Data

Tools

Indexes

Applications

Experiments

Papers

cran: lsmeans
Least-Squares Means
Papers that mentioned: 758
Very Likely Science (83)
pypi: Sickle
A lightweight OAI client library for Python
Papers that mentioned: 740
Very Likely Science (100)
pypi: engine
Pure python extensible SQL database engine supporting NULL values. Formally SnakeSQL.
Papers that mentioned: 732
Very Likely Science (65)
cran: HyPhy
Macroevolutionary phylogentic analysis of species trees and gene trees
Papers that mentioned: 722
Very Likely Science (85)
pypi: HyPhy
HyPhy package interface library
Papers that mentioned: 722
Very Likely Science (100)
pypi: meta
Byte-code and ast programming tools
Papers that mentioned: 706
Very Likely Science (80)
cran: meta
General Package for Meta-Analysis
Papers that mentioned: 706
Very Likely Science (100)
bioconductor: DEGseq
Identify Differentially Expressed Genes from RNA-seq data
Papers that mentioned: 697
Very Likely Science (100)
pypi: PsychoPy
PsychoPy provides easy, precise, flexible experiments in behavioural sciences
Papers that mentioned: 691
Very Likely Science (90)
pypi: MAST
MAterials Simulation Toolkit
Papers that mentioned: 668
Very Likely Science (75)
bioconductor: MAST
Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668
Very Likely Science (100)
pypi: matlab
Matlab for python
Papers that mentioned: 666
Very Likely Science (65)
cran: matlab
'MATLAB' Emulation Package
Papers that mentioned: 666
Very Likely Science (75)
cran: SPARQL
SPARQL client
Papers that mentioned: 660
Very Likely Science (75)
bioconductor: topGO
Enrichment Analysis for Gene Ontology
Papers that mentioned: 652
Very Likely Science (100)
pypi: FAST
FAST: Framework for Agile Software Testing
Papers that mentioned: 651
Very Likely Science (80)
cran: factoextra
Extract and Visualize the Results of Multivariate Data Analyses
Papers that mentioned: 650
Very Likely Science (85)
pypi: pandas
Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640
Very Likely Science (100)
cran: caret
Classification and Regression Training
Papers that mentioned: 630
Very Likely Science (100)
pypi: caret
A Python Interface to Asterisk
Papers that mentioned: 630
Very Likely Science (65)
cran: COBRA
Nonlinear Aggregation of Predictors
Papers that mentioned: 629
Very Likely Science (75)
cran: VennDiagram
Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626
Very Likely Science (83)
pypi: Analyze
Analyze is a python library that provides comprehensive statistical analysis of a dataframe in 5 lines of code. It creates significant insight for data scientists, analysts and machine learning engineers, enabling quick understanding of a dataset.
Papers that mentioned: 615
Very Likely Science (90)
bioconductor: COMPASS
Combinatorial Polyfunctionality Analysis of Single Cells
Papers that mentioned: 614
Very Likely Science (100)
pypi: perl
Perl as a Python package
Papers that mentioned: 604
Very Likely Science (65)
cran: ROCR
Visualizing the Performance of Scoring Classifiers
Papers that mentioned: 596
Very Likely Science (75)
cran: phytools
Phylogenetic Tools for Comparative Biology (and Other Things)
Papers that mentioned: 586
Very Likely Science (100)
pypi: phytools
Useful tools for physicists.
Papers that mentioned: 586
Very Likely Science (80)
cran: ART
Aligned Rank Transform for Nonparametric Factorial Analysis
Papers that mentioned: 580
Very Likely Science (85)
cran: HMM
Hidden Markov Models
Papers that mentioned: 577
Very Likely Science (75)
pypi: script
Help for writing shell scripts in Python
Papers that mentioned: 575
Very Likely Science (65)
pypi: environment
This library provides parsing and validation of environment variables.
Papers that mentioned: 569
Very Likely Science (65)
bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
Very Likely Science (90)
cran: MCL
Markov Cluster Algorithm
Papers that mentioned: 563
Very Likely Science (93)
cran: raster
Geographic Data Analysis and Modeling
Papers that mentioned: 561
Very Likely Science (85)
pypi: sklearn
deprecated sklearn package, use scikit-learn instead
Papers that mentioned: 559
Very Likely Science (65)
bioconductor: SIM
Integrated Analysis on two human genomic datasets
Papers that mentioned: 554
Very Likely Science (100)
cran: SPOT
Sequential Parameter Optimization Toolbox
Papers that mentioned: 551
Very Likely Science (85)
cran: AR
Another Look at the Acceptance-Rejection Method
Papers that mentioned: 533
Very Likely Science (75)
pypi: Manager
Manager is the Components Manager package of Umbra, sIBL_GUI and sIBL_Reporter.
Papers that mentioned: 524
Very Likely Science (65)
bioconductor: RTCA
Open-source toolkit to analyse data from xCELLigence System (RTCA)
Papers that mentioned: 516
Very Likely Science (90)
cran: BET
Binary Expansion Testing
Papers that mentioned: 514
Very Likely Science (83)
bioconductor: sva
Surrogate Variable Analysis
Papers that mentioned: 511
Very Likely Science (100)
cran: STAT
Interactive Document for Working with Basic Statistical Analysis
Papers that mentioned: 508
Very Likely Science (93)
bioconductor: minfi
Analyze Illumina Infinium DNA methylation arrays
Papers that mentioned: 506
Very Likely Science (100)
pypi: Harmony
Harmony Programming Language
Papers that mentioned: 504
Very Likely Science (65)
cran: IMPACT
The Impact of Items
Papers that mentioned: 502
Very Likely Science (75)
pypi: 2
Papers that mentioned: 499
Unlikely Science (0)
pypi: DataAnalysis
Pacote de pré-processamento de texto
Papers that mentioned: 493
Very Likely Science (65)
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
Very Likely Science (83)
pypi: Library
Useful library package stuff.
Papers that mentioned: 489
Very Likely Science (65)
bioconductor: ADAM
ADAM: Activity and Diversity Analysis Module
Papers that mentioned: 482
Very Likely Science (100)
cran: survivalROC
Time-Dependent ROC Curve Estimation from Censored Survival Data
Papers that mentioned: 479
Very Likely Science (75)
bioconductor: ACE
Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing
Papers that mentioned: 478
Very Likely Science (100)
pypi: Calculator
Performs basic calculation operations
Papers that mentioned: 478
Very Likely Science (65)
cran: MCMCglmm
MCMC Generalised Linear Mixed Models
Papers that mentioned: 477
Very Likely Science (83)
bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
Very Likely Science (100)
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
Very Likely Science (100)
pypi: plyr
UNKNOWN
Papers that mentioned: 468
Very Likely Science (65)
pypi: imagej
Python wrapper for ImageJ
Papers that mentioned: 467
Very Likely Science (100)
cran: mice
Multivariate Imputation by Chained Equations
Papers that mentioned: 455
Very Likely Science (100)
pypi: mice
Multi-iteration Stochastic Estimator
Papers that mentioned: 455
Very Likely Science (80)
cran: uclust
Clustering and Classification Inference with U-Statistics
Papers that mentioned: 454
Very Likely Science (85)
cran: Spectrum
Fast Adaptive Spectral Clustering for Single and Multi-View Data
Papers that mentioned: 450
Very Likely Science (75)
pypi: linux
Papers that mentioned: 450
Very Likely Science (65)
cran: CCA
Canonical Correlation Analysis
Papers that mentioned: 449
Very Likely Science (93)
bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
Very Likely Science (100)
pypi: Silva
Silva Content Management System
Papers that mentioned: 445
Likely Science (40)
cran: pvclust
Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling
Papers that mentioned: 442
Very Likely Science (75)
pypi: T
H
Papers that mentioned: 437
Very Likely Science (65)
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
Very Likely Science (90)
cran: rpart
Recursive Partitioning and Regression Trees
Papers that mentioned: 431
Very Likely Science (100)
bioconductor: CAMERA
Collection of annotation related methods for mass spectrometry data
Papers that mentioned: 429
Very Likely Science (75)
pypi: language
Basic tools for working with natural language text data
Papers that mentioned: 427
Very Likely Science (65)
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
Very Likely Science (95)
cran: e1071
Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
Papers that mentioned: 419
Very Likely Science (85)
pypi: and
A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 418
Very Likely Science (65)
pypi: M
M
Papers that mentioned: 418
Very Likely Science (65)
pypi: cluster
Simple clustering library for python.
Papers that mentioned: 416
Very Likely Science (80)
cran: cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Papers that mentioned: 416
Very Likely Science (85)
bioconductor: DECIPHER
Tools for curating, analyzing, and manipulating biological sequences
Papers that mentioned: 415
Very Likely Science (98)
pypi: cufflinks
Productivity Tools for Plotly + Pandas
Papers that mentioned: 415
Very Likely Science (100)
cran: picante
Integrating Phylogenies and Ecology
Papers that mentioned: 414
Very Likely Science (85)
cran: word2vec
Distributed Representations of Words
Papers that mentioned: 413
Very Likely Science (90)
pypi: word2vec
Wrapper for Google word2vec
Papers that mentioned: 413
Very Likely Science (85)
cran: SKAT
SNP-Set (Sequence) Kernel Association Test
Papers that mentioned: 407
Very Likely Science (83)
pypi: BD
Bangladesh Details with postal code
Papers that mentioned: 404
Very Likely Science (65)
pypi: py
library with cross-python path, ini-parsing, io, code, log facilities
Papers that mentioned: 403
Very Likely Science (65)
cran: GE
General Equilibrium Modeling
Papers that mentioned: 401
Very Likely Science (85)
pypi: plink
A full featured Tk-based knot and link editor
Papers that mentioned: 399
Very Likely Science (100)
cran: plink
IRT Separate Calibration Linking Methods
Papers that mentioned: 399
Very Likely Science (100)
cran: ANTs
Animal Network Toolkit Software
Papers that mentioned: 393
Very Likely Science (85)
pypi: system
Papers that mentioned: 393
Unlikely Science (0)
pypi: GeoDa
Papers that mentioned: 389
Unlikely Science (0)
cran: BEST
Bayesian Estimation Supersedes the t-Test
Papers that mentioned: 382
Very Likely Science (85)
pypi: Explorer
A module to control the Explorer HAT Raspberry Pi Addon Board
Papers that mentioned: 379
Very Likely Science (65)
bioconductor: mixOmics
Omics Data Integration Project
Papers that mentioned: 375
Very Likely Science (90)
cran: glmmTMB
Generalized Linear Mixed Models using Template Model Builder
Papers that mentioned: 373
Very Likely Science (100)
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
Very Likely Science (100)
pypi: Ion
Ion is an MVC Web Framework
Papers that mentioned: 368
Very Likely Science (65)