Ecosyste.ms: Papers

10.1155/2009/201325

Analysis of Array-CGH Data Using the R and Bioconductor Software Suite
Cited by: 8
Author(s): Winfried Hofmann, Anja Weigmann, Marcel Tauscher, Britta Skawran, Tim Focken, R Buurman, Luzie U. Wingen, Brigitte Schlegelberger, Doris Steinemann
Software Mentions: 11
Published: over 15 years ago

10.1155/2014/910390

<i>biomvRhsmm:</i>Genomic Segmentation with Hidden Semi-Markov Model
Cited by: 4
Author(s): Yang Du, Eduard Muráni, Siriluck Ponsuksili, Klaus Wimmers
Software Mentions: 10
Published: over 10 years ago

10.1186/s13058-018-1022-y

Clonal relatedness in tumour pairs of breast cancer patients
Cited by: 14
Author(s): Jana Biermann, Toshima Z. Parris, Szilárd Nemes, Anna Danielsson, Hanna Engqvist, Elisabeth Werner Rönnerman, Eva Forssell-Aronsson, Anikó Kovács, Per Karlsson, Khalil Helou
Software Mentions: 8
Published: almost 6 years ago

10.1371/journal.pone.0000737

ADaCGH: A Parallelized Web-Based Application and R Package for the Analysis of aCGH Data
Cited by: 26
Author(s): Ramón Díaz‐Uriarte, Oscar M. Rueda
Software Mentions: 8
Published: almost 17 years ago

10.1186/1471-2164-15-178

seqCNA: an R package for DNA copy number analysis in cancer using high-throughput sequencing
Cited by: 12
Author(s): David Mósen-Ansorena, Naiara Tellería, Silvia Veganzones, Virginia de la Orden, M.L. Maestro, Ana M. Aransay
Software Mentions: 7
Published: over 10 years ago

10.1155/2012/876976

A High-Throughput Computational Framework for Identifying Significant Copy Number Aberrations from Array Comparative Genomic Hybridisation Data
Cited by: 1
Author(s): Ian Roberts, Stephanie A. Carter, Cinzia G. Scarpini, Konstantina Karagavriilidou, Jenny Barna, M. Calleja, Nicholas Coleman
Software Mentions: 7
Published: almost 12 years ago

10.1186/s12918-015-0211-x

Integrating genetics and epigenetics in breast cancer: biological insights, experimental, computational methods and therapeutic potential
Cited by: 41
Author(s): Claudia Cava, Gloria Bertoli, Isabella Castiglioni
Software Mentions: 6
Published: almost 9 years ago

10.1128/mSphere.00167-17

Adaptive Mistranslation Accelerates the Evolution of Fluconazole Resistance and Induces Major Genomic and Gene Expression Alterations in Candida albicans
Cited by: 25
Author(s): Tobias Weil, Rodrigo Santamaría, Wanseon Lee, Johan Rung, Noemi Tocci, Darren Abbey, Ana R. Bezerra, Laura Carreto, Gabriela Moura, Mònica Bayés, Marta Gut, Attila Csikász‐Nagy, Duccio Cavalieri, Judith Berman, Manuel A. S. Santos
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0081458

Stability-Based Comparison of Class Discovery Methods for DNA Copy Number Profiles
Cited by: 1
Author(s): Isabel Martínez Brito, Philippe Hupé, Pierre Neuvial, Emmanuel Barillot
Software Mentions: 6
Published: over 10 years ago

10.1186/1471-2105-14-164

Learning smoothing models of copy number profiles using breakpoint annotations
Cited by: 44
Author(s): Toby Dylan Hocking, Gudrun Schleiermacher, Isabelle Janoueix‐Lerosey, Valentina Boeva, Julie Cappo, Olivier Delattre, Francis Bach, Jean-Philippe Vert
Software Mentions: 6
Published: about 11 years ago

10.1186/1471-2105-9-422

SIGMA2: A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes
Cited by: 32
Author(s): Raj Chari, Bradley P. Coe, Craig Wedseltoft, Marie Benetti, Ian M. Wilson, Emily A. Vucic, Calum MacAulay, Raymond T. Ng, Wan L. Lam
Software Mentions: 5
Published: almost 16 years ago

10.1371/journal.pone.0086272

Robust Regression Analysis of Copy Number Variation Data based on a Univariate Score
Cited by: 4
Author(s): Glen A. Satten, Andrew S. Allen, Morna Ikeda, Jennifer G. Mullé, Stephen T. Warren
Software Mentions: 5
Published: over 10 years ago

10.1186/1471-2105-8-145

A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array
Cited by: 24
Author(s): Tianwei Yu, Hui Ye, Wei Sun, Ker Chau Li, Zugen Chen, Sharoni Jacobs, Dione K. Bailey, David T. Wong, Xiaofeng Zhou
Software Mentions: 5
Published: about 17 years ago

10.3389/fgene.2014.00152

Bioinformatics for precision medicine in oncology: principles and application to the SHIVA clinical trial
Cited by: 73
Author(s): Nicolas Servant, Julien Roméjon, Pierre Gestraud, Philippe La Rosa, Georges Lucotte, Séverine Lair, Virginie Bernard, Bruno Zeitouni, Fanny Coffin, Gérôme Jules-Clément, Florent Yvon, Alban Lermine, Patrick Poullet, Stéphane Liva, Stuart Pook, Tatiana Popova, Camille Barette, François D. Prud’homme, Jean Gabriel Dick, Maud Kamal, Christophe Le Tourneau, Emmanuel Barillot, Philippe Hupé
Software Mentions: 5
Published: about 10 years ago

10.1371/journal.pone.0058294

Sequencing and Comparative Analysis of the Straw Mushroom (Volvariella volvacea) Genome
Cited by: 128
Author(s): Dapeng Bao, Ming Gong, Huajun Zheng, Mingjie Chen, Liang Zhang, Hong Wang, Jianping Jiang, Lin Wu, Yaping Zhu, Gang Zhu, Yan Zhou, Chuanhua Li, Shengyue Wang, Yan Zhao, Guoping Zhao, Qian Tan
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pgen.1000832

U87MG Decoded: The Genomic Sequence of a Cytogenetically Aberrant Human Cancer Cell Line
Cited by: 238
Author(s): Michael J. Clark, Nils Homer, Brian D. O’Connor, Zugen Chen, Ascia Eskin, Hane Lee, Barry Merriman, Stanley F. Nelson
Software Mentions: 4
Published: over 14 years ago

10.1186/1471-2105-10-10

Bayesian DNA copy number analysis
Cited by: 34
Author(s): Paola Mv Rancoita, Marcus Hutter, Francesco Bertoni, Ivo Kwee
Software Mentions: 4
Published: over 15 years ago

10.1371/journal.pone.0012548

The Proneural Molecular Signature Is Enriched in Oligodendrogliomas and Predicts Improved Survival among Diffuse Gliomas
Cited by: 130
Author(s): Lee Cooper, David Gutman, Qi Long, Brent A. Johnson, Sharath R. Cholleti, Tahsin Kurç, Joel Saltz, Daniel J. Brat, Carlos S. Moreno
Software Mentions: 4
Published: almost 14 years ago

10.1186/1471-2407-10-78

Selective regain of egfr gene copies in CD44+/CD24-/lowbreast cancer cellular model MDA-MB-468
Cited by: 20
Author(s): Konstantin Agelopoulos, Burkhard Greve, Hartmut Schmidt, Heike Pospisil, Stefan Kurtz, Kai Bartkowiak, Antje Andreas, Marek Wieczorek, Eberhard Korsching, Horst Buerger, Burkhard Brandt
Software Mentions: 4
Published: over 14 years ago

10.1371/journal.pone.0180647

Assessment of circulating copy number variant detection for cancer screening
Cited by: 30
Author(s): Bhuvan Molparia, Eshaan Nichani, Ali Torkamani
Software Mentions: 4
Published: about 7 years ago

10.1186/1471-2164-9-S2-S17

Array CGH data modeling and smoothing in Stationary Wavelet Packet Transform domain
Cited by: 15
Author(s): Heng Huang, Nha Nguyen, S. Oraintara, An Vo
Software Mentions: 4
Published: over 16 years ago

10.1371/journal.pone.0003916

A Snapshot of CNVs in the Pig Genome
Cited by: 110
Author(s): João Fadista, Marianne Nygaard, Lars‐Erik Holm, Bo Thomsen, Christian Berthou
Software Mentions: 4
Published: over 15 years ago

10.2174/138920209787581244

Using Free and Open-Source Bioconductor Packages to Analyze Array Comparative Genomics Hybridization (aCGH) Data
Cited by: 2
Author(s): Simon Lin, Pan Du, Nadereh Jafari, Toru Ouchi
Software Mentions: 4
Published: over 15 years ago

10.1186/bcr3150

Relevance of PTEN loss in brain metastasis formation in breast cancer patients
Cited by: 87
Author(s): Harriet Wikman, Katrin Lamszus, Niclas Detels, Liubov Uslar, Michaela Wrage, Christian Benner, Ina Hohensee, Bauke Ylstra, Kathrin Eylmann, Marc Zapatka, Guido Sauter, Dirk Kemming, Markus Glatzel, Volkmar Müller, Manfred Westphal, Klaus Pantel
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0133465

Family-Based Benchmarking of Copy Number Variation Detection Software
Cited by: 9
Author(s): Marcel Nutsua, Annegret Fischer, Almut Nebel, Sylvia Hofmann, Stefan Schreiber, Michael Krawczak, Michael Nothnagel
Software Mentions: 3
Published: about 9 years ago

10.1534/g3.120.401775

BioLitMine: Advanced Mining of Biomedical and Biological Literature About Human Genes and Genes from Major Model Organisms
Cited by: 7
Author(s): Yanhui Hu, Verena Chung, Aram Comjean, Jonathan Rodiger, Fnu Nipun, Norbert Perrimon, Stephanie E. Mohr
Software Mentions: 3
Published: over 3 years ago

10.1186/1471-2105-11-200

Conditional random pattern model for copy number aberration detection
Cited by: 2
Author(s): Fuhai Li, Xiaobo Zhou, Wan‐Ting Huang, Chung Che Chang, Stephen T.C. Wong
Software Mentions: 3
Published: over 14 years ago

10.1186/1471-2105-11-297

A classification model for distinguishing copy number variants from cancer-related alterations
Cited by: 12
Author(s): Irina Ostrovnaya, Gouri J. Nanjangud, Adam B. Olshen
Software Mentions: 3
Published: about 14 years ago

10.1371/journal.pcbi.0030122

Flexible and Accurate Detection of Genomic Copy-Number Changes from aCGH
Cited by: 52
Author(s): Oscar M. Rueda, Ramón Dı́az-Uriarte
Software Mentions: 3
Published: about 17 years ago

10.1371/journal.pone.0144528

Mutation Screening of 1,237 Cancer Genes across Six Model Cell Lines of Basal-Like Breast Cancer
Cited by: 4
Author(s): Elin Olsson, Christof Winter, Anthony George, Yilun Chen, Therese Törngren, Pär‐Ola Bendahl, Åke Borg, Sofia K. Gruvberger-Saal, Lao H. Saal
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2105-8-394

A response to Yu et al. "A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array", BMC Bioinformatics 2007, 8: 145
Cited by: 4
Author(s): Oscar M. Rueda, Ramón Díaz‐Uriarte
Software Mentions: 2
Published: almost 17 years ago

10.1186/1471-2105-12-S5-S4

SNP and gene networks construction and analysis from classification of copy number variations data
Cited by: 11
Author(s): Yang Liu, Yiu Fai Lee, Michael K. Ng
Software Mentions: 2
Published: about 13 years ago

10.1186/s12859-017-1509-z

The Drosophila Gene Expression Tool (DGET) for expression analyses
Cited by: 43
Author(s): Yanhui Hu, Aram Comjean, Norbert Perrimon, Stephanie E. Mohr
Software Mentions: 2
Published: over 7 years ago

10.1186/1755-8794-2-21

High-resolution analysis of copy number alterations and associated expression changes in ovarian tumors
Cited by: 79
Author(s): Peter M. Haverty, Lawrence S. Hon, Joshua S. Kaminker, John Chant, Zemin Zhang
Software Mentions: 2
Published: about 15 years ago

10.1186/1755-8794-5-54

An array CGH based genomic instability index (G2I) is predictive of clinical outcome in breast cancer and reveals a subset of tumors without lymph node involvement but with poor prognosis
Cited by: 15
Author(s): Françoise Bonnet, Mickaël Guedj, Natalie Jones, Sana Sfar, Véronique Brouste, Nabila Elarouci, Guillaume Banneau, Béatrice Orsetti, Charlotte Primois, C. Tunon de Lara, Marc Debled, Isabelle de Mascarel, Charles Theillet, Nicolas Sévenet, Aurélien de Reyniès, Gaëtan MacGrogan, Michel Longy
Software Mentions: 2
Published: over 11 years ago

10.1186/1756-0500-3-350

Bayesian estimation of genomic copy number with single nucleotide polymorphism genotyping arrays
Cited by: 0
Author(s): Beibei Guo, Alejandro Villagran, Marina Vannucci, Jian Wang, Caleb Davis, Tsz-Kwong Man, Ching C. Lau, Rudy Guerra
Software Mentions: 2
Published: over 13 years ago

10.3762/bjnano.8.200

Advances and challenges in the field of plasma polymer nanoparticles
Cited by: 32
Author(s): Andrei Choukourov, Pavel Pleskunov, Daniil Nikitin, В. А. Титов, Artem Shelemin, Mykhailo Vaidulych, Anna Kuzminova, Pavel Solař, Jan Hanuš, Jaroslav Kousal, Ondřej Kylián, D. Slavı́nská, Hynek Biederman
Software Mentions: 2
Published: almost 7 years ago

10.1186/bcr2626

Molecular apocrine differentiation is a common feature of breast cancer in patients with germline PTEN mutations
Cited by: 57
Author(s): Guillaume Banneau, Mickaël Guedj, Gaëtan MacGrogan, Isabelle de Mascarel, Valérie Velasco, Renaud Schiappa, Valérie Bonadona, Albert David, Catherine Dugast, Brigitte Gilbert‐Dussardier, Olivier Ingster, P. Vabres, F. Caux, Aurélien de Reyniès, Richard Iggo, Nicolas Sévenet, Françoise Bonnet, Michel Longy
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pcbi.1002286

Parsimonious Higher-Order Hidden Markov Models for Improved Array-CGH Analysis with Applications to Arabidopsis thaliana
Cited by: 22
Author(s): Michael Seifert, André Gohr, Marc Strickert, Ivo Große
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pgen.1003553

NSAIDs Modulate Clonal Evolution in Barrett's Esophagus
Cited by: 60
Author(s): Rumen Kostadinov, Mary K. Kuhner, Xiaohong Li, Carissa A. Sanchez, Patricia C. Galipeau, Thomas G. Paulson, Cassandra L. Sather, Amitabh Srivastava, Robert D. Odze, Patricia L. Blount, Thomas L. Vaughan, Brian J. Reid, Carlo C. Maley
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0061556

Better Prognosis of Patients with Glioma Expressing FGF2-Dependent PDGFRA Irrespective of Morphological Diagnosis
Cited by: 11
Author(s): Dongfeng Chen, Annette Persson, Yingyu Sun, Leif G. Salford, David Gisselsson Nord, Elisabet Englund, Tao Jiang, Xiaolong Fan
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0052516

Comparative Analysis of Methods for Identifying Recurrent Copy Number Alterations in Cancer
Cited by: 11
Author(s): Xiguo Yuan, Junying Zhang, Shengli Zhang, Guoqiang Yu, Yue Wang
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0026975

A Multi-Sample Based Method for Identifying Common CNVs in Normal Human Genomic Structure Using High-Resolution aCGH Data
Cited by: 5
Author(s): Chihyun Park, Jaegyoon Ahn, Yoon Yong-Jin, Sang‐Hyun Park
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0100295

Autoregressive Higher-Order Hidden Markov Models: Exploiting Local Chromosomal Dependencies in the Analysis of Tumor Expression Profiles
Cited by: 22
Author(s): Michael Seifert, Khalil Abou-El-Ardat, Betty Friedrich, Barbara Klink, Andreas Deutsch
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0048941

Piecewise Polynomial Representations of Genomic Tracks
Cited by: 2
Author(s): Maxime Tarabichi, Vincent Detours, Tomasz Konopka
Software Mentions: 2
Published: over 11 years ago

10.3389/fpls.2018.00366

Genomic Selection Outperforms Marker Assisted Selection for Grain Yield and Physiological Traits in a Maize Doubled Haploid Population Across Water Treatments
Cited by: 61
Author(s): Diego Cerrudo, Sen Cao, Yibing Yuan, Carlos Alberto Martínez, Edgar Antonio Suarez, Raman Babu, Xuecai Zhang, Samuel Trachsel
Software Mentions: 2
Published: over 6 years ago

10.1186/gm434

Tumor-associated copy number changes in the circulation of patients with prostate cancer identified through whole-genome sequencing
Cited by: 297
Author(s): Ellen Heitzer, Peter Ulz, Jelena Belic, S. Gutschi, Franz Quehenberger, Katja Fischereder, Theresa Benezeder, Martina Auer, Carina Pischler, Sebastian Mannweiler, Martin Pichler, Florian Eisner, Martin Haeusler, Sabine Riethdorf, Klaus Pantel, Hellmut Samonigg, Gerald Höefler, Herbert Augustin, Jochen B. Geigl, Michael R. Speicher
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-019-50891-w

Distinctive mutational spectrum and karyotype disruption in long-term cisplatin-treated urothelial carcinoma cell lines
Cited by: 8
Author(s): Margaretha A. Skowron, Patrick Petzsch, Karin Hardt, Nicholas Wagner, Manfred Beier, Stefanie Stepanow, Matthias Drechsler, Harald Rieder, Karl Köhrer, Günter Niegisch, Michéle J. Hoffmann, Wolfgang A. Schulz
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms21186727

Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics
Cited by: 15
Author(s): Xing Li, Zhijue Xu, Xiangfei Hong, Yan Zhang, Xia Zou
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0030907

Identification of Novel Candidate Oncogenes in Chromosome Region 17p11.2-p12 in Human Osteosarcoma
Cited by: 35
Author(s): Joeri Both, Thijs Wu, Johannes Bras, Gerard R. Schaap, Frank Baas, Theo J.M. Hulsebos
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0009921

Empirical Evaluation of Oligonucleotide Probe Selection for DNA Microarrays
Cited by: 16
Author(s): Jennifer G. Mullé, Viren Patel, Stephen T. Warren, Madhuri Hegde, David J. Cutler, Michael E. Zwick
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-7-91

CGHScan: finding variable regions using high-density microarray comparative genomic hybridization data
Cited by: 4
Author(s): Bradley D. Anderson, Michael C. Gilson, Abigail A Scott, Bryan S. Biehl, Jeremy D. Glasner, Gireesh Rajashekara, Gary A. Splitter, Nicole T. Perna
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2164-11-639

An initial comparative map of copy number variations in the goat (Capra hircus) genome
Cited by: 117
Author(s): Luca Fontanesi, Pier Luigi Martelli, Francesca Beretti, Valentina Riggio, Stefania Dall’Olio, Michela Colombo, Rita Casadio, Vincenzo Russo, Baldassare Portolano
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-9-S2-S7

Biomarker discovery across annotated and unannotated microarray datasets using semi-supervised learning
Cited by: 12
Author(s): Cole Harris, Noushin Ghaffari
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2407-9-237

Identification of novel candidate target genes, including EPHB3, MASP1 and SSTat 3q26.2–q29 in squamous cell carcinoma of the lung
Cited by: 64
Author(s): Ji Un Kang, Sun Hoe Koo, Gye Cheol Kwon, Jong Woo Park, Jin Man Kim
Software Mentions: 1
Published: about 15 years ago

10.1186/gb-2008-9-5-r86

GeneCount: genome-wide calculation of absolute tumor DNA copy numbers from array comparative genomic hybridization data
Cited by: 15
Author(s): Heidi Lyng, Malin Lando, Runar S Brøvig, Debbie Hege Svendsrud, Morten Johansen, Eivind Galteland, Odd Terje Brustugun, Leonardo A. Meza‐Zepeda, Ola Myklebost, Gunnar B. Kristensen, Eivind Hovig, Trond Stokke
Software Mentions: 1
Published: over 16 years ago

10.1186/s12859-018-2256-5

Effective normalization for copy number variation in Hi-C data
Cited by: 26
Author(s): Nicolas Servant, Nelle Varoquaux, Edith Heard, Emmanuel Barillot, Jean-Philippe Vert
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2105-13-277

Simple binary segmentation frameworks for identifying variation in DNA copy number
Cited by: 2
Author(s): Tae Young Yang
Software Mentions: 1
Published: over 11 years ago

10.1186/gb-2009-10-10-r119

An optimization framework for unsupervised identification of rare copy number variation from SNP array data
Cited by: 22
Author(s): Gökhan Yavaş, Mehmet Koyutürk, Meral Özsoyoğlu, Meetha P. Gould, Thomas LaFramboise
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2105-11-74

CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics
Cited by: 48
Author(s): Xiaowu Gai, Juan C. Perín, Kevin Murphy, Ryan O'Hara, Monica D’Arcy, Adam S Wenocur, Hongbo Xie, Eric Rappaport, Tamim H. Shaikh, Peter S. White
Software Mentions: 1
Published: over 14 years ago

10.1038/s41388-018-0444-4

Cross-species genomics identifies DLG2 as a tumor suppressor in osteosarcoma
Cited by: 59
Author(s): Yang Shao, Geoffrey A. Wood, Jinchang Lu, Qinglian Tang, Jonathan Liu, Sam D. Molyneux, Yan Chen, Hui Fang, Hibret A. Adissu, Trevor D. McKee, Paul Waterhouse, Rama Khokha
Software Mentions: 1
Published: almost 6 years ago

10.1128/JVI.01178-19

Antigenic Pressure on H3N2 Influenza Virus Drift Strains Imposes Constraints on Binding to Sialylated Receptors but Not Phosphorylated Glycans
Cited by: 28
Author(s): Lauren Byrd-Leotis, Chao Gao, Nan Jia, Akul Y. Mehta, Jessica F. Trost, Sandra F. Cummings, Jamie Heimburg-Molinaro, Richard D. Cummings, David A. Steinhauer
Software Mentions: 1
Published: over 4 years ago

10.1186/s13063-020-04952-5

Exercise therapy and patient education versus intra-articular saline injections in the treatment of knee osteoarthritis: an evidence-based protocol for an open-label randomised controlled trial (the DISCO trial)
Cited by: 6
Author(s): Elisabeth Bandak, Anders Overgaard, Lars Erik Kristensen, Karen Ellegaard, Jørgen Guldberg-Møller, Cecilie Bartholdy, David J. Hunter, Roy D. Altman, Robin Christensen, Henning Bliddal, Marius Henriksen
Software Mentions: 1
Published: over 3 years ago

10.1186/1868-7083-5-16

Methylation profiling and evaluation of demethylating therapy in renal cell carcinoma
Cited by: 34
Author(s): Christopher J. Ricketts, Mark R. Morris, Dean Gentle, Salwati Shuib, Michael D. Brown, Noel W. Clarke, Wenbin Wei, Paul Nathan, Farida Latif, Eamonn R. Maher
Software Mentions: 1
Published: almost 11 years ago

10.1038/s42003-020-0819-2

Development of smart anti-glycan reagents using immunized lampreys
Cited by: 24
Author(s): Tanya R. McKitrick, Christoffer K. Goth, Charles S. Rosenberg, Hirotomo Nakahara, Jamie Heimburg-Molinaro, Alyssa M McQuillan, Rosalia Falco, Nicholas J. Rivers, Brantley R. Herrin, Max D. Cooper, Richard D. Cummings
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2105-12-146

Wavelet-based identification of DNA focal genomic aberrations from single nucleotide polymorphism arrays
Cited by: 10
Author(s): Youngmi Hur, Hyunju Lee
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2105-8-368

Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data
Cited by: 52
Author(s): Ágnes Baross, Allen Delaney, H. Irene Li, Tarun Nayar, Stéphane Flibotte, Hong Qian, Susanna Chan, Jennifer Asano, Adrian Ally, Manqiu Cao, Patricia Birch, Mabel Brown-John, Nicole Fernandes, Anne Go, Giulia C. Kennedy, Sylvie Langlois, Patrice Eydoux, Jan M. Friedman, Marco A. Marra
Software Mentions: 1
Published: almost 17 years ago

10.3389/fchem.2019.00833

Glycan Microarrays as Chemical Tools for Identifying Glycan Recognition by Immune Proteins
Cited by: 56
Author(s): Chao Gao, Mohui Wei, Tanya R. McKitrick, Alyssa M McQuillan, Jamie Heimburg-Molinaro, Richard D. Cummings
Software Mentions: 1
Published: over 4 years ago

10.1042/BSR20202338

An interactive network of alternative splicing events with prognostic value in geriatric lung adenocarcinoma via the regulation of splicing factors
Cited by: 2
Author(s): Yidi Wang, Yaxuan Wang, Kenan Li, Yabing Du, Kang Cui, Yu Pan, Tengfei Zhang, Hong Liu, Wei Ma
Software Mentions: 1
Published: almost 4 years ago

10.1111/brv.12488

Trait‐based ecology of terrestrial arthropods
Cited by: 140
Author(s): Mark K. L. Wong, Benoit Guénard, Owen T. Lewis
Software Mentions: 1
Published: over 5 years ago

10.1002/advs.201700234

Corrosion-Protected Hybrid Nanoparticles
Cited by: 16
Author(s): Hyeon‐Ho Jeong, Mariana Alarcón‐Correa, Andrew Mark, Kwanghyo Son, Tung‐Chun Lee, Peer Fischer
Software Mentions: 1
Published: almost 7 years ago

10.3390/ma13092135

Dry Electrodes for Surface Electromyography Based on Architectured Titanium Thin Films
Cited by: 23
Author(s): Marco S. Rodrigues, Patrique Fiedler, Nora Küchler, R. P. Domingues, C. Lopes, Joel Nuno Pinto Borges, Jens Haueisen, F. Vaz
Software Mentions: 1
Published: about 4 years ago

10.7717/peerj-cs.170

Machine learning with remote sensing data to locate uncontacted indigenous villages in Amazonia
Cited by: 4
Author(s): Robert Walker, Marcus J. Hamilton
Software Mentions: 1
Published: over 5 years ago

10.3762/bjoc.16.187

Tools for generating and analyzing glycan microarray data
Cited by: 8
Author(s): Akul Y. Mehta, Jamie Heimburg-Molinaro, Richard D. Cummings
Software Mentions: 1
Published: almost 4 years ago

10.1002/advs.201901822

Extracellular Nanomatrix‐Induced Self‐Organization of Neural Stem Cells into Miniature Substantia Nigra‐Like Structures with Therapeutic Effects on Parkinsonian Rats
Cited by: 9
Author(s): Shiqing Zhang, Peng Sun, Kaili Lin, Florence Hiu Ling Chan, Qi Gao, Wai Fung Lau, Vellaisamy A. L. Roy, Hongqi Zhang, King Wai Chiu Lai, Zhifeng Huang, Kin Lam Yung
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.brat.2019.103503

The Genetic Links to Anxiety and Depression (GLAD) Study: Online recruitment into the largest recontactable study of depression and anxiety
Cited by: 39
Author(s): Molly R. Davies, Gursharan Kalsi, Chérie Armour, Ian Jones, Andrew M. McIntosh, Daniel J. Smith, James Walters, John R. Bradley, Nathalie Kingston, Sofie Ashford, Ioana Beange, Anamaria Brăilean, Anthony J. Cleare, Jonathan R. I. Coleman, Charles Curtis, Susannah C.B. Curzons, Katrina Davis, Le Roy C. Dowey, Victor Gault, Kimberley Goldsmith, Megan Hammond Bennett, Yoriko Hirose, Matthew Hotopf, Christopher Hübel, Carola Kanz, Jennifer Leng, Donald M. Lyall, Bethany D. Mason, Monika McAtarsney-Kovacs, Dina Monssen, Alexei Moulton, Nigel Ovington, Elisavet Palaiologou, Carmine Pariante, Shivani Parikh, Alicia J. Peel, Ruth K. Price, Katharine A. Rimes, H. J. Rogers, Jennifer Sambrook, Megan Skelton, Anna Spaul, Eddy L.A. Suarez, Bronte L. Sykes, Keith Thomas, Allan H. Young, Evangelos Vassos, David Veale, Katie M White, Janet Wingrove, Thalia C. Eley, Gerome Breen
Software Mentions: 1
Published: over 4 years ago

10.1002/advs.201500016

Selectable Nanopattern Arrays for Nanolithographic Imprint and Etch-Mask Applications
Cited by: 13
Author(s): Hyeon‐Ho Jeong, Andrew Mark, Tung‐Chun Lee, Kwanghyo Son, Wenwen Chen, Mariana Alarcón‐Correa, Insook Kim, Gisela Schütz, Peer Fischer
Software Mentions: 1
Published: about 9 years ago

10.1186/s12891-018-2334-x

GLA:D® Back group-based patient education integrated with exercises to support self-management of back pain - development, theories and scientific evidence -
Cited by: 35
Author(s): Per Kjær, Alice Kongsted, Inge Ris Hansen, Allan Abbott, Charlotte Diana Nørregaard Rasmussen, Ewa M. Roos, Søren Thorgaard Skou, Tonny Elmose Andersen, Jan Hartvigsen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0000769

Detection of Novel Amplicons in Prostate Cancer by Comprehensive Genomic Profiling of Prostate Cancer Cell Lines Using Oligonucleotide-Based ArrayCGH
Cited by: 15
Author(s): J. Kamradt, Volker Jung, Kerstin Wahrheit, Laura Toloşi, Joerg Rahnenfuehrer, Martin K. Schilling, Robert L. Walker, Sean Davis, Michael Stöeckle, Paul S. Meltzer, Bernd Wullich
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2288-7-28

Developing search strategies for clinical practice guidelines in SUMSearch and Google Scholar and assessing their retrieval performance
Cited by: 26
Author(s): Andrea Haase, Markus Follmann, Guido Skipka, H. Kirchner
Software Mentions: 1
Published: about 17 years ago