bioconductor: ropls | Projects | Ecosyste.ms: Papers

10.3390/metabo9100200

The metaRbolomics Toolbox in Bioconductor and beyond
Cited by: 61
Author(s): Jan Stanstrup, Corey D. Broeckling, Rick Helmus, Nils Hoffmann, Ewy A. Mathé, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Michael Rainer, Reza M. Salek, Tobias Schulze, Emma L. Schymanski, Michael A. Stravs, Etienne Thévenot, Hendrik Treutler, Ralf Weber, Egon Willighagen, Michael Witting, Steffen Neumann
Software Mentions: 92
Published: almost 5 years ago

10.3389/fonc.2020.00423

Computational Oncology in the Multi-Omics Era: State of the Art
Cited by: 55
Author(s): Guillermo de Anda-Jáuregui, Enrique Hernández‐Lemus
Software Mentions: 46
Published: over 4 years ago

10.1128/mSystems.00404-19

Effects of Antibiotic Pretreatment of an Ulcerative Colitis-Derived Fecal Microbial Community on the Integration of Therapeutic Bacteria In Vitro
Cited by: 13
Author(s): Kaitlyn Oliphant, Kyla Cochrane, Kathleen Schroeter, Michelle Daigneault, Sandi Yen, Elena F. Verdú, Emma Allen‐Vercoe
Software Mentions: 11
Published: over 4 years ago

10.1016/j.isci.2021.102882

Integrated analysis of glycan and RNA in single cells
Cited by: 22
Author(s): Fumi Minoshima, Haruka Ozaki, Haruki Odaka, Hiroaki Tateno
Software Mentions: 11
Published: about 3 years ago

10.1186/s12859-017-1579-y

metaX: a flexible and comprehensive software for processing metabolomics data
Cited by: 402
Author(s): Bo Wen, Zhanlong Mei, Chunwei Zeng, Siqi Liu
Software Mentions: 11
Published: over 7 years ago

10.1016/j.isci.2021.102768

Spatially resolved sampling for untargeted metabolomics: A new tool for salivomics
Cited by: 4
Author(s): Alessio Ciurli, Maximiliam Liebl, Rico Derks, Jacques Neefjes, Martin Giera
Software Mentions: 10
Published: about 3 years ago

10.3390/md18060313

A Metabolomics Exploration of the Sexual Phase in the Marine Diatom Pseudo-nitzschia multistriata
Cited by: 15
Author(s): Federica Fiorini, Camilla Borgonuovo, Maria Immacolata Ferrante, Mark Brönstrup
Software Mentions: 8
Published: over 4 years ago

10.1242/dmm.046995

Head-to-head study of oxelumab and adalimumab in a mouse model of ulcerative colitis based on NOD/Scid IL2Rγnull mice reconstituted with human peripheral blood mononuclear cells
Cited by: 7
Author(s): Henrika Jodeleit, Paula Winkelmann, J Caesar, Sebastian Sterz, Lesca M. Holdt, Florian Beigel, Johannes Stallhofer, Simone Breiteneicher, Eckart Bartnik, Thomas Leeuw, Matthias Siebeck, Roswitha Gropp
Software Mentions: 8
Published: over 3 years ago

10.1186/s40813-021-00219-w

Using nontargeted LC-MS metabolomics to identify the Association of Biomarkers in pig feces with feed efficiency
Cited by: 10
Author(s): Jie Wu, Yong Ye, Jianping Quan, Rongrong Ding, Xingwang Wang, Zhanwei Zhuang, Shenping Zhou, Qian Geng, Cineng Xu, Linjun Hong, Zheng Xu, Enqin Zheng, Guangyan Cai, Zhenfang Wu, Jie Yang
Software Mentions: 7
Published: over 3 years ago

10.3389/fchem.2021.659656

iMAP: A Web Server for Metabolomics Data Integrative Analysis
Cited by: 4
Author(s): Di Zhou, Wen-Hong Zhu, Tao Sun, Yang Wang, Yi Chi, Tianlu Chen, Jingchao Lin
Software Mentions: 6
Published: over 3 years ago

10.1002/ece3.5690

Genetic divergence and phenotypic plasticity contribute to variation in cuticular hydrocarbons in the seaweed fly Coelopa frigida
Cited by: 9
Author(s): Emma L. Berdan, Swantje Enge, Göran M. Nylund, Maren Wellenreuther, Gerrit A. Martens, Henrik Pavia
Software Mentions: 6
Published: almost 5 years ago

10.1016/j.isci.2021.103048

Post-weaning A1/A2 β-casein milk intake modulates depressive-like behavior, brain μ-opioid receptors, and the metabolome of rats
Cited by: 5
Author(s): Aya Osman, Simone Zuffa, Gemma Walton, Elizabeth Fagbodun, Panos Zanos, Polymnia Georgiou, Ian Kitchen, Jonathan R. Swann, Alexis Bailey
Software Mentions: 5
Published: about 3 years ago

10.1016/j.csbj.2019.04.009

Accounting for biological variation with linear mixed-effects modelling improves the quality of clinical metabolomics data
Cited by: 26
Author(s): Kwanjeera Wanichthanarak, Saharuetai Jeamsripong, Natapol Pornputtapong, Sakda Khoomrung
Software Mentions: 5
Published: over 5 years ago

10.1172/jci.insight.149257

Cervicovaginal microbiota and metabolome predict preterm birth risk in an ethnically diverse cohort
Cited by: 27
Author(s): Flavia Flaviani, Natasha L. Hezelgrave, Tokuwa Kanno, Erica M. Prosdocimi, Evonne Chin-Smith, Alexandra Ridout, Djuna K von Maydell, Vikash Mistry, William Wade, Andrew Shennan, Konstantina Dimitrakopoulou, Paul Seed, A. James Mason, Rachel Tribe
Software Mentions: 5
Published: about 3 years ago

10.1093/braincomms/fcab084

Integrative biochemical, proteomics and metabolomics cerebrospinal fluid biomarkers predict clinical conversion to multiple sclerosis
Cited by: 13
Author(s): Fay Probert, Tianrong Yeo, Yifan Zhou, Megan Sealey, Siddharth Arora, Jacqueline Palace, Timothy D. W. Claridge, Rainer Hillenbrand, Johanna Oechtering, David Leppert, Jens Kühle, D C Anthony
Software Mentions: 5
Published: over 3 years ago

10.3390/jpm10040271

Identification of Metabolic Biomarkers in Relation to Methotrexate Response in Early Rheumatoid Arthritis
Cited by: 13
Author(s): Helen R. Gosselt, Ittai B. Muller, Gerrit Jansen, Michel van Weeghel, Frédéric M. Vaz, Johanna M. W. Hazes, Sandra G. Heil, Robert de Jonge
Software Mentions: 5
Published: almost 4 years ago

10.1093/sleep/zsab035

Sleep health and cognitive function among people with and without HIV: the use of different machine learning approaches
Cited by: 10
Author(s): Davide De Francesco, Caroline Sabin, Alan Winston, Michael Rueschman, Nicki Doyle, Jane Anderson, Jaime H. Vera, Marta Boffito, Memory Sachikonye, Patrick Mallon, Lewis Haddow, Frank A. Post, Susan Redline, Ken M. Kunisaki
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2021.681185

Evaluation of the Relationships Between Microbiota and Metabolites in Soft-Type Ripened Cheese Using an Integrated Omics Approach
Cited by: 9
Author(s): Ryosuke Unno, Toshihiro Suzuki, Minenosuke Matsutani, Morio Ishikawa
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2020.00641

Functional Analysis of Sugars in Modulating Bacterial Communities and Metabolomics Profiles of Medicago sativa Silage
Cited by: 14
Author(s): Bing Wang, Run Gao, Zhaohai Wu, Zhu Yu
Software Mentions: 4
Published: over 4 years ago

10.1186/s12859-021-04235-z

Putative markers for the detection of early-stage bladder cancer selected by urine metabolomics
Cited by: 11
Author(s): Jia You Lin, Bao Rong Juo, Yu Hsuan Yeh, Shu Hsuan Fu, Yi Ting Chen, Chien Lun Chen, Kun Wu
Software Mentions: 4
Published: over 3 years ago

10.1186/s42523-021-00103-6

Metagenomics analysis revealed the distinctive ruminal microbiome and resistive profiles in dairy buffaloes
Cited by: 10
Author(s): Hui-Zeng Sun, Ke-Lan Peng, Mingyuan Xue, Jianxin Liu
Software Mentions: 4
Published: about 3 years ago

10.1186/s40168-021-01046-5

Androgen-induced gut dysbiosis disrupts glucolipid metabolism and endocrinal functions in polycystic ovary syndrome
Cited by: 39
Author(s): Qixin Han, Juan Wang, Weiping Li, Zi‐Jiang Chen, Yanzhi Du
Software Mentions: 4
Published: over 3 years ago

10.3390/metabo11060407

Statistical Integration of ‘Omics Data Increases Biological Knowledge Extracted from Metabolomics Data: Application to Intestinal Exposure to the Mycotoxin Deoxynivalenol
Cited by: 3
Author(s): Marie Tremblay-Franco, Cécile Canlet, Philippe Pinton, Yannick Lippi, Roselyne Gautier, Claire Naylies, Manon Neves, Isabelle P. Oswald, Laurent Debrauwer, Imourana Alassane-Kpémbi
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0198156

Time course metabolome of Roux-en-Y gastric bypass confirms correlation between leptin, body weight and the microbiome
Cited by: 14
Author(s): Loqmane Seridi, Gregory C. Leo, G. Lynis Dohm, Walter J. Pories, James M. Lenhard
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-021-85455-4

Aging selectively dampens oscillation of lipid abundance in white and brown adipose tissue
Cited by: 12
Author(s): Ntsiki M. Held, M. Renate Buijink, Hyung L. Elfrink, Sander Kooijman, Georges E. Janssens, Angela C. M. Luyf, Mia L. Pras‐Raves, Frédéric M. Vaz, Stephan Michel, Riekelt H. Houtkooper, Michel van Weeghel
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-92112-3

Lipidomics study of plasma from patients suggest that ALS and PLS are part of a continuum of motor neuron disorders
Cited by: 23
Author(s): Estela Area‐Gómez, Delfina Larrea, Tack Su Yun, Yimeng Xu, Jonathan Hupf, Fereshteh Zandkarimi, Robin B. Chan, Hiroshi Mitsumoto
Software Mentions: 3
Published: about 3 years ago

10.1007/s11306-016-1109-3

Does centrifugation matter? Centrifugal force and spinning time alter the plasma metabolome
Cited by: 30
Author(s): Dorothea Lesche, Roland Geyer, Daniel Lienhard, Christos T. Nakas, Gaëlle Diserens, Peter Vermathen, Alexander Benedikt Leichtle
Software Mentions: 3
Published: about 8 years ago

10.1186/s40168-019-0738-y

Batch effect exerts a bigger influence on the rat urinary metabolome and gut microbiota than uraemia: a cautionary tale
Cited by: 16
Author(s): David Randall, Julius Kieswich, Jonathan R. Swann, Kieran McCafferty, Christoph Thiemermann, Michael A. Curtis, Lesley Hoyles, M. Yaqoob
Software Mentions: 3
Published: about 5 years ago

10.18632/aging.104004

Integrated analysis of transcriptomic and metabolomic data demonstrates the significant role of pyruvate carboxylase in the progression of ovarian cancer
Cited by: 9
Author(s): Hongjing Shang, Jianfeng Zheng, Jinyi Tong
Software Mentions: 3
Published: almost 4 years ago

10.3390/molecules26020310

Analysis and Authentication of Avocado Oil Using High Resolution NMR Spectroscopy
Cited by: 17
Author(s): Fang Tang, Hilary S. Green, Selina C. Wang, Emmanuel Hatzakis
Software Mentions: 3
Published: over 3 years ago

10.3390/biomedicines8110469

Dietary Vitamin B6 Deficiency Impairs Gut Microbiota and Host and Microbial Metabolites in Rats
Cited by: 28
Author(s): Shyamchand Mayengbam, Faye Chleilat, Raylene A. Reimer
Software Mentions: 3
Published: almost 4 years ago

10.1042/BSR20202915

Lipid profiling of mouse intestinal organoids for studying APC mutations
Cited by: 3
Author(s): Zoë H. Jukes, Anne Freier, Maria Glymenaki, Richard C. D. Brown, Lee Parry, Elizabeth J. Want, Panagiotis A. Vorkas, Jia V. Li
Software Mentions: 3
Published: over 3 years ago

10.1016/j.exger.2018.10.003

Identification of key pathways and metabolic fingerprints of longevity in C. elegans
Cited by: 45
Author(s): Arwen W. Gao, Reuben L. Smith, Michel van Weeghel, Rashmi Kamble, Georges E. Janssens, Riekelt H. Houtkooper
Software Mentions: 3
Published: almost 6 years ago

10.1002/fsn3.1841

A comparative UPLC‐Q‐Orbitrap‐MS untargeted metabolomics investigation of different parts of Clausena lansium (Lour.) Skeels
Cited by: 15
Author(s): Ruiyi Fan, Cheng Peng, Xinxin Zhang, Diyang Qiu, Genlin Mao, Yusheng Lu, Jiwu Zeng
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2020.01362

Data-Independent Acquisition Proteomics Unravels the Effects of Iron Ions on Coronatine Synthesis in Pseudomonas syringae pv. tomato DC3000
Cited by: 5
Author(s): Yan He, Sha Yu, Shaojin Liu, Hao Tian, Chunxin Yu, Weiming Tan, Jie Zhang, Zhaohu Li, Feng Jiang, Liusheng Duan
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2021.687211

Gut Bacteria Associated With Monochamus saltuarius (Coleoptera: Cerambycidae) and Their Possible Roles in Host Plant Adaptations
Cited by: 18
Author(s): Si-Xun Ge, Fengming Shi, Jiahe Pei, Zehai Hou, Shixiang Zong, Lili Ren
Software Mentions: 3
Published: about 3 years ago

10.1002/cam4.1107

Comparative proteomic profiling of the serum differentiates pancreatic cancer from chronic pancreatitis
Cited by: 34
Author(s): Mayank Saraswat, Sakari Joenväärä, Hanna Seppänen, Harri Mustonen, Caj Haglund, Risto Renkonen
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-020-57468-y

Evidence of altered mucosa-associated and fecal microbiota composition in patients with Irritable Bowel Syndrome
Cited by: 33
Author(s): Johanna Sundin, Imran Aziz, Sofia Nordlander, Annikka Polster, Yue Hu, Luisa W. Hugerth, Alexandra Pennhag, Lars Engstrand, Hans Törnblom, Magnus Simrén, Lena Öhman
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2021.675480

Alterations of Serum Metabolites and Fecal Microbiota Involved in Ewe Follicular Cyst
Cited by: 3
Author(s): Tao Feng, Hongxiang Ding, Jing Wang, Wei Xu, Yan Liu, Ákos Kenéz
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-018-37547-x

Effects of defined gut microbial ecosystem components on virulence determinants of Clostridioides difficile
Cited by: 19
Author(s): Christian Carlucci, Carys S Jones, Kaitlyn Oliphant, Sandi Yen, Michelle Daigneault, Charley Carriero, Avery Robinson, Elaine O. Petrof, J. Scott Weese, Emma Allen‐Vercoe
Software Mentions: 2
Published: over 5 years ago

10.3390/metabo9090176

Comparison of Differential Flavor Metabolites in Meat of Lubei White Goat, Jining Gray Goat and Boer Goat
Cited by: 16
Author(s): Wei‐Ting Wang, Bei Sun, Peisong Hu, Meifang Zhou, Su-Jun Sun, Pengfei Du, Yi Ru, Alexander Suvorov, Yongsheng Li, Yaobo Liu, Shoujing Wang
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-69119-3

A blood-based metabolomics test to distinguish relapsing–remitting and secondary progressive multiple sclerosis: addressing practical considerations for clinical application
Cited by: 7
Author(s): Tianrong Yeo, Megan Sealey, Yifan Zhou, L. Saldaña, Samantha Loveless, Timothy D. W. Claridge, Neil Robertson, Gabriele C. DeLuca, Jacqueline Palace, Daniel C. Anthony, Fay Probert
Software Mentions: 2
Published: about 4 years ago

10.1186/s40478-017-0495-8

Metabolomics reveals distinct, antibody-independent, molecular signatures of MS, AQP4-antibody and MOG-antibody disease
Cited by: 35
Author(s): Maciej Juryńczyk, Fay Probert, Tianrong Yeo, George Tackley, Claridge Tdw., Ana Cavey, Mark Woodhall, Siddharth Arora, Till Winkler, Eric Schiffer, Angela Vincent, Gabriele C. DeLuca, Nicola R. Sibson, Maria Isabel Leite, Patrick Waters, Daniel C. Anthony, Jacqueline Palace
Software Mentions: 2
Published: almost 7 years ago

10.3389/fphys.2020.578799

Urine Metabolomics Analysis in Patients With Normoalbuminuric Diabetic Kidney Disease
Cited by: 12
Author(s): Qian Feng, Yuanmeng Li, Yuwei Yang, Jiafu Feng
Software Mentions: 2
Published: almost 4 years ago

10.3389/fphys.2019.00813

Trichoderma atroviride P1 Colonization of Tomato Plants Enhances Both Direct and Indirect Defense Barriers Against Insects
Cited by: 44
Author(s): Mariangela Coppola, Pasquale Cascone, Ilaria Di Lelio, Sheridan Lois Woo, Matteo Lorito, Rosa Rao, Francesco Pennacchio, Emilio Guerrieri, M. Cristina Digilio
Software Mentions: 2
Published: about 5 years ago

10.1155/2019/9526725

Characterization and Validation of an “Acute Aerobic Exercise Load” as a Tool to Assess Antioxidative and Anti-inflammatory Nutrition in Healthy Subjects Using a Statistically Integrated Approach in a Comprehensive Clinical Trial
Cited by: 1
Author(s): Youjin Kim, Sungkyoung Choi, Sung Young Lee, Saejong Park, Ji Yeon Kim, Taesung Park, Oran Kwon
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms21124568

Validation of Breast Cancer Margins by Tissue Spray Mass Spectrometry
Cited by: 7
Author(s): Vitaliy Chagovets, Natalia Starodubtseva, Alisa Tokareva, Vladimir Frankevich, В В Родионов, Kometova V.V. Kometova, Konstantin Chingin, Eugene Kukaev, Huanwen Chen, Г. Т. Сухих
Software Mentions: 2
Published: about 4 years ago

10.1080/19490976.2020.1854967

Gene variations in Autism Spectrum Disorder are associated with alternation of gut microbiota, metabolites and cytokines
Cited by: 24
Author(s): Zhi Li, Xuhua Mao, Dan Zhou, Peng Yang, Rui Xu, Mengchen Guo, Kangjian Liu, Faming Zhang, Junyu Chen, Chuan Su, Yaoyao Zhuang, Jun‐Ming Tang, Yankai Xia, Lianhong Qin, Zhibin Hu, Xingyin Liu
Software Mentions: 2
Published: over 3 years ago

10.1002/iid3.435

The PI3K pathway as a therapeutic intervention point in inflammatory bowel disease
Cited by: 4
Author(s): Paula Winkelmann, Anna‐Lena Unterweger, Diya Khullar, Florian Beigel, Leandra Koletzko, Matthias Siebeck, Roswitha Gropp
Software Mentions: 2
Published: over 3 years ago

10.1007/s10545-017-0114-7

Plasma lipidomics as a diagnostic tool for peroxisomal disorders
Cited by: 19
Author(s): Katharina Herzog, Mia L. Pras‐Raves, Sacha Ferdinandusse, Martin A. T. Vervaart, Angela C. M. Luyf, Antoine H. C. van Kampen, Ronald J. A. Wanders, Hans R. Waterham, Frédéric M. Vaz
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-80412-z

Targeted metabolomics analysis of postoperative delirium
Cited by: 17
Author(s): Bridget A. Tripp, Simon T. Dillon, Min Yuan, John M. Asara, Sarinnapha Vasunilashorn, Tamara G. Fong, Eran D. Metzger, Sharon K. Inouye, Zhongcong Xie, Long Ngo, Edward R. Marcantonio, Towia A. Libermann, Hasan H. Otu
Software Mentions: 2
Published: over 3 years ago

10.1093/ecco-jcc/jjy101

Plasma Nuclear Magnetic Resonance Metabolomics Discriminates Between High and Low Endoscopic Activity and Predicts Progression in a Prospective Cohort of Patients With Ulcerative Colitis
Cited by: 31
Author(s): Fay Probert, Alissa Walsh, Marta Jagielowicz, Tianrong Yeo, Claridge Tdw., Alison Simmons, Simon Travis, Daniel C. Anthony
Software Mentions: 2
Published: about 6 years ago

10.3390/ijerph18020710

Untargeted Urinary Metabolomics and Children’s Exposure to Secondhand Smoke: The Influence of Individual Differences
Cited by: 2
Author(s): Huiwei Zhu, Abu S. Abdullah, Jingyi He, Jianxiong Xi, Yimeng Mao, Yitian Feng, Qianyi Xiao, Pinpin Zheng
Software Mentions: 2
Published: over 3 years ago

10.22038/IJBMS.2018.30375.7323

Serum-based metabolic alterations in patients with papillary thyroid carcinoma unveiled by non-targeted 1H-NMR metabolomics approach.
Cited by: 11
Author(s): Reyhaneh Farrokhi Yekta, Mostafa Rezaei Tavirani, Afsaneh Arefi Oskouie, Mohammad Reza Mohajeri-Tehrani, Ahmad Reza Soroush, Alireza Akbarzadeh Baghban
Software Mentions: 2
Published: almost 6 years ago

10.1038/srep43326

Unravelling the metabolic impact of SBS-associated microbial dysbiosis: Insights from the piglet short bowel syndrome model
Cited by: 17
Author(s): Prue M. Pereira‐Fantini, Sean G. Byars, James Pitt, Susan Lapthorne, Fiona Fouhy, Paul D. Cotter, Julie E Bines
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-02708-x

Endometriosis foci differentiation by rapid lipid profiling using tissue spray ionization and high resolution mass spectrometry
Cited by: 24
Author(s): Vitaliy Chagovets, Wenwen Wang, Alexey Kononikhin, Natalia Starodubtseva, Anna V. Borisova, Dinara Salimova, Igor Popov, А. В. Козаченко, Konstantin Chingin, Huanwen Chen, Vladimir Frankevich, L.V. Adamyan, Г. Т. Сухих
Software Mentions: 2
Published: over 7 years ago

10.3390/diagnostics11020149

Novel Metabolic Signatures of Prostate Cancer Revealed by 1H-NMR Metabolomics of Urine
Cited by: 20
Author(s): Bo Yang, Chuan Zhang, Sheng Cheng, Gonghui Li, Jan Griebel, Jochen Neuhaus
Software Mentions: 2
Published: over 3 years ago

10.1128/mSystems.00312-18

Pseudomonas aeruginosa Alters Its Transcriptome Related to Carbon Metabolism and Virulence as a Possible Survival Strategy in Blood from Trauma Patients
Cited by: 10
Author(s): Moamen M. Elmassry, Nithya Mudaliar, Kameswara Rao Kottapalli, Sharmila Dissanaike, John Griswold, Michael J. San Francisco, Jane A. Colmer-Hamood, Abdul N. Hamood
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-017-07729-0

The chemical signatures underlying host plant discrimination by aphids
Cited by: 21
Author(s): David P. Hopkins, Duncan D. Cameron, Roger K. Butlin
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0192486

UPLC-QTOF-MS metabolomics analysis revealed the contributions of metabolites to the pathogenesis of Rhizoctonia solani strain AG-1-IA
Cited by: 11
Author(s): Wenjin Hu, Xinli Pan, Fengfeng Li, Wubei Dong
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2021.712614

Prebiotic Supplementation During Pregnancy Modifies the Gut Microbiota and Increases Metabolites in Amniotic Fluid, Driving a Tolerogenic Environment In Utero
Cited by: 16
Author(s): Carole Brosseau, Amandine Selle, Angéline Duval, Barbara Misme-Aucouturier, Mélanie Chesneau, Sophie Brouard, Claire Cherbuy, Véronique Cariou, Grégory Bouchaud, Kyle T Mincham, Deborah H. Strickland, S. Barbarot, Marie Bodinier
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0209913

Metabolic consequences of discretionary fortified beverage consumption containing excessive vitamin B levels in adolescents
Cited by: 6
Author(s): Shyamchand Mayengbam, Heidi Virtanen, Dustin S. Hittel, Charlene Elliott, Raylene A. Reimer, Hans J. Vogel, Jane Shearer
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/5243453

Integrated Metabolomic and Lipidomic Analysis Reveals the Neuroprotective Mechanisms of Bushen Tiansui Formula in an Aβ1-42-Induced Rat Model of Alzheimer’s Disease
Cited by: 19
Author(s): Min Yi, Chunhu Zhang, Zheyu Zhang, Pan Yi, Panpan Xu, Jianhua Huang, Weijun Peng
Software Mentions: 1
Published: about 4 years ago

10.3390/ani8100177

Apulo-Calabrese and Crossbreed Pigs Show Different Physiological Response and Meat Quality Traits after Short Distance Transport
Cited by: 5
Author(s): Gizella Aboagye, Stefania Dall’Olio, F. Tassone, Martina Zappaterra, Salvatore Carpino, Leonardo Nanni Costa
Software Mentions: 1
Published: almost 6 years ago

10.3390/biology10080807

Free Amino Acids Profile and Expression Analysis of Core Genes Involved in Branched-Chain Amino Acids Metabolism during Fruit Development of Longan (Dimocarpus longan Lour.) Cultivars with Different Aroma Types
Cited by: 6
Author(s): Wenshun Hu, Baiyu Wang, Muhammad Moaaz Ali, Xiuping Chen, Jisen Zhang, Shaoquan Zheng, Faxing Chen
Software Mentions: 1
Published: about 3 years ago

10.1155/2020/8645869

Evaluation of Gas Explosion Injury Based on Analysis of Rat Serum Profile by Ultra-Performance Liquid Chromatography/Mass Spectrometry-Based Metabonomics Techniques
Cited by: 7
Author(s): Xiushuai Dong, Weidong Wu, Sanqiao Yao, Jia Cao, Ling He, Houcheng Ren, Wenjie Ren
Software Mentions: 1
Published: about 4 years ago

10.1038/s41416-018-0363-8

Dynamic metrics-based biomarkers to predict responders to anti-PD-1 immunotherapy
Cited by: 15
Author(s): Can Liu, Hua He, Xiaobing Li, Maureen A. Su, Yanguang Cao
Software Mentions: 1
Published: over 5 years ago

10.3390/metabo11020121

NMR Metabolite Profiles in Male Meat-Eaters, Fish-Eaters, Vegetarians and Vegans, and Comparison with MS Metabolite Profiles
Cited by: 12
Author(s): Julie A. Schmidt, Georgina K. Fensom, Sabina Rinaldi, Augustin Scalbert, Marc J. Gunter, Michael V. Holmes, Timothy J. Key, Ruth C. Travis
Software Mentions: 1
Published: over 3 years ago

10.1186/s12934-017-0679-8

Inheritance of brewing-relevant phenotypes in constructed Saccharomyces cerevisiae × Saccharomyces eubayanus hybrids
Cited by: 50
Author(s): Kristoffer Krogerus, Tuulikki Seppänen‐Laakso, Sandra Castillo, Brian Gibson
Software Mentions: 1
Published: over 7 years ago

10.3390/molecules26102837

Development of a Wine Metabolomics Approach for the Authenticity Assessment of Selected Greek Red Wines
Cited by: 12
Author(s): Alexandros Tzachristas, Marilena E. Dasenaki, Reza Aalizadeh, Nikolaos S. Thomaidis, Charalampos Proestos
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0234989

N-glycomic profiling of colorectal cancer according to tumor stage and location
Cited by: 14
Author(s): Matilda Holm, Pirjo Nummela, Annamari Heiskanen, Tero Satomaa, Tuomas Kaprio, Harri Mustonen, Ari Ristimäki, Caj Haglund
Software Mentions: 1
Published: about 4 years ago

10.3390/diagnostics10121039

Differential Diagnosis of Preeclampsia Based on Urine Peptidome Features Revealed by High Resolution Mass Spectrometry
Cited by: 7
Author(s): Alexey Kononikhin, Natalia V. Zakharova, Viktoria A Sergeeva, Maria I. Indeykina, Natalia Starodubtseva, А. Е. Бугрова, Kamila T Muminova, Zulfiya S. Khodzhaeva, Igor Popov, Wenguang Shao, Patrik Pedrioli, Roman Shmakov, Vladimir Frankevich, Г. Т. Сухих, Evgeny N. Nikolaev
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2021.627129

Proteomic Responses to Alkali Stress in Oats and the Alleviatory Effects of Exogenous Spermine Application
Cited by: 6
Author(s): Jianhui Bai, Ke Jin, Wei Qin, Yuqing Wang, Qiang Yin
Software Mentions: 1
Published: over 3 years ago

10.3389/fvets.2021.702931

Variations in Microbial Diversity and Metabolite Profiles of Female Landrace Finishing Pigs With Distinct Feed Efficiency
Cited by: 2
Author(s): Zhixin Wang, Yingzhi He, Chuduan Wang, Ai Hong, Zhen Tan, Kai Xing
Software Mentions: 1
Published: about 3 years ago

10.1186/s40104-020-00543-1

Rumen microbiome structure and metabolites activity in dairy cows with clinical and subclinical mastitis
Cited by: 30
Author(s): Yue Wang, Xuemei Nan, Yiguang Zhao, Linshu Jiang, Mengling Wang, Hui Wang, Fan Zhang, Fuguang Xue, Dengke Hua, Jun Li, Junhu Yao, Benhai Xiong
Software Mentions: 1
Published: over 3 years ago

10.1038/srep29410

Rapid and label-free microfluidic neutrophil purification and phenotyping in diabetes mellitus
Cited by: 50
Author(s): Han Wei Hou, Chayakorn Petchakup, Hui Min Tay, Zhi Yang Tam, Rinkoo Dalan, Daniel Ek Kwang Chew, King Ho Holden Li, Bernhard O. Boehm
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-01735-y

Metabolite profiling in identifying metabolic biomarkers in older people with late-onset type 2 diabetes mellitus
Cited by: 35
Author(s): Zhi Yang Tam, Sean Pin Ng, Ling Tan, Chih-Hsien Lin, Dietrich Rothenbacher, Jochen Klenk, Bernhard O. Boehm
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-43374-5

Ultra-Clean Pure Shift 1H-NMR applied to metabolomics profiling
Cited by: 22
Author(s): Juan M. López, Rodrigo Cabrera, Helena Maruenda
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-44690-6

Multi-omics analysis of the development and fracture resistance for maize internode
Cited by: 8
Author(s): Xiaqing Wang, Ruyang Zhang, Zi Shi, Ying Zhang, Xuan Sun, Yulong Ji, Yanxin Zhao, Jidong Wang, Yunxia Zhang, Jinfeng Xing, Yuandong Wang, Ronghuan Wang, Wei Song, Jiuran Zhao
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-75317-w

Changes in physiological activities and root exudation profile of two grapevine rootstocks reveal common and specific strategies for Fe acquisition
Cited by: 13
Author(s): Laura Marastoni, Luigi Lucini, Begoña Miras-Moreno, Marco Trevisan, Davide Sega, Anita Zamboni, Zeno Varanini
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms19092748

TPS Genes Silencing Alters Constitutive Indirect and Direct Defense in Tomato
Cited by: 4
Author(s): Mariangela Coppola, Pasquale Cascone, Simone Bossi, Giuseppe Colla, Antonio P. Garonna, Massimo E. Maffei, Rosa Rao, Emilio Guerrieri
Software Mentions: 1
Published: about 6 years ago

Projects: bioconductor: ropls

Papers Mentioning ropls 81