Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSystems.00404-19

https://doi.org/10.1128/mSystems.00404-19

Effects of Antibiotic Pretreatment of an Ulcerative Colitis-Derived Fecal Microbial Community on the Integration of Therapeutic Bacteria <i>In Vitro</i>

Cited by: 13
Author(s): Kaitlyn Oliphant, Kyla Cochrane, Kathleen Schroeter, Michelle Daigneault, Sandi Yen, Elena F. Verdú, Emma Allen‐Vercoe
Published: almost 5 years ago

Software Mentions 11

bioconductor: ALDEx2
Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account
Papers that mentioned: 136
bioconductor: KEGGREST
Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)
Papers that mentioned: 75
bioconductor: ropls
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data
Papers that mentioned: 81
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: lme4
Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267
cran: lmerTest
Tests in Linear Mixed Effects Models
Papers that mentioned: 1,865
cran: lsmeans
Least-Squares Means
Papers that mentioned: 758
cran: MuMIn
Multi-Model Inference
Papers that mentioned: 1,276
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: rentrez
'Entrez' in R
Papers that mentioned: 36
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903