
Cited by: 13
Author(s): Joëlle J. E. Janssen, Bart Lagerwaard, Annelies Bunschoten, H.F.J. Savelkoul, R. J. Joost van Neerven, Jaap Keijer, Vincent C.J. de Boer
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-92417-3

A new galling insect model enhances photosynthetic activity in an obligate holoparasitic plant
Cited by: 5
Author(s): Ryo Murakami, Ryo Ushima, Ryujiro Sugimoto, Daisuke Tamaoki, Ichirou Karahara, Yuko T. Hanba, Tatsuya Wakasugi, Tsutomu Tsuchida
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-021-99460-0

Mitochondrial and glycolytic extracellular flux analysis optimization for isolated pig intestinal epithelial cells
Cited by: 6
Author(s): Anna F. Bekebrede, Jaap Keijer, W.J.J. Gerrits, Vincent C.J. de Boer
Software Mentions: 1
Published: almost 3 years ago

10.18632/oncotarget.26215

The potent and selective cyclin-dependent kinases 4 and 6 inhibitor ribociclib (LEE011) is a versatile combination partner in preclinical cancer models
Cited by: 51
Author(s): Sunkyu Kim, Ralph Tiedt, Alice Loo, Thomas Horn, Scott Delach, Steven Kovats, Kristy Haas, Barbara Schacher Engstler, Alexander Cao, Maria Pinzon-Ortiz, Iain J. Mulford, Michael G. Acker, Rajiv Chopra, Christopher T. Brain, Emmanuelle di Tomaso, William R. Sellers, Giordano Caponigro
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13069-016-0043-3

Active transforming growth factor-β is associated with phenotypic changes in granulomas after drug treatment in pulmonary tuberculosis
Cited by: 36
Author(s): Robert M. DiFazio, Joshua T. Mattila, Edwin Klein, Lauren R. Cirrincione, Mondraya F. Howard, Eileen A. Wong, JoAnne L. Flynn
Software Mentions: 1
Published: over 8 years ago

10.3389/fcvm.2021.633609

Downregulation of Endothelial Plexin A4 Under Inflammatory Conditions Impairs Vascular Integrity
Cited by: 3
Author(s): Dianne Vreeken, Caroline S. Bruikman, Wendy Stam, Stefan Martinus Leonardus Cox, Zsófia Brigitta Nagy, Huayu Zhang, Rudmer Postma, Anton Jan van Zonneveld, G.K. Hovingh, J.M. van Gils
Software Mentions: 1
Published: about 3 years ago

10.3389/fncel.2014.00233

CX3CL1 is up-regulated in the rat hippocampus during memory-associated synaptic plasticity
Cited by: 67
Author(s): Graham K. Sheridan, Anita Wdowicz, Mark Pickering, Orla Watters, Paul Halley, Niamh C. O’Sullivan, Claire Mooney, David J. O’Connell, John O’Connor, Keith J. Murphy
Software Mentions: 1
Published: almost 10 years ago

10.3389/fimmu.2020.00540

TCR Dependent Metabolic Programming Regulates Autocrine IL-4 Production Resulting in Self-Tuning of the CD8+ T Cell Activation Setpoint
Cited by: 3
Author(s): Kali F. Crofts, Beth C. Holbrook, David R. Soto-Pantoja, David A. Ornelles, Martha A. Alexander-Miller
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2021.703887

Adapting Rapid Diagnostic Tests to Detect Historical Dengue Virus Infections
Cited by: 8
Author(s): Fernando Echegaray, Peter Laing, Samantha Hernandez, Sully Márquez, Amanda Harris, Ian Laing, Adam Chambers, Neil McLennan, Victor A. Sugiharto, Hua Wei Chen, Sandra Vivero Villagran, Abigail Collingwood, Magelda Montoya, Fausto Bustos Carrillo, Mark P. Simons, Philip J. Cooper, Andrea Lopez, Gabriel Trueba, Joseph Eisenberg, Shuenn Jue L. Wu, William B. Messer, Eva Harris, Joséfina Coloma, Leah C. Katzelnick
Software Mentions: 1
Published: about 3 years ago

10.1002/ece3.4412

Accurately quantifying the shape of birds’ eggs
Cited by: 42
Author(s): J. D. Biggins, J.E. Thompson, Tim R. Birkhead
Software Mentions: 1
Published: almost 6 years ago

Projects: bioconductor: EBImage

Papers Mentioning EBImage 81