Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: co
https://packages.ecosyste.ms/registries/pypi.org/packages/co
Python library for making and tracking mutated copies of DNA components
4 versions
Latest release: over 9 years ago
89 downloads last month
Papers Mentioning co 78
10.1371/journal.pone.0189789
An integrative framework to reevaluate the Neotropical catfish genus Guyanancistrus (Siluriformes: Loricariidae) with particular emphasis on the Guyanancistrus brevispinis complexCited by: 11
Author(s): Sonia Fisch-Muller, Jan H. Mol, Raphaël Covain
Software Mentions: 16
Published: over 6 years ago
10.3389/fcell.2021.621618
Functional Assessment of Four Novel Immune-Related Biomarkers in the Pathogenesis of Clear Cell Renal Cell CarcinomaCited by: 7
Author(s): Daojun Lv, Xiangkun Wu, Ming Wang, Wenzhe Chen, Shuxin Yang, Yongda Liu, Guohua Zeng, Danan Gu
Software Mentions: 11
Published: about 3 years ago
10.1038/tp.2016.119
Transcriptomic signatures of neuronal differentiation and their association with risk genes for autism spectrum and related neuropsychiatric disordersCited by: 23
Author(s): Andreas G. Chiocchetti, Denise Haslinger, Jason L. Stein, Luis de la Torre-Ubieta, Enrico Cocchi, Thomas Rothämel, Silvia Lindlar, Regina Waltes, Simone Fulda, Daniel H. Geschwind, Christine M. Freitag
Software Mentions: 10
Published: almost 8 years ago
10.1038/s41598-020-72569-4
Abiotic and past climatic conditions drive protein abundance variation among natural populations of the caddisfly Crunoecia irrorataCited by: 2
Author(s): Joshua Niklas Ebner, Danilo Ritz, Stefanie von Fumetti
Software Mentions: 9
Published: over 3 years ago
10.3389/fgene.2019.01143
Identification of a Tumor Microenvironment-Related Eight-Gene Signature for Predicting Prognosis in Lower-Grade GliomasCited by: 24
Author(s): Jun Su, Wenyong Long, Qianquan Ma, Kai Xiao, Li Yang, Qian Xiao, Gang Peng, Jian Yuan, Qing Liu
Software Mentions: 8
Published: over 4 years ago
10.1186/s12967-020-02387-9
A prognostic nomogram integrating novel biomarkers identified by machine learning for cervical squamous cell carcinomaCited by: 7
Author(s): Yimin Li, Shun Lü, Mei Lan, Xinhao Peng, Zijian Zhang, Jinyi Lang
Software Mentions: 8
Published: almost 4 years ago
10.1038/s41419-021-03552-8
Transcriptional profiling reveals the transcription factor networks regulating the survival of striatal neuronsCited by: 12
Author(s): Lin Yang, 智慧 蘇, Zi-Wu Wang, Zhenmeiyu Li, Zicong Shang, Heng Du, Shuai Liu, Dashi Qi, Zhengang Yang, Zhejun Xu, Zhuangzhi Zhang
Software Mentions: 8
Published: about 3 years ago
10.18632/aging.102844
Development of a four-gene prognostic model for pancreatic cancer based on transcriptome dysregulationCited by: 19
Author(s): Jie Yan, Liangcai Wu, Congwei Jia, Shuangni Yu, Zhaohui Lü, Yueping Sun, Jie Chen
Software Mentions: 7
Published: over 4 years ago
10.3390/genes10020087
Machine Learning and Integrative Analysis of Biomedical Big DataCited by: 185
Author(s): Bilal Mirza, Wei Wang, Jie Wang, Howard Choi, Neo Christopher Chung, Peipei Ping
Software Mentions: 7
Published: over 5 years ago
10.1186/s13000-021-01118-y
Identification of immune-infiltrating cell-related biomarkers in hepatocellular carcinoma based on gene co-expression network analysisCited by: 6
Author(s): Yinghui Hou, Guizhi Zhang
Software Mentions: 7
Published: almost 3 years ago
10.1242/dev.199561
Global proteomic analyses of human cytotrophoblast differentiation/invasionCited by: 4
Author(s): Hao Chen, Katherine E. Williams, Elaine Kwan, Mirhan Kapidzic, Kenisha A. Puckett, Rayyan Aburajab, Joshua F. Robinson, Susan J. Fisher
Software Mentions: 7
Published: almost 3 years ago
10.1371/journal.pone.0079729
DCGL v2.0: An R Package for Unveiling Differential Regulation from Differential Co-expressionCited by: 76
Author(s): Jing Yang, Hui Yu, Baohong Liu, Zhongming Zhao, Lei Liu, Liangxiao Ma, Yixue Li, Yuanyuan Li
Software Mentions: 7
Published: over 10 years ago
10.3389/fimmu.2019.00243
Diet in the Driving Seat: Natural Diet-Immunity-Microbiome Interactions in Wild FishCited by: 16
Author(s): Ida M. Friberg, John D. Taylor, Joe Jackson
Software Mentions: 7
Published: over 5 years ago
10.3389/fgene.2019.00209
Identifying Hub Genes for Heat Tolerance in Water Buffalo (Bubalus bubalis) Using Transcriptome DataCited by: 23
Author(s): Shenhe Liu, Tingzhu Ye, Zipeng Li, Jun Li, Muhammad Jamil Ahmad, Yang Zhou, Guohua Hua, Aixin Liang, Tingxian Deng, Liguo Yang
Software Mentions: 6
Published: about 5 years ago
10.1038/s41380-020-0669-9
Transcriptome of iPSC-derived neuronal cells reveals a module of co-expressed genes consistently associated with autism spectrum disorderCited by: 37
Author(s): Karina Griesi-Oliveira, Mariana Soares Fogo, Bruna G G Pinto, Aline Yasuda Alves, Adriano K. Suzuki, Andressa Gois Morales, Suzana Ezquina, Omar Sosa, Gavin J. Sutton, Daniele Yumi Sunaga-Franze, Ana Paula Silva Bueno, Gabriela Seabra, Luis Roberto Sardinha, Silvia Souza da Costa, Carla Rosenberg, Elaine Cristina Zachi, Andréa L. Sertié, Daniel Martins‐de‐Souza, Eduardo M. Reis, Irina Voineagu, Maria Rita Passos‐Bueno
Software Mentions: 6
Published: over 4 years ago
10.15252/msb.20209684
Genetic regulation of liver lipids in a mouse model of insulin resistance and hepatic steatosisCited by: 14
Author(s): Frode Norheim, Karthickeyan Chella Krishnan, Thomas Bjellaas, Laurent Vergnes, Calvin Pan, Brian W. Parks, Yan Meng, Jennifer M. Lang, James A. Ward, Karen Reue, Margarete Mehrabian, Thomas E. Gundersen, Miklós Péterfy, Knut Tomas Dalen, Christian A. Drevon, Simon T. Hui, Aldons J. Lusis, Marcus M. Seldin
Software Mentions: 6
Published: over 3 years ago
10.1007/s00018-020-03485-z
Anti-adipogenic signals at the onset of obesity-related inflammation in white adipose tissueCited by: 17
Author(s): Tiziana Caputo, Van Du T. Tran, Nasim Bararpour, Carine Winkler, Gabriela Aguileta, Bao Khanh Trang, Greta Maria Paola Giordano Attianese, Anne Wilson, Aurélien Thomas, Marco Pagni, Nicolas Guex, Béatrice Desvergne, Federica Gilardi
Software Mentions: 6
Published: about 4 years ago
10.3389/fcell.2021.690167
Sex-Specific Development in Haplodiploid Honeybee Is Controlled by the Female-Embryo-Specific Activation of Thousands of Intronic LncRNAsCited by: 0
Author(s): Miao Wang, Dong Chen, Huoqing Zheng, Luping Zhao, Xiao‐Feng Xue, Fengyun Yu, Yu Zhang, Chao Cheng, Qingsheng Niu, Shuai Wang, Yi Zhang, Liming Wu
Software Mentions: 6
Published: almost 3 years ago
10.3390/ijms21041512
Dynamics of the Transcriptome Response to Heat in the Moss, Physcomitrella patensCited by: 11
Author(s): Osama Elzanati, Saïd Mouzeyar, Jane Roche
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0204153
Overexpression of the Sorghum bicolor SbCCoAOMT alters cell wall associated hydroxycinnamoyl groupsCited by: 18
Author(s): Hannah M. Tetreault, Erin D. Scully, Tammy Gries, Nathan A. Palmer, Deanna L. Funnell‐Harris, Lisa Baird, Javier Seravalli, Bruce S. Dien, Gautam Sarath, Thomas E. Clemente, Scott E. Sattler
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-017-07238-0
T2DiACoD: A Gene Atlas of Type 2 Diabetes Mellitus Associated Complex DisordersCited by: 32
Author(s): Jyoti Rani, Inna Mittal, Atreyi Pramanik, Namita Singh, Namita Dube, Smriti Sharma, Bhanwar Lal Puniya, Muthukurussi Varieth Raghunandanan, Ahmed Mobeen, Srinivasan Ramachandran
Software Mentions: 5
Published: almost 7 years ago
10.1186/s13073-021-00924-9
The host transcriptional response to Candidemia is dominated by neutrophil activation and heme biosynthesis and supports novel diagnostic approachesCited by: 8
Author(s): Julie M. Steinbrink, Rachel A. Myers, Kaiyuan Hua, Melissa D. Johnson, Jessica Seidelman, Ephraim L. Tsalik, Ricardo Henao, Geoffrey S. Ginsburg, Christopher W. Woods, Barbara D. Alexander, Micah T. McClain
Software Mentions: 5
Published: almost 3 years ago
10.1002/pld3.220
Identification of nodulation‐related genes in <i>Medicago truncatula</i> using genome‐wide association studies and co‐expression networksCited by: 4
Author(s): Jean Michel Michno, Junqi Liu, Joseph Jeffers, Robert M. Stupar, Chad L. Myers
Software Mentions: 5
Published: about 4 years ago
10.1186/s12885-021-07928-z
Integrated bioinformatic analysis identifies UBE2Q1 as a potential prognostic marker for high grade serous ovarian cancerCited by: 8
Author(s): Rachel Topno, I.K. Singh, Manoj Kumar, Pallavi Agarwal
Software Mentions: 5
Published: about 3 years ago
10.3389/fonc.2019.01147
Clinical and Expression Significance of AKT1 by Co-expression Network Analysis in Endometrial CancerCited by: 19
Author(s): Xiao Huo, Hengzi Sun, Qian Liu, Xiangwen Ma, Peng Peng, Mei Yu, Ying Zhang, Dongyan Cao, Keng Shen
Software Mentions: 5
Published: over 4 years ago
10.1038/s42003-021-01859-y
A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnologyCited by: 16
Author(s): Sara Calhoun, Tisza Ann Szeremy Bell, Lukas R. Dahlin, Yuliya A. Kunde, Kurt LaButti, Katherine Louie, Andrea Kuftin, Daniel Treen, David Dilworth, Sirma Mihaltcheva, Christopher Daum, Benjamin P. Bowen, Trent Northen, Michael T. Guarnieri, Shawn R. Starkenburg, Igor V. Grigoriev
Software Mentions: 5
Published: about 3 years ago
10.3390/ijms20246207
Profiles of Long Non-Coding RNAs and mRNA Expression in Human Macrophages Regulated by Interleukin-27Cited by: 11
Author(s): Xiaojun Hu, Suranjana Goswami, Ju Qiu, Qian Chen, Sylvain Laverdure, Brad T. Sherman, Tomozumi Imamichi
Software Mentions: 5
Published: over 4 years ago
10.1093/molbev/msab122
Role of Sex-Concordant Gene Expression in the Coevolution of Exaggerated Male and Female Genitalia in a Beetle GroupCited by: 4
Author(s): Shota Nomura, Tomochika Fujisawa, Teiji Sota
Software Mentions: 5
Published: about 3 years ago
10.1371/journal.pntd.0004992
Meta-transcriptome Profiling of the Human-Leishmania braziliensis Cutaneous LesionCited by: 54
Author(s): Stephen M Christensen, Laura A. L. Dillon, Lucas P. Carvalho, Sara Passos, Fernanda O. Novais, V. K. Hughitt, Daniel P. Beiting, Edgar M. Carvalho, Phillip Scott, Najib M. El-Sayed, David M. Mosser
Software Mentions: 5
Published: over 7 years ago
10.1038/s41598-020-70581-2
Transcriptomic determinants of the response of ST-111 Pseudomonas aeruginosa AG1 to ciprofloxacin identified by a top-down systems biology approachCited by: 12
Author(s): José Arturo Molina-Mora, Diana Chinchilla-Montero, Maribel Chavarría-Azofeifa, Alejandro Ulloa-Morales, Rebeca Campos-Sánchez, Rodrigo Mora-Rodríguez, Leming Shi, Fernando García
Software Mentions: 5
Published: almost 4 years ago
10.1111/jcmm.15271
Systematic prediction of key genes for ovarian cancer by co‐expression network analysisCited by: 12
Author(s): Mingyuan Wang, Jinjin Wang, Jinglan Liu, Lili Zhu, Heng Ma, Jian Zou, Wei Wu, Kangkai Wang
Software Mentions: 4
Published: about 4 years ago
10.15252/msb.20156108
Cell cycle networks link gene expression dysregulation, mutation, and brain maldevelopment in autistic toddlersCited by: 72
Author(s): Tiziano Pramparo, Michael Lombardo, Kathleen Campbell, Cynthia Carter Barnes, Steven Marinero, Stephanie Solso, Julia Young, Maisi Mayo, Anders M. Dale, Clelia Ahrens‐Barbeau, Sarah Murray, Linda Lopez, Nathan E. Lewis, Karen Pierce, Eric Courchesne
Software Mentions: 4
Published: over 8 years ago
10.3389/pore.2021.601693
Identification of Biomarkers Related to Immune Cell Infiltration in Hepatocellular Carcinoma Using Gene Co-Expression NetworkCited by: 2
Author(s): Wanbang Zhou, Yiyang Chen, Ruixing Luo, Zifan Li, Guanwei Jiang, Xi Ou
Software Mentions: 4
Published: about 3 years ago
10.1371/journal.pbio.3000187
Single-cell RNA sequencing reveals regulatory mechanism for trophoblast cell-fate divergence in human peri-implantation conceptusesCited by: 49
Author(s): Bo Lv, Qin An, Qiao Zeng, Xunyi Zhang, Ping Lü, Yanqiu Wang, Xianmin Zhu, Yao Ji, Guoping Fan, Zhigang Xue
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pcbi.1004005
Systems Level Analysis of Systemic Sclerosis Shows a Network of Immune and Profibrotic Pathways Connected with Genetic PolymorphismsCited by: 110
Author(s): James Mahoney, Jaclyn N. Taroni, Viktor Martyanov, Tammara A. Wood, Casey S. Greene, Patricia A. Pioli, Monique Hinchcliff, Michael L. Whitfield
Software Mentions: 4
Published: over 9 years ago
10.1186/s12918-016-0315-y
A novel integrated gene coexpression analysis approach reveals a prognostic three-transcription-factor signature for glioma molecular subtypesCited by: 8
Author(s): Sujuan Wu, Junyi Li, Mushui Cao, Jing Yang, Yixue Li, Yuanyuan Li
Software Mentions: 4
Published: almost 8 years ago
10.1371/journal.pone.0177750
Inflammatory and apoptotic remodeling in autonomic nervous system following myocardial infarctionCited by: 23
Author(s): Chen Gao, Kimberly Howard‐Quijano, Christoph Rau, Tatsuo Takamiya, Yang Song, Kalyanam Shivkumar, Yibin Wang, Aman Mahajan
Software Mentions: 4
Published: about 7 years ago
10.1371/journal.pone.0210672
Identification of new regulators through transcriptome analysis that regulate anthocyanin biosynthesis in apple leaves at low temperaturesCited by: 28
Author(s): Tingting Song, Keting Li, Ting Wu, Yi Wang, Xinzhong Zhang, Xuefeng Xu, Yuncong Yao, Zhenhai Han
Software Mentions: 4
Published: over 5 years ago
10.1186/s12920-021-00960-9
Gene network analyses unveil possible molecular basis underlying drug-induced glaucomaCited by: 3
Author(s): Ruofan Ding, Qian Yu, Ke Liu, Juan Du, Huajun Yin, Zhi-Liang Ji
Software Mentions: 4
Published: about 3 years ago
10.3389/fnagi.2019.00083
Identification of Temporal Characteristic Networks of Peripheral Blood Changes in Alzheimer’s Disease Based on Weighted Gene Co-expression Network AnalysisCited by: 18
Author(s): Run-Hong Tang, Huayan Liu
Software Mentions: 4
Published: about 5 years ago
10.3389/fcimb.2021.663068
Taxonomic and Functional Dysregulation in Salivary Microbiomes During Oral CarcinogenesisCited by: 7
Author(s): Jiung Wen Chen, Jer Horng Wu, Wei Fan Chiang, Yuh Ling Chen, Wei Wu, Li-Wha Wu
Software Mentions: 4
Published: over 2 years ago
10.1186/s12864-020-06909-z
Integrating RNA-Seq with GWAS reveals novel insights into the molecular mechanism underpinning ketosis in cattleCited by: 23
Author(s): Ze Yan, Hanyu Huang, Ellen Freebern, D. R. dos Santos, Dongmei Dai, Jingfang Si, Chengbin Ma, Jie Cao, Gang Guo, George E. Liu, Li Ma, Lingzhao Fang, Yi Zhang
Software Mentions: 4
Published: almost 4 years ago
10.1186/s13073-016-0355-3
Integrative network analysis of nineteen brain regions identifies molecular signatures and networks underlying selective regional vulnerability to Alzheimer’s diseaseCited by: 191
Author(s): Minghui Wang, Panos Roussos, Andrew McKenzie, Xianxiao Zhou, Yuji Kajiwara, Kristen J. Brennand, Gabriele C. DeLuca, John F. Crary, Patrizia Casaccia, Joseph D. Buxbaum, Michelle E. Ehrlich, Sam Gandy, Alison M. Goate, Pavel Katsel, Eric E. Schadt, Vahram Haroutunian, Bin Zhang
Software Mentions: 4
Published: over 7 years ago
10.3390/s19204402
A Physical Model-Based Observer Framework for Nonlinear Constrained State Estimation Applied to Battery State EstimationCited by: 8
Author(s): Jonathan Brembeck
Software Mentions: 4
Published: over 4 years ago
10.3390/ijms19092500
Co-Expression Network Analysis Identifies miRNA–mRNA Networks Potentially Regulating Milk Traits and Blood MetabolitesCited by: 12
Author(s): Adolf A. Ammah, Duy Ngoc, Nathalie Bissonnette, Nicolas Gévry, Eveline M. Ibeagha‐Awemu
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12864-015-2068-1
A novel approach identifies the first transcriptome networks in bats: a new genetic model for vocal communicationCited by: 15
Author(s): Pedro Rodenas-Cuadrado, Xiaowei Sylvia Chen, Lutz Wiegrebe, Uwe Firzlaff, Sonja C. Vernes
Software Mentions: 3
Published: over 8 years ago
10.3389/fgene.2020.00542
Identification of Four Potential Biomarkers Associated With Coronary Artery Disease in Non-diabetic Patients by Gene Co-expression Network AnalysisCited by: 12
Author(s): Min Jiao, Jingtian Li, Quan Zhang, Xiufeng Xu, Ruidong Li, Peikang Dong, Chun Meng, Yang Li, Lijuan Wang, Wanpeng Qi, Kang Kai, Hongjie Wang, Tao Wang
Software Mentions: 3
Published: almost 4 years ago
10.1186/s12864-020-07037-4
Gene expression within the periaqueductal gray is linked to vocal behavior and early-onset parkinsonism in Pink1 knockout ratsCited by: 12
Author(s): Cynthia A. Kelm‐Nelson, Stephen C. Gammie
Software Mentions: 3
Published: over 3 years ago
10.1186/s12864-018-4967-4
Comparative transcriptome analysis of the interaction between Actinidia chinensis var. chinensis and Pseudomonas syringae pv. actinidiae in absence and presence of acibenzolar-S-methylCited by: 30
Author(s): V. Michelotti, Antonella Lamontanara, Giampaolo Buriani, Luigi Orrù, Antonio Cellini, Irene Donati, J. L. Vanneste, Luigi Cattivelli, G. Tacconi, Francesco Spinelli
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12870-017-1143-y
Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genesCited by: 80
Author(s): Tan Ming, Dan Cheng, Yunhai Yang, Guoqiang Zhang, Mengjie Qin, Jun Chen, Yahua Chen, Mingyi Jiang
Software Mentions: 3
Published: over 6 years ago
10.3389/fonc.2020.01397
Exploring Specific miRNA-mRNA Axes With Relationship to Taxanes-Resistance in Breast CancerCited by: 12
Author(s): Danni Chen, Chang Bao, Feng Zhao, Haogang Yu, Guansheng Zhong, Liang Xu, Senxiang Yan
Software Mentions: 3
Published: almost 4 years ago
10.3389/fpls.2021.690095
Transcriptomic and Weighted Gene Co-expression Correlation Network Analysis Reveal Resveratrol Biosynthesis Mechanisms Caused by Bud Sport in Grape BerryCited by: 3
Author(s): Lu Feng, Yunling Ye, Jialing Zhou, Huijuan Jia, Xiaoli Zhu, Jiayu Shi, Ziyue Zhang, Nan Shen, Li Wang
Software Mentions: 3
Published: almost 3 years ago
10.3390/genes11030324
Genome-Wide Transcriptomic Analysis Reveals a Regulatory Network of Oxidative Stress-Induced Flowering Signals Produced in Litchi LeavesCited by: 8
Author(s): Xingyu Lu, Shanlin Yu, Peitao Lü, Houbin Chen, Silin Zhong, Biyan Zhou
Software Mentions: 3
Published: about 4 years ago
10.1186/s12870-020-02419-y
Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiencyCited by: 16
Author(s): Yang Xiao-ling, Xiuzhong Xia, Zhen Yu, Baoxuan Nong, Zongqiong Zhang, Yanyan Wu, Qian Tian, Weiying Zeng, Ju Gao, Weiyong Zhou, He Liang, Danting Li, Gaofeng Deng
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0105685
Analysis of Papaya Cell Wall-Related Genes during Fruit Ripening Indicates a Central Role of Polygalacturonases during Pulp SofteningCited by: 56
Author(s): João Paulo Fabi, Sabrina Garcia Broetto, Sarah Lígia Garcia Leme da Silva, Silin Zhong, Franco Maria Lajolo, João Roberto Oliveira do Nascimento
Software Mentions: 3
Published: almost 10 years ago
10.1038/srep19615
Overlapping signatures of chronic pain in the DNA methylation landscape of prefrontal cortex and peripheral T cellsCited by: 67
Author(s): Renaud Massart, Sergiy Dymov, Magali Millecamps, Matthew Suderman, Stéphanie Grégoire, Kevin Koenigs, Sebastian Alvarado, Maral Tajerian, Laura S. Stone, Moshe Szyf
Software Mentions: 3
Published: over 8 years ago
10.7717/peerj.7515
Network-based approach to identify biomarkers predicting response and prognosis for HER2-negative breast cancer treatment with taxane-anthracycline neoadjuvant chemotherapyCited by: 7
Author(s): Jiang Cui, Shaofei Wu, Lei Jiang, Zhichao Gao, Xiaorui Li, Yangyang Duan, Na Li, Tao Sun
Software Mentions: 3
Published: over 4 years ago
10.1186/s12859-017-1490-6
Multiple network algorithm for epigenetic modules via the integration of genome-wide DNA methylation and gene expression dataCited by: 51
Author(s): Xiaoke Ma, Zaiyi Liu, Zhongyuan Zhang, Xiaotai Huang, Wanxin Tang
Software Mentions: 3
Published: over 7 years ago
10.18632/oncotarget.12340
Integrative analysis of protein-coding and non-coding RNAs identifies clinically relevant subtypes of clear cell renal cell carcinomaCited by: 11
Author(s): Zongcheng Li, Yaowen Chen, Shuofeng Hu, Jian Zhang, Jiaqi Wu, Wu Ren, Ningsheng Shao, Xiaomin Ying
Software Mentions: 3
Published: over 7 years ago
10.1186/s12920-019-0613-5
Improved cell composition deconvolution method of bulk gene expression profiles to quantify subsets of immune cellsCited by: 19
Author(s): Yen Jung Chiu, Yi Hsuan Hsieh, Yen Hua Huang
Software Mentions: 3
Published: over 4 years ago
10.3390/ijms20235922
Transcriptomic and Co-Expression Network Profiling of Shoot Apical Meristem Reveal Contrasting Response to Nitrogen Rate between Indica and Japonica Rice SubspeciesCited by: 10
Author(s): Xiaoxiang Zhang, Juan Zhou, Niansheng Huang, Lanjing Mo, Minjia Lv, Yujiao Gao, Chen Chen, Yin Su, Jianhua Ju, Guichun Dong, Yong Zhou, Zefeng Yang, Aihong Li, Yulong Wang, Jianye Huang, Youli Yao
Software Mentions: 3
Published: over 4 years ago
10.1186/1471-2105-12-322
Strategies for aggregating gene expression data: The collapseRows R functionCited by: 257
Author(s): Jeremy A. Miller, Chaochao Cai, Peter Langfelder, Daniel H. Geschwind, Sunil M. Kurian, Daniel R. Salomon, Steve Horvath
Software Mentions: 2
Published: almost 13 years ago
10.1002/jcb.26598
Five key lncRNAs considered as prognostic targets for predicting pancreatic ductal adenocarcinomaCited by: 56
Author(s): Jukun Song, Qian Xu, Haodeng Zhang, Xinhai Yin, Chen Zhu, Ke Zhao, Jianguo Zhu
Software Mentions: 2
Published: over 6 years ago
10.3389/fgene.2020.00302
Analysis of the Interaction Network of Hub miRNAs-Hub Genes, Being Involved in Idiopathic Pulmonary Fibers and Its Emerging Role in Non-small Cell Lung CancerCited by: 21
Author(s): Yu Dong, Xiaolan Ruan, Jingyu Huang, Xiaoping Li, Hongwei Ma, Chen Chen, Weidong Hu, Sheng Li
Software Mentions: 2
Published: about 4 years ago
10.15252/msb.20167430
Systematic protein–protein interaction mapping for clinically relevant human <scp>GPCR</scp>sCited by: 62
Author(s): Kate Sokolina, Saranya Kittanakom, Jamie Snider, Max Kotlyar, Pascal Maurice, Jorge Gandía, Abla Benleulmi-Chaachoua, Kenjiro Tadagaki, Atsuro Oishi, Victoria Wong, Ramy H. Malty, Viktor Deineko, Hiroyuki Aoki, Shahreen Amin, Zhong Yao, Xavier Morató, David Otasek, Hiroyuki Kobayashi, Javier Menéndez, Daniel Auerbach, Stéphane Angers, Nataša Pržulj, Michel Bouvier, Mohan Babu, Francisco Ciruela, Ralf Jockers, Igor Jurišica, Igor Štagljar
Software Mentions: 2
Published: over 7 years ago
10.1093/jxb/erv433
Transcriptome analysis of an apple (<i>Malus</i>×<i>domestica</i>) yellow fruit somatic mutation identifies a gene network module highly associated with anthocyanin and epigenetic regulationCited by: 202
Author(s): Islam El‐Sharkawy, Dong Liang, Kenong Xu
Software Mentions: 2
Published: over 8 years ago
10.18632/oncotarget.7416
Quantitative proteomics reveals the novel co-expression signatures in early brain development for prognosis of glioblastoma multiformeCited by: 27
Author(s): Xuexin Yu, Feng Li, Dianming Liu, Lianfeng Zhang, Bo Wu, Wei Jiang, Zujing Han, Shujun Cheng
Software Mentions: 2
Published: over 8 years ago
10.7717/peerj.7968
Identification of key genes and pathways associated with cholangiocarcinoma development based on weighted gene correlation network analysisCited by: 17
Author(s): Jingwei Liu, Weixin Liu, Hao Li, Qiuping Deng, Meiqi Yang, Xuemei Li, Liang Zeng
Software Mentions: 2
Published: over 4 years ago
10.3389/fphar.2021.637253
IMCC: A Novel Quantitative Approach Revealing Variation of Global Modular Map and Local Inter-Module Coordination Among Differential Drug’s Targeted Cerebral Ischemic NetworksCited by: 0
Author(s): Pengqian Wang, Yanan Yu, Jun Li, Bing Li, Yingying Zhang, Dongfeng Li, Wenjuan Xu, Qiong Liu, Zhong Wang
Software Mentions: 2
Published: about 3 years ago
10.1002/2211-5463.12695
Effects of acidification on the proteome during early development of <i>Babylonia areolata</i>Cited by: 2
Author(s): Guilan Di, Yanfei Li, Guorong Zhu, Xiaoyu Guo, Hui Li, Meng Huang, Minghui Shen, Caihuan Ke
Software Mentions: 2
Published: almost 5 years ago
10.3389/fpls.2016.01974
Comparative Transcriptomics Atlases Reveals Different Gene Expression Pattern Related to Fusarium Wilt Disease Resistance and Susceptibility in Two Vernicia SpeciesCited by: 13
Author(s): Yicun Chen, Hengfu Yin, Ming Gao, Huiping Zhu, Qiyan Zhang, Yangdong Wang
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0020448
Unraveling Molecular Signatures of Immunostimulatory Adjuvants in the Female Genital Tract through Systems BiologyCited by: 16
Author(s): Madelene Lindqvist, Intawat Nookaew, Ingrid Brinkenberg, Emma Samuelson, Karolina Thörn, Jens Nielsen, Ali M. Harandi
Software Mentions: 1
Published: almost 13 years ago
10.1002/cam4.3235
Discordance between pediatric self‐report and parent proxy‐report symptom scores and creation of a dyad symptom screening tool (co‐SSPedi)Cited by: 11
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Software Mentions: 1
Published: almost 4 years ago
10.1111/cns.13460
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Author(s): Jiaquan Lin, He Tian, Xiaojun Zhao, Sen Lin, Daoyong Li, Yuan‐ye Liu, Chang Xu, Xifan Mei
Software Mentions: 1
Published: over 3 years ago
10.1017/bpp.2020.48
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Author(s): Dario Krpan, Fadi Makki, Nabil Saleh, Suzanne Brink, Helena Vlahinja Klauznicer
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2020.01988
Development of a New High-Cell Density Fermentation Strategy for Enhanced Production of a Fungus β-Glucosidase in Pichia pastorisCited by: 15
Author(s): Wan-Cang Liu, Haibo Xiang, Tao Zhang, Xu Pang, Jing Su, Hongyu Liu, Ma B, Liyan Yu
Software Mentions: 1
Published: almost 4 years ago
10.3389/fpsyg.2019.02650
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Software Mentions: 1
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10.14336/AD.2020.1007
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Software Mentions: 1
Published: over 3 years ago