Ecosyste.ms: Papers

10.1107/S2059798316002187

Diffraction-geometry refinement in the<i>DIALS</i>framework
Cited by: 146
Author(s): David Waterman, Graeme Winter, Richard J. Gildea, James M. Parkhurst, Aaron S. Brewster, Nicholas K. Sauter, Gwyndaf Evans
Software Mentions: 6
Published: over 8 years ago

10.7554/eLife.60265

The cryo-EM structure of the human uromodulin filament core reveals a unique assembly mechanism
Cited by: 20
Author(s): Jessica J. Stanisich, Dawid Zyla, Pavel Afanasyev, Jianlin Xu, Anne Kipp, Eric Olinger, Olivier Devuyst, Martin Pilhofer, Daniel Boehringer, Rudi Glockshuber
Software Mentions: 6
Published: over 4 years ago

10.1107/S1399004714028132

FEM: feature-enhanced map
Cited by: 155
Author(s): Pavel V. Afonine, Nigel W. Moriarty, Marat Mustyakimov, Oleg Sobolev, Thomas C. Terwilliger, Dušan Turk, Alexandre Urzhumtsev, Paul D. Adams
Software Mentions: 5
Published: over 9 years ago

10.1107/S2059798318006551

Real-space refinement in<i>PHENIX</i>for cryo-EM and crystallography
Cited by: 1,815
Author(s): Pavel V. Afonine, Billy K. Poon, Randy J. Read, Oleg Sobolev, Thomas C. Terwilliger, Alexandre Urzhumtsev, Paul D. Adams
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.67518

The structure of photosystem I from a high-light-tolerant cyanobacteria
Cited by: 13
Author(s): Zachary Dobson, Safa Ahad, Jackson Vanlandingham, Hila Toporik, Natalie Vaughn, Michael Vaughn, Dewight Williams, Michael Reppert, Petra Fromme, Yuval Mazor
Software Mentions: 5
Published: about 3 years ago

10.1107/S2052252518000519

Internal protein motions in molecular-dynamics simulations of Bragg and diffuse X-ray scattering
Cited by: 23
Author(s): Michael E. Wall
Software Mentions: 5
Published: almost 7 years ago

10.1126/sciadv.aax8286

Structure and mechanism of bactericidal mammalian perforin-2, an ancient agent of innate immunity
Cited by: 53
Author(s): Ni Tien, Fang Jiao, Xiulian Yu, Saša Aden, Lucy Ginger, Sophie I. Williams, Fangfang Bai, Vojtěch Pražák, Dimple Karia, Phillip J. Stansfeld, Peijun Zhang, George P. Munson, Gregor Anderluh, Simon Scheuring, R.J.C. Gilbert
Software Mentions: 4
Published: almost 5 years ago

10.1002/2211-5463.12700

C7orf59/LAMTOR4 phosphorylation and structural flexibility modulate Ragulator assembly
Cited by: 5
Author(s): Nadia Rasheed, Tatiani B. Lima, Gustavo Fernando Mercaldi, Andrey Fabricio Ziem Nascimento, Ana L S Silva, Germanna Lima Righetto, Liron Bar-Peled, Kuang Shen, David M. Sabatini, Fábio C. Gozzo, Ricardo Aparício, Juliana Helena Costa Smetana
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.00311

Modelling dynamics in protein crystal structures by ensemble refinement
Cited by: 242
Author(s): B. Tom Burnley, Pavel V. Afonine, Paul D. Adams, Piet Gros
Software Mentions: 4
Published: almost 12 years ago

10.1107/S1399004713032549

Ensemble refinement shows conformational flexibility in crystal structures of human complement factor D
Cited by: 29
Author(s): Federico Forneris, B. Tom Burnley, Piet Gros
Software Mentions: 4
Published: almost 11 years ago

10.1107/S2059798318017795

<i>ZOO</i>: an automatic data-collection system for high-throughput structure analysis in protein microcrystallography
Cited by: 134
Author(s): Kunio Hirata, Keitaro Yamashita, Go Ueno, Yoshiaki Kawano, Kazuya Hasegawa, Takashi Kumasaka, Masaki Yamamoto
Software Mentions: 4
Published: almost 6 years ago

10.7554/eLife.32481

Molecular structure of human KATP in complex with ATP and ADP
Cited by: 127
Author(s): Kenneth Pak Kin Lee, Jue Chen, Roderick MacKinnon
Software Mentions: 4
Published: almost 7 years ago

10.7554/eLife.18227

Mechanism for nuclease regulation in RecBCD
Cited by: 34
Author(s): M. K. Wilkinson, Yuriy Chaban, Dale B. Wigley
Software Mentions: 4
Published: about 8 years ago

10.1107/S2052252517008557

Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
Cited by: 22
Author(s): Keitaro Yamashita, N. Kuwabara, Takanori Nakane, Taichi Murai, Eiichi Mizohata, Michihiro Sugahara, Dongqing Pan, Tetsuya Masuda, Mamoru Suzuki, Tomomi Satō, Atsushi Kodan, Tomohiro Yamaguchi, Eriko Nango, Tomoyuki Tanaka, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Hiroshi Manya, Tamao Endo, Ryuichi Kato, Toshiya Senda, Hiroaki Katô, So Iwata, Hideo Ago, Masaki Yamamoto, Fumiaki Yumoto, Toru Nakatsu
Software Mentions: 4
Published: over 7 years ago

10.1038/srep24019

Multiple oligomeric structures of a bacterial small heat shock protein
Cited by: 25
Author(s): Nandini Mani, Spraha Bhandari, Rodolfo Moreno, Liya Hu, B. V. Venkataram Prasad, K. Suguna
Software Mentions: 4
Published: over 8 years ago

10.7554/eLife.36629

Structure of the CLC-1 chloride channel from Homo sapiens
Cited by: 80
Author(s): Eunyong Park, Roderick MacKinnon
Software Mentions: 4
Published: over 6 years ago

10.1126/sciadv.abg9923

Structure of the mycobacterial ESX-5 type VII secretion system pore complex
Cited by: 38
Author(s): Katherine S. H. Beckham, Christina Ritter, Grzegorz Chojnowski, Daniel S. Ziemianowicz, Edukondalu Mullapudi, Mandy Rettel, Mikhail M. Savitski, Simon A. Mortensen, Jan Kosiński, Matthias Wilmanns
Software Mentions: 4
Published: over 3 years ago

10.1128/JVI.01664-19

Structure of Merkel Cell Polyomavirus Capsid and Interaction with Its Glycosaminoglycan Attachment Receptor
Cited by: 12
Author(s): Niklas Johannes Bayer, Dovile Januliene, Georg Zocher, Thilo Stehle, Arne Moeller, Bärbel S. Blaum
Software Mentions: 3
Published: about 4 years ago

10.1107/S0907444912001308

Towards automated crystallographic structure refinement with <i>phenix.refine</i>
Cited by: 4,334
Author(s): Pavel V. Afonine, Ralf W. Grosse‐Kunstleve, Nathaniel Echols, Jeffrey J. Headd, Nigel W. Moriarty, Marat Mustyakimov, Thomas C. Terwilliger, Alexandre Urzhumtsev, Peter H. Zwart, Paul D. Adams
Software Mentions: 3
Published: over 12 years ago

10.1107/S090744491104978X

Application of DEN refinement and automated model building to a difficult case of molecular-replacement phasing: the structure of a putative succinyl-diaminopimelate desuccinylase from <i>Corynebacterium glutamicum</i>
Cited by: 26
Author(s): Axel T. Brunger, Debanu Das, Ashley M. Deacon, Joanna C Grant, Thomas C. Terwilliger, Randy J. Read, Paul D. Adams, Michael Levitt, Gunnar F. Schröder
Software Mentions: 3
Published: over 12 years ago

10.1107/S0907444909022707

Polarizable atomic multipole X-ray refinement: application to peptide crystals
Cited by: 48
Author(s): Michael J. Schnieders, Timothy D. Fenn, Vijay S. Pande, Axel T. Brunger
Software Mentions: 3
Published: over 15 years ago

10.1016/j.molcel.2020.04.012

Cryo-EM Structure of the Fork Protection Complex Bound to CMG at a Replication Fork
Cited by: 100
Author(s): Domagoj Baretić, Michael Jenkyn-Bedford, Valentina Aria, Giuseppe Cannone, Mark Skehel, Joseph T.P. Yeeles
Software Mentions: 3
Published: over 4 years ago

10.1007/s11103-020-01052-5

Structural insights into Arabidopsis ethylene response factor 96 with an extended N-terminal binding to GCC box
Cited by: 12
Author(s): Chun‐Yen Chen, Pei‐Hsuan Lin, Kun-Hung Chen, Yi-Sheng Cheng
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0156067

Crystal Structures of Putative Sugar Kinases from Synechococcus Elongatus PCC 7942 and Arabidopsis Thaliana
Cited by: 0
Author(s): Yuan Xie, Li Mei, Wenrui Chang
Software Mentions: 3
Published: over 8 years ago

10.1016/j.cell.2018.11.025

The Molecular Mechanism of Transport by the Mitochondrial ADP/ATP Carrier
Cited by: 206
Author(s): Jonathan J. Ruprecht, Martin King, Thomas Zögg, Antoniya A. Aleksandrova, Els Pardon, Paul G. Crichton, Jan Steyaert, Edmund R. S. Kunji
Software Mentions: 3
Published: almost 6 years ago

10.1038/srep22108

Insight into Coenzyme A cofactor binding and the mechanism of acyl-transfer in an acylating aldehyde dehydrogenase from Clostridium phytofermentans
Cited by: 18
Author(s): Laura Tuck, Kirsten Altenbach, Thiau Fu Ang, Adam Crawshaw, Dominic J. Campopiano, David J. Clarke, Jon Marles‐Wright
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-019-39641-0

Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H
Cited by: 13
Author(s): Chang Woo Lee, Sun Ha Park, Chang-Sung Jeong, Sun Mi Shin, Hyun Park, Jun Hyuck Lee
Software Mentions: 3
Published: over 5 years ago

10.1107/S2052252519007619

<i>Namdinator</i> – automatic molecular dynamics flexible fitting of structural models into cryo-EM and crystallography experimental maps
Cited by: 242
Author(s): Rune T. Kidmose, Jonathan Juhl, Poul Nissen, Thomas Boesen, Jesper Lykkegaard Karlsen, Bjørn Panyella Pedersen
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.59018

Structural ordering of the Plasmodium berghei circumsporozoite protein repeats by inhibitory antibody 3D11
Cited by: 10
Author(s): Iga Kucharska, Elaine Thai, Ananya Srivastava, John L. Rubinstein, Régis Pomès, Jean-Philippe Julien
Software Mentions: 3
Published: almost 4 years ago

10.7554/eLife.27829

Structure-based analysis of CysZ-mediated cellular uptake of sulfate
Cited by: 9
Author(s): Zahra Assur Sanghai, Qun Liu, Oliver B Clarke, Meagan Belcher Dufrisne, Pattama Wiriyasermkul, Maria Giese, Edgar Leal-Pinto, Brian Kloss, Shantelle Tabuso, J. Love, Marco Punta, Surajit Banerjee, Kanagalaghatta R. Rajashankar, Burkhard Rost, Diomedes E. Logothetis, Matthias Quick, Wayne A. Hendrickson, Filippo Mancia
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.46417

Mechanism of pharmacochaperoning in a mammalian KATP channel revealed by cryo-EM
Cited by: 58
Author(s): Gregory M. Martin, Min Woo Sung, Zhongying Yang, Laura Innes, Krishnaswamy Balamurugan, Larry L. David, Craig Yoshioka, Show Ling Shyng
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.52983

The structure of the endogenous ESX-3 secretion system
Cited by: 53
Author(s): Nicole Poweleit, Nadine Czudnochowski, Rachel Nakagawa, Donovan Trinidad, Kenan C. Murphy, Christopher M. Sassetti, Oren S. Rosenberg
Software Mentions: 3
Published: almost 5 years ago

10.1098/rsob.160292

Structural, mechanistic and functional insight into gliotoxin <i>bis</i> -thiomethylation in <i>Aspergillus fumigatus</i>
Cited by: 32
Author(s): Stephen K. Dolan, Thomas Böck, Vanessa Hering, Rebecca A. Owens, Gary W. Jones, Wulf Blankenfeldt, Seán Doyle
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.ppat.1005194

Phospho-dependent Regulation of SAMHD1 Oligomerisation Couples Catalysis and Restriction
Cited by: 90
Author(s): Laurence H. Arnold, Harriet C. T. Groom, Simone Kunzelmann, David Schwefel, Sarah J. Caswell, Paula Ordonez, Melanie C. Mann, Sabrina Rueschenbaum, David C. Goldstone, Simon Pennell, Steven Howell, Jonathan P. Stoye, Michelle Webb, Ian A. Taylor, Kate N. Bishop
Software Mentions: 2
Published: about 9 years ago

10.1007/s13238-016-0346-6

4.4 Å Resolution Cryo-EM structure of human mTOR Complex 1
Cited by: 65
Author(s): Huirong Yang, Jia Wang, Mengjie Liu, Xizi Chen, Min Huang, Dan Tan, Meng‐Qiu Dong, Catherine C. L. Wong, Jiawei Wang, Yanhui Xu, Hongwei Wang
Software Mentions: 2
Published: almost 8 years ago

10.1017/S0033583515000207

Structural basis underlying CAC RNA recognition by the RRM domain of dimeric RNA-binding protein RBPMS
Cited by: 38
Author(s): M. Teplova, Thalia A. Farazi, Thomas Tuschl, Dinshaw J. Patel
Software Mentions: 2
Published: about 9 years ago

10.1038/s42003-020-01160-4

Human adiponectin receptor AdipoR1 assumes closed and open structures
Cited by: 13
Author(s): Hiroaki Tanabe, Yuki Fujii, Miki Okada-Iwabu, Masato Iwabu, Kuniyuki Kano, Hiroki Kawana, Masakatsu Hato, Yoshihiro Nakamura, Takaho Terada, Tomomi Kimura-Someya, Mikako Shirouzu, Yoshiaki Kawano, Masaki Yamamoto, Junken Aoki, Toshimasa Yamauchi, Takashi Kadowaki, Shigeyuki Yokoyama
Software Mentions: 2
Published: over 4 years ago

10.1107/S0907444911047834

Use of knowledge-based restraints in <i>phenix.refine</i> to improve macromolecular refinement at low resolution
Cited by: 213
Author(s): Jeffrey J. Headd, Nathaniel Echols, Pavel V. Afonine, Ralf W. Grosse‐Kunstleve, Vincent B. Chen, Nigel W. Moriarty, David C. Richardson, Jane S. Richardson, Paul D. Adams
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0128225

Structural and Biochemical Characterization of the Francisella tularensis Pathogenicity Regulator, Macrophage Locus Protein A (MglA)
Cited by: 8
Author(s): Bonnie J. Cuthbert, Richard G. Brennan, Maria A. Schumacher
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-021-90472-4

Single tryptophan Y160W mutant of homooligomeric E. coli purine nucleoside phosphorylase implies that dimers forming the hexamer are functionally not equivalent
Cited by: 3
Author(s): Marta Narczyk, Łukasz Mioduszewski, Aleksandra Oksiejuk, Maria Winiewska-Szajewska, Beata Wielgus‐Kutrowska, Adrian Gojdź, Joanna Cieśla, Agnieszka Bzowska
Software Mentions: 2
Published: over 3 years ago

10.1063/1.5053466

Conformation-specific detection of calmodulin binding using the unnatural amino acid p-azido-phenylalanine (AzF) as an IR-sensor
Cited by: 10
Author(s): Anne Creon, Inokentijs Josts, Stephan Niebling, Nils Huse, Henning Tidow
Software Mentions: 2
Published: about 6 years ago

10.1107/S205979832001061X

Density modification of cryo-EM maps
Cited by: 24
Author(s): Thomas C. Terwilliger, Oleg V. Sobolev, Pavel V. Afonine, Paul D. Adams, Randy J. Read
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.07574

Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography
Cited by: 140
Author(s): D.A. Keedy, Lukas Kenner, Matthew Warkentin, R.A. Woldeyes, Jesse B. Hopkins, Michael C. Thompson, Aaron S. Brewster, A.H. Van Benschoten, E.L. Baxter, Monarin Uervirojnangkoorn, S.E. McPhillips, Jianguo Song, Roberto Alonso-Mori, James M. Holton, William I. Weis, Axel T. Brunger, S. Michael Soltis, Henrik T. Lemke, Ana González, Nicholas K. Sauter, Aina E. Cohen, Henry van den Bedem, Robert Thorne, James S. Fraser
Software Mentions: 2
Published: about 9 years ago

10.7554/eLife.45185

Conformational switches control early maturation of the eukaryotic small ribosomal subunit
Cited by: 32
Author(s): Mirjam Hunziker, Jonas Barandun, Olga Buzovetsky, Caitlin Steckler, Henrik Molina, Sebastian Klinge
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.71474

TMEM120A contains a specific coenzyme A-binding site and might not mediate poking- or stretch-induced channel activities in cells
Cited by: 18
Author(s): Yao Chai Rong, Jinghui Jiang, Yongfei Gao, Jing Guo, Danfeng Song, Wenhao Liu, Mingmin Zhang, Yan Zhao, Bailong Xiao, Zhongfan Liu
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.53322

Structure and activation mechanism of the BBSome membrane protein trafficking complex
Cited by: 57
Author(s): Sandeep Singh, Miao Gui, Fujiet Koh, M.C.J. Yip, Alan Brown
Software Mentions: 2
Published: almost 5 years ago

10.7554/eLife.56862

Mechanical inhibition of isolated Vo from V/A-ATPase for proton conductance
Cited by: 11
Author(s): Jun-ichi Kishikawa, Atsuko Nakanishi, Aya Furuta, Takayuki Kato, Keiichi Namba, Masatada Tamakoshi, Kaoru Mitsuoka, Ken Yokoyama
Software Mentions: 2
Published: over 4 years ago

10.1107/S2059798315022408

A new default restraint library for the protein backbone in<i>Phenix</i>: a conformation-dependent geometry goes mainstream
Cited by: 36
Author(s): Nigel W. Moriarty, Dale E. Tronrud, Paul D. Adams, P.A. Karplus
Software Mentions: 2
Published: almost 9 years ago

10.7554/eLife.55954

Near-atomic structures of the BBSome reveal the basis for BBSome activation and binding to GPCR cargoes
Cited by: 32
Author(s): Shuang Yang, Kriti Bahl, Hui‐Ting Chou, Jonathan Woodsmith, Ulrich Stelzl, Thomas Walz, Maxence V. Nachury
Software Mentions: 2
Published: over 4 years ago

10.12688/f1000research.13612.2

Crystal structures of a llama VHH antibody BCD090-M2 targeting human ErbB3 receptor
Cited by: 7
Author(s): Igor E. Eliseev, Anna Yudenko, Vera Vysochinskaya, Anna Svirina, Anna V. Evstratyeva, Maria S. Drozhzhachih, Elena A. Krendeleva, Anna Vladimirova, T.A. Nemankin, Viktoria M. Ekimova, А. Б. Улитин, Maria I. Lomovskaya, Pavel Yakovlev, Anton Bukatin, Nickolay A. Knyazev, Fedor Moiseenko, Oleg B. Chakchir
Software Mentions: 2
Published: over 6 years ago

10.1038/s42003-018-0167-7

Loss of a conserved salt bridge in bacterial glycosyl hydrolase BgIM-G1 improves substrate binding in temperate environments
Cited by: 8
Author(s): Dipali Mhaindarkar, Raphael Gasper, Natalie Lupilov, Eckhard Hofmann, Lars I. Leichert
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2021.669220

Interrogating the Role of the Two Distinct Fructose-Bisphosphate Aldolases of Bacillus methanolicus by Site-Directed Mutagenesis of Key Amino Acids and Gene Repression by CRISPR Interference
Cited by: 6
Author(s): Kerstin Schultenkämper, Desirée D. Gütle, Marina Gil López, Laura B. Keller, Lin Zhang, Oliver Einsle, Jean‐Pierre Jacquot, Volker F. Wendisch
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2019.00326

The Antimicrobials Anacardic Acid and Curcumin Are Not-Competitive Inhibitors of Gram-Positive Bacterial Pathogenic Glyceraldehyde-3-Phosphate Dehydrogenase by a Mechanism Unrelated to Human C5a Anaphylatoxin Binding
Cited by: 8
Author(s): Sara Gómez, Javier Querol-García, G. Sanchez-Barron, Marta Subías, Alex González-Alsina, V. Franco-Hidalgo, Sebastián Albertí, Santiago Rodrı́guez de Córdoba, Francisco Fernández, M. Cristina Vega
Software Mentions: 2
Published: over 5 years ago

10.1107/S1600576719012846

High-viscosity sample-injection device for serial femtosecond crystallography at atmospheric pressure
Cited by: 38
Author(s): Yoshiaki Shimazu, Kensuke Tono, Tomoyuki Tanaka, Y. Yamanaka, Takanori Nakane, Chihiro Mori, Kanako Kimura, Takaaki Fujiwara, Michihiro Sugahara, Rie Tanaka, R. Bruce Doak, Tatsuro Shimamura, So Iwata, Eriko Nango, Makina Yabashi
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.ppat.1002859

Structural Bases of Coronavirus Attachment to Host Aminopeptidase N and Its Inhibition by Neutralizing Antibodies
Cited by: 156
Author(s): Juan Reguera, César Santiago, Gaurav Mudgal, Desiderio Ordoño, Luis Enjuanes, José M. Casasnovas
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.ppat.1003631

Atomic Resolution Description of the Interaction between the Nucleoprotein and Phosphoprotein of Hendra Virus
Cited by: 69
Author(s): Guillaume Communie, Johnny Habchi, Filip Yabukarski, David Blocquel, Robert Schneider, Nicolas Tarbouriech, Nicolas Papageorgiou, Rob W.H. Ruigrok, Marc Jamin, Malene Ringkjøbing Jensen, Sonia Longhi, Martin Blackledge
Software Mentions: 1
Published: about 11 years ago

10.1107/S1399004714003277

Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement
Cited by: 18
Author(s): Jeffrey J. Headd, Nathaniel Echols, Pavel V. Afonine, Nigel W. Moriarty, Richard J. Gildea, Paul D. Adams
Software Mentions: 1
Published: over 10 years ago

10.1186/s12915-020-00889-y

Two conformations of DNA polymerase D-PCNA-DNA, an archaeal replisome complex, revealed by cryo-electron microscopy
Cited by: 5
Author(s): Kouta Mayanagi, Keisuke Oki, Naoyuki Miyazaki, Sonoko Ishino, Takeshi Yamagami, Kosuke Morikawa, Katsunori Iwasaki, Daisuke Kohda, Tomoyuki Shirai, Yuji Ishino
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.44239

The structure of the Ctf19c/CCAN from budding yeast
Cited by: 67
Author(s): Stephen M. Hinshaw, Stephen C. Harrison
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.celrep.2019.07.104

Molecular Basis for ATP-Hydrolysis-Driven DNA Translocation by the CMG Helicase of the Eukaryotic Replisome
Cited by: 72
Author(s): Patrik Eickhoff, Hazal B. Kose, Fabrizio Martino, Tatjana Petojevic, Ferdos Abid Ali, Julia Locke, Nele Tamberg, Andrea Nans, James M. Berger, Michael R. Botchan, Hasan Yardimci, Alessandro Costa
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.38770

Structure of mouse protocadherin 15 of the stereocilia tip link in complex with LHFPL5
Cited by: 61
Author(s): Jingpeng Ge, Johannes Elferich, April Goehring, Huaying Zhao, Peter Schuck, Eric Gouaux
Software Mentions: 1
Published: over 6 years ago

10.1107/S2059798320016071

C-phycocyanin as a highly attractive model system in protein crystallography: unique crystallization properties and packing-diversity screening
Cited by: 5
Author(s): Iosifina Sarrou, C. Feiler, Sven Falke, Nolan Peard, Oleksandr Yefanov, Henry N. Chapman
Software Mentions: 1
Published: almost 4 years ago

10.1038/srep29283

The different effects of twin boundary and grain boundary on reducing tension-compression yield asymmetry of Mg alloys
Cited by: 36
Author(s): Huihui Yu, Yunchang Xin, Adrien Chapuis, Xiaoxu Huang, Renlong Xin, Qing Liu
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.03351

A Ras-like domain in the light intermediate chain bridges the dynein motor to a cargo-binding region
Cited by: 82
Author(s): Courtney M. Schroeder, J.M. Ostrem, Nicholas T. Hertz, Ronald D. Vale
Software Mentions: 1
Published: about 10 years ago

10.1107/S1600577516016775

OH cleavage from tyrosine: debunking a myth
Cited by: 18
Author(s): C.S. Bury, Ian Carmichael, Elspeth F. Garman
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-021-89446-3

Structural and phylogenetic analyses of resistance to next-generation aminoglycosides conferred by AAC(2′) enzymes
Cited by: 7
Author(s): Angelia V. Bassenden, Linda Dumalo, Jae-Ok Park, Jonathan Blanchet, Krishnagopal Maiti, Dev P. Arya, A.M. Berghuis
Software Mentions: 1
Published: over 3 years ago

10.1186/s13029-018-0068-7

SOV_refine: A further refined definition of segment overlap score and its significance for protein structure similarity
Cited by: 12
Author(s): Tong Liu, Zheng Wang
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.48528

Ternary structure of the outer membrane transporter FoxA with resolved signalling domain provides insights into TonB-mediated siderophore uptake
Cited by: 42
Author(s): Inokentijs Josts, Katharina Veith, Henning Tidow
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00996-20

Cryo-EM Structures of a Gonococcal Multidrug Efflux Pump Illuminate a Mechanism of Drug Recognition and Resistance
Cited by: 47
Author(s): Meinan Lyu, Mitchell A. Moseng, Jennifer L. Reimche, Concerta L. Holley, Vijaya Dhulipala, Chih‐Chia Su, William M. Shafer, Edward Yu
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0128199

The Crystal Structure of Thermotoga maritima Class III Ribonucleotide Reductase Lacks a Radical Cysteine Pre-Positioned in the Active Site
Cited by: 10
Author(s): Oskar Aurelius, Renzo Johansson, Viktoria Bågenholm, Daniel Lundin, Fredrik Tholander, Alexander Balhuizen, Tobias Beck, Margareta Sahlin, Britt‐Marie Sjöberg, Etienne Mulliez, D.T. Logan
Software Mentions: 1
Published: over 9 years ago

10.1107/S2059798321001145

Adaptive Cartesian and torsional restraints for interactive model rebuilding
Cited by: 10
Author(s): Tristan I. Croll, Randy J. Read
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules23030634

Increasing Polarity in Tacrine and Huprine Derivatives: Potent Anticholinesterase Agents for the Treatment of Myasthenia Gravis
Cited by: 26
Author(s): Carles Galdeano, Nicolas Coquelle, Monika Cieslikiewicz-Bouet, Manuela Bartolini, Belén Pérez, M. Victòria Clos, Israel Silman, Ludovic Jean, J.P. Colletier, Pierre Renard, Diego Muñoz‐Torrero
Software Mentions: 1
Published: over 6 years ago

10.1107/S2052252519013137

Toward G protein-coupled receptor structure-based drug design using X-ray lasers
Cited by: 50
Author(s): Andrii Ishchenko, Benjamin Stauch, Gye Won Han, A. Batyuk, Anna Shiriaeva, Chufeng Li, Nadia A. Zatsepin, Uwe Weierstall, Wei Liu, Eriko Nango, Takanori Nakane, Rie Tanaka, Kensuke Tono, Yasumasa Joti, So Iwata, Isabel Moraes, Cornelius Gati, Vadim Cherezov
Software Mentions: 1
Published: about 5 years ago

10.1107/S2052252521005340

X-ray crystallographic studies of RoAb13 bound to PIYDIN, a part of the N-terminal domain of C-C chemokine receptor 5
Cited by: 2
Author(s): Lata Govada, Emmanuel Saridakis, Sean Kassen, Ahmad Bin-Ramzi, Rhodri M. L. Morgan, Benjamin M. Chain, John R. Helliwell, Naomi E. Chayen
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2019.01829

Crystal Structure of Refolding Fusion Core of Lassa Virus GP2 and Design of Lassa Virus Fusion Inhibitors
Cited by: 10
Author(s): Xuejiao Zhang, Cong Wang, Baohua Chen, Qian Wang, Wei Xu, Sheng Ye, Shibo Jiang, Yun Zhu, Rongguang Zhang
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.23043

Structural insights into the molecular mechanisms of myasthenia gravis and their therapeutic implications
Cited by: 20
Author(s): Kaori Noridomi, Go Watanabe, Melissa N Hansen, Gye Won Han, Lin Chen
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.22963

Structural basis for the inhibition of RecBCD by Gam and its synergistic antibacterial effect with quinolones
Cited by: 43
Author(s): M. K. Wilkinson, Lucy Troman, Wan Ak Wan Nur Ismah, Yuriy Chaban, Matthew B. Avison, Mark S. Dillingham, Dale B. Wigley
Software Mentions: 1
Published: almost 8 years ago