bioconductor: COMPASS | Projects | Ecosyste.ms: Papers

10.12688/f1000research.11622.3

CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets
Cited by: 205
Author(s): Małgorzata Nowicka, Carsten Krieg, Helena L. Crowell, Lukas M. Weber, Felix J. Hartmann, Silvia Guglietta, Burkhard Becher, Mitchell P. Levesque, Mark D. Robinson
Software Mentions: 15
Published: almost 5 years ago

10.1101/2020.11.25.20235150

T cell and antibody functional correlates of severe COVID-19
Cited by: 8
Author(s): Krystle K. Q. Yu, Stephanie Fischinger, Malisa T. Smith, Caroline Atyeo, Deniz Cizmeci, Caitlin R Wolf, Erik D. Layton, Jennifer Logue, Melissa S. Aguilar, Kiel Shuey, Carolin Loos, Jingyou Yu, Nicholas Franko, Robert Y. Choi, Anna Wald, Dan H. Barouch, David M. Koelle, Douglas A. Lauffenburger, Helen Y. Chu, Galit Alter, Chetan Seshadri
Software Mentions: 8
Published: over 3 years ago

10.1186/1472-6807-13-2

Designing and benchmarking the MULTICOM protein structure prediction system
Cited by: 25
Author(s): Jilong Li, Xin Deng, Jesse Eickholt, Jianlin Cheng
Software Mentions: 7
Published: about 11 years ago

10.3389/fpsyt.2021.680811

TAPAS: An Open-Source Software Package for Translational Neuromodeling and Computational Psychiatry
Cited by: 55
Author(s): Stefan Frässle, Eduardo A. Aponte, Saskia Bollmann, Kay H. Brodersen, Ting Cao, Olivia K. Harrison, Sarah M. Harrison, Jakob Heinzle, Sandra Iglesias, Lars Kasper, Ekaterina I. Lomakina, Christoph Mathys, Matthias Müller-Schrader, Inês Pereira, Frederike H. Petzschner, Sudhir Raman, Dario Schöbi, Birte Toussaint, Lilian Weber, Yu Yao, Klaas Enno Stephan
Software Mentions: 7
Published: almost 3 years ago

10.1186/s12872-021-02092-5

The GEnetic Syntax Score: a genetic risk assessment implementation tool grading the complexity of coronary artery disease—rationale and design of the GESS study
Cited by: 11
Author(s): Ioannis S. Vizirianakis, Fani Chatzopoulou, Αndreas S. Papazoglou, Efstratios Karagiannidis, Georgios Sofdis, Nikolaos Stalikas, Christos Stefopoulos, Konstantinos Kyritsis, Nikolaos Mittas, Nikoleta F. Theodoroula, Aggeliki Lampri, Eleni Mezarli, Αναστάσιος Κάρτας, Dimitrios Chatzidimitriou, Anna Papa-Konidari, Eleftherios Angelis, Ηaralambos Karvounis, Georgios Sianos
Software Mentions: 7
Published: almost 3 years ago

10.1371/journal.pcbi.1009197

Multidimensional analysis of immune responses identified biomarkers of recent Mycobacterium tuberculosis infection
Cited by: 1
Author(s): Tessa Lloyd, Pia Steigler, Cheleka A M Mpande, Virginie Rozot, Boitumelo Mosito, Constance Schreuder, Timothy D. Reid, Mark Hatherill, Thomas J. Scriba, Francesca Little, Elisa Nemes
Software Mentions: 6
Published: almost 3 years ago

10.1172/jci.insight.146242

Comorbid illnesses are associated with altered adaptive immune responses to SARS-CoV-2
Cited by: 36
Author(s): Krystle K. Q. Yu, Stephanie Fischinger, Malisa T. Smith, Caroline Atyeo, Deniz Cizmeci, Caitlin R Wolf, Erik D. Layton, Jennifer K. Logue, Melissa S. Aguilar, Kiel Shuey, Carolin Loos, Jingyou Yu, Nicholas Franko, Robert Y. Choi, Anna Wald, Dan H. Barouch, David M. Koelle, Douglas A. Lauffenburger, Helen Y. Chu, Galit Alter, Chetan Seshadri
Software Mentions: 6
Published: about 3 years ago

10.1140/epjc/s10052-014-2981-5

QCD and strongly coupled gauge theories: challenges and perspectives
Cited by: 407
Author(s): Nora Brambilla, S. Eidelman, P. Foka, Susan Gardner, A. S. Kronfeld, Mark Alford, Reinhard Alkofer, Mathias Butenschoen, Thomas D. Cohen, Johanna Erdmenger, L. Fabbietti, M. Faber, J. L. Goity, B. Ketzer, Huey‐Wen Lin, Felipe J. Llanes-Estrada, Harvey B. Meyer, P. Pakhlov, Elisabetta Pallante, M. I. Polikarpov, H. Sazdjian, Andreas Schmitt, W. M. Snow, Antonio Vairo, R. Vogt, Aleksi Vuorinen, Hartmut Wittig, Peter Arnold, P. Christakoglou, P. Di Nezza, Z. Fodor, Xavier Garcia i Tormo, Roman Höllwieser, M. A. Janik, A. Kalweit, D. Keane, Elias Kiritsis, A. Mischke, R. Mizuk, G. Odyniec, Kyriakos Papadodimas, Antonio Pich, R. Pittau, Jian Qiu, Giulia Ricciardi, Carlos A. Salgado, Kai Schwenzer, N. G. Stefanis, Georg von Hippel, В. И. Захаров
Software Mentions: 6
Published: over 9 years ago

10.1186/1471-2105-8-314

A comprehensive system for evaluation of remote sequence similarity detection
Cited by: 21
Author(s): Yuanyuan Qi, Ruslan I. Sadreyev, Yong Wang, Bong-Hyun Kim, Nick V. Grishin
Software Mentions: 6
Published: over 16 years ago

10.1371/journal.pgen.1008037

Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast
Cited by: 24
Author(s): Kevin S. Myers, Nicholas M. Riley, Matthew E. MacGilvray, Trey K. Sato, Mick McGee, Justin Heilberger, Joshua J. Coon, Audrey P. Gasch
Software Mentions: 6
Published: about 5 years ago

10.1186/1471-2105-6-253

ProfNet, a method to derive profile-profile alignment scoring functions that improves the alignments of distantly related proteins
Cited by: 23
Author(s): Tomas Ohlson, Arne Elofsson
Software Mentions: 5
Published: over 18 years ago

10.36834/cmej.70106

Dedicated Poster Abstracts
Cited by: 0
Author(s): Heather Hickey
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pgen.1006222

KdmB, a Jumonji Histone H3 Demethylase, Regulates Genome-Wide H3K4 Trimethylation and Is Required for Normal Induction of Secondary Metabolism in Aspergillus nidulans
Cited by: 68
Author(s): Agnieszka Gacek‐Matthews, Harald Berger, Takahiko Sasaki, Kathrin Wittstein, Clemens Gruber, Zachary A. Lewis, Joseph Strauss
Software Mentions: 5
Published: over 7 years ago

10.1186/s13756-019-0567-6

Abstracts from the 5th International Conference on Prevention & Infection Control (ICPIC 2019)
Cited by: 10
Author(s):
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0256867

Longitudinal association between movement behaviours and depressive symptoms among adolescents using compositional data analysis
Cited by: 10
Author(s): Hugues Sampasa‐Kanyinga, Ian Colman, Dorothea Dumuid, Ian Janssen, Gary S. Goldfield, Jianli Wang, Karen A. Patte, Scott T. Leatherdale, Jean‐Philippe Chaput
Software Mentions: 5
Published: over 2 years ago

10.1093/gigascience/giaa007

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines
Cited by: 79
Author(s): Stephen J. Bush, Dona Foster, David W Eyre, Emily L. Clark, Nicola De Maio, Liam P. Shaw, Nicole Stoesser, Tim Peto, Derrick W. Crook, A Sarah Walker
Software Mentions: 4
Published: over 4 years ago

10.1186/s12859-017-1911-6

Reference-guided de novo assembly approach improves genome reconstruction for related species
Cited by: 73
Author(s): Heidi E. L. Lischer, Kentaro Shimizu
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.02304

An atomic-resolution view of neofunctionalization in the evolution of apicomplexan lactate dehydrogenases
Cited by: 71
Author(s): Jeffrey I. Boucher, Joseph Jacobowitz, Brian C Beckett, Scott Classen, Douglas L. Theobald
Software Mentions: 4
Published: almost 10 years ago

10.1186/1471-2105-12-83

A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models
Cited by: 11
Author(s): Juliana Silva Bernardes, Alessandra Carbone, Gerson Zaverucha
Software Mentions: 4
Published: about 13 years ago

10.1155/2014/348725

Developing eThread Pipeline Using SAGA-Pilot Abstraction for Large-Scale Structural Bioinformatics
Cited by: 6
Author(s): Anjani Ragothaman, Sairam Chowdary Boddu, Nayong Kim, Wei P. Feinstein, Michał Bryliński, Shantenu Jha, Joohyun Kim
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pntd.0007103

Reprogramming of Trypanosoma cruzi metabolism triggered by parasite interaction with the host cell extracellular matrix
Cited by: 23
Author(s): Eliciane Cevolani Mattos, Gisele André Baptista Canuto, Nubia Carolina Manchola, Rubens Daniel Miserani Magalhães, Thomas W. M. Crozier, Douglas J. Lamont, Marina Franco Maggi Tavares, Walter Colli, Michael A. J. Ferguson, Maria Júlia M. Alves
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2105-5-197

Cited by: 43
Author(s): Sara Cheek, Yuan Qi, S. Sri Krishna, Lisa N. Kinch, Nick V. Grishin
Software Mentions: 4
Published: over 20 years ago

10.1371/journal.pntd.0008764

Adults from Kisumu, Kenya have robust γδ T cell responses to Schistosoma mansoni, which are modulated by tuberculosis
Cited by: 0
Author(s): Taryn A. McLaughlin, Jeremiah Khayumbi, Joshua Ongalo, Daniel O. Matete, Joan Tonui, Benson Muchiri, Loren E. Sasser, Angela Campbell, Salim Allana, Samuel Gurrion Ouma, Felix Odhiambo Hayara, Neel R. Gandhi, Cheryl L. Day
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0046633

Using Amino Acid Physicochemical Distance Transformation for Fast Protein Remote Homology Detection
Cited by: 96
Author(s): Bin Liu, Xiaolong Wang, Qingcai Chen, Qian Dong, Xun Lan
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0166358

Accelerating Information Retrieval from Profile Hidden Markov Model Databases
Cited by: 0
Author(s): A. Faleh Tamimi, Yaqoub Ashhab, Hashem Tamimi
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2105-12-275

AlignHUSH: Alignment of HMMs using structure and hydrophobicity information
Cited by: 11
Author(s): Krishnadev Oruganty, Narayanaswamy Srinivasan
Software Mentions: 4
Published: almost 13 years ago

10.3390/ijms22179422

Application of Molecular Dynamics Simulations in the Analysis of Cyclodextrin Complexes
Cited by: 28
Author(s): Anna Mazurek, Łukasz Szeleszczuk, Tomasz Gubica
Software Mentions: 4
Published: over 2 years ago

10.3389/fnins.2018.00957

COMPASS: An Open-Source, General-Purpose Software Toolkit for Computational Psychiatry
Cited by: 16
Author(s): Ali Yousefi, Angelique C. Paulk, Ishita Basu, Jonathan L. Mirsky, Darin D. Dougherty, Emad N. Eskandar, Uri T. Eden, Alik S. Widge
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-015-0775-x

A large-scale conformation sampling and evaluation server for protein tertiary structure prediction and its assessment in CASP11
Cited by: 21
Author(s): Jilong Li, Renzhi Cao, Jianlin Cheng
Software Mentions: 3
Published: over 8 years ago

10.1017/cts.2020.552

How engagement of a diverse set of stakeholders shaped the design, implementation, and dissemination of a multicenter pragmatic trial of stroke transitional care: The COMPASS study
Cited by: 2
Author(s): Sabina B. Gesell, Sylvia Coleman, Laurie H. Mettam, Anna Johnson, Mysha Sissine, Pamela W. Duncan
Software Mentions: 3
Published: over 3 years ago

10.1002/iid3.246

Flow Plex —A tool for unbiased comprehensive flow cytometry data analysis
Cited by: 0
Author(s): Johannes Nowatzky, Ezra Resnick, Julia Manasson, Cristy Stagnar, Arshed Al-Obeidi, Olivier Manches
Software Mentions: 3
Published: about 5 years ago

10.1007/s12265-014-9583-3

Biological and Analytical Stability of a Peripheral Blood Gene Expression Score for Obstructive Coronary Artery Disease in the PREDICT and COMPASS Studies
Cited by: 13
Author(s): Susan E. Daniels, Philip Beineke, Brian Rhees, John McPherson, William E. Kraus, Gregory S. Thomas, Steven Rosenberg
Software Mentions: 3
Published: almost 10 years ago

10.1186/s12953-016-0092-y

Quantitative succinylome analysis in the liver of non-alcoholic fatty liver disease rat model
Cited by: 32
Author(s): Yang Cheng, Tianlu Hou, Ping Jian, Xianhai Zeng, Jianjie Chen
Software Mentions: 3
Published: over 8 years ago

10.12688/wellcomeopenres.9892.2

COMPASS: Continuous Open Mouse Phenotyping of Activity and Sleep Status
Cited by: 41
Author(s): L. M. Brown, Sibah Hasan, Russell G. Foster, Stuart N. Peirson
Software Mentions: 3
Published: about 7 years ago

10.1186/2047-217X-2-10

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Cited by: 584
Author(s): Keith Bradnam, Joseph Fass, A. A. Alexandrov, Paul Baranay, Michael Bechner, İnanç Birol, Sébastien Boisvert, Jarrod Chapman, Guillaume Chapuis, Rayan Chikhi, Hamidreza Chitsaz, Wen Chi Chou, Jacques Corbeil, Cristian Del Fabbro, T. Roderick Docking, Richard Durbin, Dent Earl, Scott J. Emrich, P.I. Fedotov, Nuno A. Fonseca, Ganeshkumar Ganapathy, Richard A. Gibbs, Sante Gnerre, Élénie Godzaridis, Steve Goldstein, Matthias Haimel, Giles Hall, David Haussler, Joseph Hiatt, Isaac Ho, Jason T. Howard, Martin Hunt, Shaun D. Jackman, David B. Jaffe, Erich D. Jarvis, Huaiyang Jiang, С. В. Казаков, Paul J. Kersey, Jacob O. Kitzman, James Knight, Sergey Koren, Tak Wah Lam, Dominique Lavenier, François Laviolette, Yingrui Li, Zhenyu Li, Binghang Liu, Yue Liu, Ruibang Luo, Iain MacCallum, Matthew D. MacManes, Nicolas Maillet, Sergey Melnikov, Delphine Naquin, Zemin Ning, Thomas D. Otto, Benedict Paten, Octávio S. Paulo, Adam M. Phillippy, Francisco Pina‐Martins, Michael Place, Dariusz Przybylski, Xiang Qin, Carson Qu, Filipe J. Ribeiro, Stephen Richards, Daniel S. Rokhsar, J. Graham Ruby, Simone Scalabrin, Michael C. Schatz, David C. Schwartz, Alexey Sergushichev, Ted Sharpe, Timothy I. Shaw, Jay Shendure, Yujian Shi, Jared T. Simpson, Henry Song, Fedor Tsarev, Francesco Vezzi, Riccardo Vicedomini, Bruno Miguel Vieira, Jun Wang, Kim C. Worley, Shuangye Yin, Siu Ming Yiu, Jianying Yuan, Guojie Zhang, Hao Zhang, Shiguo Zhou, Ian F Korf
Software Mentions: 3
Published: almost 11 years ago

10.6028/jres.098.035

Compass '93, Eigth Annual Conference on Computer Assurance - Gaithersburg, Md - June 14-17, 1993
Cited by: 0
Author(s): Dolores R Wallace, Elizabeth B. Lennon
Software Mentions: 3
Published: almost 31 years ago

10.1002/prot.25697

Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13
Cited by: 142
Author(s): Jie Hou, Tai Tsun Wu, Renzhi Cao, Jianlin Cheng
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0005818

Fido, a Novel AMPylation Domain Common to Fic, Doc, and AvrB
Cited by: 117
Author(s): Lisa N. Kinch, Melanie L. Yarbrough, Kim Orth, Nick V. Grishin
Software Mentions: 3
Published: almost 15 years ago

10.1186/1471-2148-5-54

Mammalian BEX, WEX and GASP genes: Coding and non-coding chimaerism sustained by gene conversion events
Cited by: 27
Author(s): Eitan Winter, Chris P. Ponting
Software Mentions: 3
Published: over 18 years ago

10.1371/journal.pone.0050200

eThread: A Highly Optimized Machine Learning-Based Approach to Meta-Threading and the Modeling of Protein Tertiary Structures
Cited by: 32
Author(s): Michał Bryliński, Daswanth Lingam
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0116688

Identification of STAT1 and STAT3 Specific Inhibitors Using Comparative Virtual Screening and Docking Validation
Cited by: 29
Author(s): Małgorzata Szeląg, Anna Czerwoniec, Joanna Wesoły, Hans A.R. Bluyssen
Software Mentions: 3
Published: about 9 years ago

10.1093/bioinformatics/btv398

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation
Cited by: 89
Author(s): Sayoni Das, David A. Lee, Ian Sillitoe, Natalie L. Dawson, Jonathan G. Lees, Christine A. Orengo
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pcbi.1004926

Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases
Cited by: 25
Author(s): David A. Lee, Sayoni Das, Natalie L. Dawson, Dragana Dobrijevic, John M. Ward, Christine A. Orengo
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pcbi.1006088

Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response
Cited by: 21
Author(s): Matthew E. MacGilvray, Evgenia Shishkova, Deborah Chasman, Michael Place, Anthony Gitter, Joshua J. Coon, Audrey P. Gasch
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2020.00483

Analysis of COMPASS, a New Comprehensive Plasmid Database Revealed Prevalence of Multireplicon and Extensive Diversity of IncF Plasmids
Cited by: 46
Author(s): Pierre-Emmanuel Douarre, Ludovic Mallet, Nicolas Radomski, Arnaud Felten, Michel‐Yves Mistou
Software Mentions: 3
Published: about 4 years ago

10.1007/s11105-012-0450-6

Biochemical and Bioinformatic Characterization of Type II Metacaspase Protein (TaeMCAII) from Wheat
Cited by: 16
Author(s): Ewa Piszczek, Małgorzata Dudkiewicz, Marcin Mielecki
Software Mentions: 3
Published: about 12 years ago

10.6028/jres.101.075

Conference Report: COMPASS '96 - The Eleventh Annual Conference on Computer Assurance, Gaithersburg, MD - June 17-21, 1996
Cited by: 0
Author(s): Karen Ferraiolo, Lucio Ippolito
Software Mentions: 3
Published: over 27 years ago

10.3390/children7120294

Early Intervention with Parents of Children with Autism Spectrum Disorders: A Review of Programs
Cited by: 27
Author(s): Liliana Paulina Rojas-Torres, Yurena Alonso-Esteban, Francisco Alcantud Marín
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms22168605

The Use of Total Thrombus Formation Analysis System as a Tool to Assess Platelet Function in Bleeding and Thrombosis Risk—A Systematic Review
Cited by: 9
Author(s): Joanna Sikora, Aleksandra Karczmarska-Wódzka, Joanna Bugieda, Przemysław Sobczak
Software Mentions: 3
Published: almost 3 years ago

10.1186/1471-2105-10-416

DescFold: A web server for protein fold recognition
Cited by: 31
Author(s): Renxiang Yan, Jing-Na Si, Chuan Wang, Ziding Zhang
Software Mentions: 3
Published: over 14 years ago

10.1016/j.ebiom.2021.103233

Immune profiling of Mycobacterium tuberculosis-specific T cells in recent and remote infection
Cited by: 16
Author(s): Cheleka A M Mpande, Virginie Rozot, Boitumelo Mosito, Munyaradzi Musvosvi, One Dintwe, Nicole Bilek, Mark Hatherill, Thomas J. Scriba, Elisa Nemes, Acs Study Team
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-018-20721-6

Network analysis of coronary artery disease risk genes elucidates disease mechanisms and druggable targets
Cited by: 42
Author(s): Harri Lempiäinen, Ingrid Brænne, Tom Michoel, Vinicius Tragante, Baiba Vilne, Tom R. Webb, Theodosios Kyriakou, Johannes Eichner, Lingyao Zeng, Christina Willenborg, Oscar Franzén, Arno Ruusalepp, Anuj Goel, Sander W. van der Laan, Claudia Biegert, Stephen E. Hamby, Husain Ahammad Talukdar, Hassan Foroughi Asl, Martin Dichgans, Tobias Dreker, Mira Graettinger, Philip Gribbon, Thorsten Kessler, Rainer Malik, Matthias Prestel, Barbara Stiller, Christine Schofield, Gérard Pasterkamp, Hugh Watkins, Nilesh J. Samani, Timo Wittenberger, Jeanette Erdmann, Heribert Schunkert, Folkert W. Asselbergs, Johan Björkegren
Software Mentions: 3
Published: about 6 years ago

10.3390/pharmaceutics8020015

Challenges, Solutions, and Quality Metrics of Personal Genome Assembly in Advancing Precision Medicine
Cited by: 12
Author(s): Wenming Xiao, Leihong Wu, Gökhan Yavaş, Vahan Simonyan, Baitang Ning, Huixiao Hong
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-021-92395-6

MULTICOM2 open-source protein structure prediction system powered by deep learning and distance prediction
Cited by: 1
Author(s): Tai Tsun Wu, Jian Liu, Zhiye Guo, Jie Hou, Jianlin Cheng
Software Mentions: 3
Published: almost 3 years ago

10.18632/oncotarget.17279

Proteomics analysis of bladder cancer invasion: Targeting EIF3D for therapeutic intervention
Cited by: 27
Author(s): Agnieszka Latosinska, Marika Mokou, Manousos Makridakis, William Mullen, Jérôme Zoidakis, Vasiliki Lygirou, Maria Frantzi, Ioannis Katafigiotis, Konstantinos Stravodimos, Marie C. Hupe, Maciej Dobrzyński, Walter Kölch, Axel S. Merseburger, Harald Mischak, Maria G. Roubelakis, Antonia Vlahou
Software Mentions: 3
Published: about 7 years ago

10.3390/polym12122800

Quantitative Analysis of Solubility Parameters and Surface Properties of Larch Bark Proanthocyanidins
Cited by: 8
Author(s): Siqi Chen, Jie Song, Liuping Du, Yanli Ma, Shixue Ren, Junxue Ren, Shujun Li
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2105-15-S11-S14

Improving protein fold recognition by random forest
Cited by: 51
Author(s): Taeho Jo, Jianlin Cheng
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.ppat.1009294

CircRNA ARFGEF1 functions as a ceRNA to promote oncogenic KSHV-encoded viral interferon regulatory factor induction of cell invasion and angiogenesis by upregulating glutaredoxin 3
Cited by: 19
Author(s): Shuang Yao, Xuemei Jia, Fei Wang, Liuxue Sheng, Pengkun Song, Yuan Cao, Hongjuan Shi, Weifei Fan, Xiangya Ding, Shou‐Jiang Gao, Chun Liu
Software Mentions: 2
Published: over 3 years ago

10.3390/polym13101658

Analysis of the Storage Stability Property of Carbon Nanotube/Recycled Polyethylene-Modified Asphalt Using Molecular Dynamics Simulations
Cited by: 28
Author(s): Caihua Yu, Qilin Yang, Dandan Wang, Wengang Zhang, Guixiang Chen, Chileshe Kapyelata
Software Mentions: 2
Published: about 3 years ago

10.1002/acm2.12123

Comparison of DVH‐based plan verification methods for VMAT: ArcCHECK‐3DVH system and dynalog‐based dose reconstruction
Cited by: 17
Author(s): Masahide Saito, Noriyuki Kadoya, Kiyokazu Sato, Kengo Ito, Suguru Dobashi, Ken Takeda, Hiroshi Oda, Keiichi Jingu
Software Mentions: 2
Published: almost 7 years ago

10.1120/jacmp.v17i2.5783

Assessment of radiobiological metrics applied to patient‐specific QA process of VMAT prostate treatments
Cited by: 9
Author(s): Francisco Clemente-Gutiérrez, C Pérez-Vara, María H. Clavo-Herranz, Concepción López-Carrizosa, J. Pérez-Regadera, Carmen Ibáñez-Villoslada
Software Mentions: 2
Published: about 8 years ago

10.3390/polym12061272

Study on Cellulose Acetate Butyrate/Plasticizer Systems by Molecular Dynamics Simulation and Experimental Characterization
Cited by: 12
Author(s): Weizhe Wang, Lijie Li, Shaohua Jin, Yalun Wang, Yu Chen
Software Mentions: 2
Published: almost 4 years ago

10.1007/s00417-013-2562-6

Efficacy of treatment with ranibizumab in patients with wet age-related macular degeneration in routine clinical care: data from the COMPASS health services research
Cited by: 73
Author(s): Armin Wolf, Anselm Kampik
Software Mentions: 2
Published: over 10 years ago

10.1186/s43058-020-00042-4

Is it time to RE-AIM? A systematic review of economic empowerment as HIV prevention intervention for adolescent girls and young women in sub-Saharan Africa using the RE-AIM framework
Cited by: 12
Author(s): Juliet Iwelunmor, Ucheoma Nwaozuru, Chisom Obiezu-Umeh, Florida Uzoaru, John E. Ehiri, Jami Curley, Oliver Ezechi, Collins O. Airhihenbuwa, Fred M. Ssewamala
Software Mentions: 2
Published: almost 4 years ago

10.3390/polym13183085

Characterization of Cure Behavior in Epoxy Using Molecular Dynamics Simulation Compared with Dielectric Analysis and DSC
Cited by: 9
Author(s): Shuang Yan, Wolfgang Verestek, Harald Zeizinger, Siegfried Schmauder
Software Mentions: 2
Published: over 2 years ago

10.1186/1471-2105-15-S2-S3

Using distances between Top-n-gram and residue pairs for protein remote homology detection
Cited by: 45
Author(s): Bin Liu, Jinghao Xu, Quanming Zou, Ruifeng Xu, Xiaolong Wang, Qingcai Chen
Software Mentions: 2
Published: over 10 years ago

10.1186/gb-2007-8-4-r67

Functional dissection of the ash2 and ash1 transcriptomes provides insights into the transcriptional basis of wing phenotypes and reveals conserved protein interactions
Cited by: 35
Author(s): Sergi Beltrán, Martín Angulo, Miguel Pignatelli, Florenci Serras, Montserrat Corominas
Software Mentions: 2
Published: over 17 years ago

10.1186/1471-2105-10-399

Considering scores between unrelated proteins in the search database improves profile comparison
Cited by: 1
Author(s): Ruslan I. Sadreyev, Yong Wang, Nick V. Grishin
Software Mentions: 2
Published: over 14 years ago

10.1186/s12911-015-0213-z

Development of a decision analytic model to support decision making and risk communication about thrombolytic treatment
Cited by: 13
Author(s): Peter McMeekin, Darren Flynn, Gary A. Ford, Helen Rodgers, Joanne Gray, Richard Thomson
Software Mentions: 2
Published: over 8 years ago

10.3389/fimmu.2017.01008

RTS,S/AS01E Malaria Vaccine Induces Memory and Polyfunctional T Cell Responses in a Pediatric African Phase III Trial
Cited by: 29
Author(s): Gemma Moncunill, Stephen C. De Rosa, Ana Ayestarán, Augusto Nhabomba, Maximillian Mpina, Kristen W. Cohen, Chenjerai Jairoce, Tobias Rutishauser, Joseph J. Campo, Jaroslaw Harezlak, Hèctor Sanz, Núria Díez-Padrisa, Nana Aba Williams, Daryl E. Morris, John J. Aponte, Clarissa Valim, Claudia Daubenberger, Carlota Dobaño, M. Juliana McElrath
Software Mentions: 2
Published: over 6 years ago

10.3389/fmed.2017.00159

Proteomics of Eosinophil Activation
Cited by: 6
Author(s): Deane F. Mosher, Emily M. Wilkerson, Keren B. Turton, Alexander S. Hebert, Joshua J. Coon
Software Mentions: 2
Published: over 6 years ago

10.3389/fchem.2019.00873

In silico Methods for Design of Kinase Inhibitors as Anticancer Drugs
Cited by: 64
Author(s): Žarko Gagić, Dušan Ružić, Nemanja Djoković, Teodora Djikić, Katarina Nikolic
Software Mentions: 2
Published: over 4 years ago

10.1016/j.ejpb.2019.02.007

Molecular simulation as a computational pharmaceutics tool to predict drug solubility, solubilization processes and partitioning
Cited by: 63
Author(s): Shakhawath Hossain, Aleksei Kabedev, Albin Parrow, Christel A S Bergström, Per Larsson
Software Mentions: 2
Published: about 5 years ago

10.1186/s13167-015-0041-3

Assessing value of innovative molecular diagnostic tests in the concept of predictive, preventive, and personalized medicine
Cited by: 37
Author(s): Ildar Akhmetov, Rostyslav Bubnov
Software Mentions: 2
Published: over 8 years ago

10.1140/epjc/s10052-014-3191-x

Production of $$\mathbf {\Sigma (1385)^{\pm }}$$ Σ ( 1385 ) ± and $$\mathbf {\Xi (1530)^{0}}$$ Ξ ( 1530 ) 0 in proton–proton collisions at $$\mathbf {\sqrt{s}=}$$ s = 7 TeV
Cited by: 126
Author(s): B. Abelev, J. Adam, D. Adamová, M. M. Aggarwal, G. Aglieri Rinella, M. Agnello, A. Agostinelli, Neelima Agrawal, Z. Ahammed, N. Ahmad, I. Ahmed, S. U. Ahn, S. U. Ahn, I. Aimo, S. Aiola, M. Ajaz, A. Akindinov, Sk Noor Alam, D. Aleksandrov, B. Alessandro, D. Alexandre, A. Alici, A. Alkin, J. Alme, T. Alt, S. Altinpinar, I. Altsybeev, C. Alves Garcia Prado, C. Andrei, A. Andronic, V. Anguelov, J. Anielski, T. Antičić, F. Antinori, P. Antonioli, L. Aphecetche, H. Appelshäuser, S. Arcelli, N. Armesto, R. Arnaldi, T. Aronsson, I. C. Arsene, M. Arslandok, A. Augustinus, R. Averbeck, T. C. Awes, M. D. Azmi, M. Bach, A. Badalà, Y. W. Baek, S. Bagnasco, R. Bailhache, R. Bala, A. Baldisseri, F. Baltasar Dos Santos Pedrosa, R. C. Baral, R. Barbera, F. Barile, G. G. Barnaföldi, L. S. Barnby, V. Barret, J. Bartke, M. Basile, N. Bastid, S. Basu, B. Bathen, G. Batigne, A. Batista Camejo, B. Batyunya, P. C. Batzing, C. Baumann, I. G. Bearden, H. Beck, C. Bedda, N. K. Behera, I. Belikov, F. Bellini, R. Bellwied, E. Belmont‐Moreno, R. Belmont, V. Belyaev, G. Bencédi, S. Beolè, I. Berceanu, A. Bercuci, Y. Berdnikov, D. Berényi, Martin Berger, R. A. Bertens, D. Berzano, L. Betev, A. Bhasin, I. R. Bhat, A. K. Bhati, B. Bhattacharjee, J. Bhom, L. Bianchi, N. Bianchi, C. Bianchin, J. Bielčík, J. Bielčíková, A. Bilandzic, S. Bjelogrlic, F. Blanco, D. Blau, C. Blume, F. Bock, A. Bogdanov, H. Bøggild, M. Bogolyubsky, F. V. Böhmer, L. Boldizsár, M. Bombara, J. Book, H. Borel, A. Borissov, F. Bossù, M. Botje, E. Botta, S. Böttger, P. Braun‐Munzinger, M. Bregant, T. Breitner, T. A. Broker, T. A. Browning, M. Broz, E. Bruna, G. E. Bruno, D. Budnikov, H. Buesching, S. Bufalino, P. Bunčić, O. Busch, Z. Buthelezi, D. Caffarri, X. Cai, H. Caines, L. Calero Diaz, A. Caliva, E. Calvo Villar, P. Camerini, F. Carena, W. Carena, J. Castillo Castellanos, E. A. R. Casula, V. Cătănescu, C. Cavicchioli, C. Ceballos Sànchez, J. Cepila, P. Cerello, B. Chang, S. Chapeland, J. L. Charvet, S. Chattopadhyay, S. Chattopadhyay, V. Chelnokov, M. Cherney, C. Cheshkov, B. Cheynis, V. Chibante Barroso, D. D. Chinellato, P. Chochula, M. Chojnacki, S. Choudhury, Panagiotis Christakoglou, C. H. Christensen, P. Christiansen, T. Chujo, S. U. Chung, C. Cicalò, L. Cifarelli, F. Cindolo, J. Cleymans, F. Colamaria, D. Colella, A. Collu, M. Colocci, G. Conesa Balbastre, Z. Conesa del Valle, M. Connors, J. G. Contreras, Thomas Michael Cormier, Y. Corrales Morales, P. Cortese, I. Cortés Maldonado, M. R. Cosentino, F. Costa, P. Crochet, R. Cruz Albino, E. Cuautle, L. Cunqueiro, A. Dainese, R. Dang, A. Danu, Debottam Das, I. Das, K. Das, S. Das, A. Dash, S. Dash, S. De, H. Delagrange, A. Deloff, E. Dénes, G. DʼErasmo, A. De, G. de Cataldo, J. de Cuveland, A. De Falco, D. De Gruttola, N. De Marco, S. De Pasquale, R. de Rooij, M. A. Diaz Corchero, T. Dietel, P. Dillenseger, R. Divià, D. Di Bari, S. Di Liberto, A. Di Mauro, P. Di Nezza, Ø. Djuvsland, A. Dobrin, T. Dobrowolski, D. Domenicis Gimenez, B. Dönigus, O. Dordic, S. Dørheim, A. K. Dubey, A. Dubla, L. Ducroux, P. Dupieux, A. K. Dutta Majumdar, T. E. Hilden, R. J. Ehlers, D. Elia, H. Engel, B. Erazmus, H. A. Erdal, D. Eschweiler, B. Espagnon, Marco Esposito, M. Estienne, S. Esumi, D. Evans, S. Evdokimov, D. Fabris, J. Faivre, D. Falchieri, A. Fantoni, M. Fasel, D. Fehlker, L. Feldkamp, D. Felea, A. Feliciello, Г. Феофилов, J. Ferencei, A. Fernández Téllez, E. G. Ferreiro, A. Ferretti, A. Festanti, J. Figiel, M. A. S. Figueredo, S. Filchagin, D. Finogeev, F. M. Fionda, E. M. Fiore, E. Floratos, M. Floris, S. Foertsch, P. Foka, S. Fokin, E. Fragiacomo, A. Francescon, U. Frankenfeld, U. Fuchs, C. Furget, A. Furs, M. Fusco Girard, J. J. Gaardhøje, M. Gagliardi, A. M. Gago, M. Gallio, D. R. Gangadharan, P. Ganoti, C. Gao, C. Garabatos, E. García-Solis, C. Gargiulo, I. Garishvili, J. Gerhard, M. Germain, A. Gheaţă, M. Gheata, B. Ghidini, P. Ghosh, S. K. Ghosh, P. Gianotti, P. Giubellino, E. Gładysz-Dziaduś, P. Glässel, A. Gómez Ramírez, P. González-Zamora, S. Gorbunov, L. Görlich, S. Gotovac, L. K. Graczykowski, A. Grelli, A. Grigoras, C. Grigoras, V. Grigoriev, A. Grigoryan, S. Grigoryan, B. Grinyov, N. Grion, J. F. Grosse-Oetringhaus, J. Y. Grossiord, R. Grosso, F. Guber, R. Guernane, B. Guerzoni, M. Guilbaud, K. Gulbrandsen, H. Gulkanyan, M. Gumbo, T. Gunji, A. Gupta, R. Gupta, K. H. Khan, R. Haake, Ø. Haaland, C. Hadjidakis, M. Haiduc, H. Hamagaki, G. Hamar, L. D. Hanratty, A. Hansen, J. W. Harris, H. Hartmann, A. Harton, D. Hatzifotiadou, S. Hayashi, S. T. Heckel, M. Heide, H. Helstrup, A. Herghelegiu, G. Herrera Corral, B. A. Hess, K. F. Hetland, B. Hippolyte, J. Hladkỳ, P. Hristov, M. Huang, T. J. Humanic, N. Hussain, T. Hussain, D. Hutter, Dae Sung Hwang, R. Ilkaev, I. Ilkiv, M. Inaba, G. M. Innocenti, C. Ionita, M. Ippolitov, M. Irfan, M. Ivanov, V. Ivanov, A. Jachołkowski, P. Jacobs, C. Jahnke, H. J. Jang, M. A. Janik, P. H. S. Y. Jayarathna, C. Jena, S. Jena, R. T. Jimenez Bustamante, P. G. Jones, H. Jung, A. Jusko, V. Kadyshevskiy, P. Kaliňák, A. Kalweit, J. Kamin, J. H. Kang, V. Kaplin, S. Kar, A. Karasu Uysal, O. Karavichev, T. Karavicheva, E. Karpechev, U. Kebschull, R. Keidel, D. L. D. Keijdener, M. Keil SVN, M. Mohisin Khan, P. Khan, S. A. Khan, A. Khanzadeev, Y. Kharlov, B. Kileng, B. Kim, D. W. Kim, D. J. Kim, J. S. Kim, M. Kim, M. Kim, S. Kim, T. Kim, S. Kirsch, I. Kisel, S. Kiselev, A. Kisiel, G. Kiss, J. L. Klay, J. Klein, C. Klein-Bösing, Alexander Kluge, M. L. Knichel, A. G. Knospe, C. Kobdaj, M. Kofarago, M. K. Köhler, T. Kollegger, A. Kolojvari, V. Kondratiev, N. Kondratyeva, A. Konevskikh, V. Kovalenko, M. Kowalski, S. Kox, G. Koyithatta Meethaleveedu, J. Král, I. Králik, A. Kravčáková, M. Krelina, M. Kretz, M. Krivda, F. Křížek, E. Kryshen, M. Krzewicki, V. Kučera, Y. Kucheriaev, T. Kugathasan, C. Kuhn, P. G. Kuijer, I. Kulakov, J. Kumar, P. Kurashvili, A. Kurepin, A. Kurepin, A. Kuryakin, S. Kushpil, M. J. Kweon, Y. Kwon, P. Ladrón de Guevara, C. Lagana Fernandes, I. Lakomov, R. Langoy, C. Lara, A. Lardeux, A. Lattuca, Sarah Louise La Pointe, P. La Rocca, R. Lea, L. Leardini, G. R. Lee, I. Legrand, J. Lehnert, R. C. Lemmon, V. Lenti, E. Leogrande, M. Leoncino, I. Léon Monźon, P. Lévai, S. Li, J. Lien, R. Lietava, S. Lindal, V. Lindenstruth, C. Lippmann, M. A. Lisa, H. M. Ljunggren, D. F. Lodato, P. I. Loenne, V. R. Loggins, V. Loginov, D. Lohner, C. Loizides, X. Lopez, E. López Torres, X.-G. Lu, P. Luettig, M. Lunardon, G. Luparello, R. Ma, A. Maevskaya, M. Mager, D. P. Mahapatra, S. M. Mahmood, A. Maire, R. Majka, M. Malaev, I. Maldonado Cervantes, L. Malinina, D. Mal’Kevich, P. Malzacher, A. Mamonov, L. Manceau, V. Manko, F. Manso, V. Manzari, M. Marchisone, J. Mareš, G. V. Margagliotti, A. Margotti, A. Marı́n, C. Markert, M. Marquard, I. Martashvili, N. A. Martin, P. Martinengo, M. Martı́nez, G. Martınez García, J. Martin Blanco, Y. Martynov, A. Mas, S. Masciocchi, M. Masera, A. Masoni, L. Massacrier, A. Mastroserio, A. Matyja, Christoph Mayer, J. Mazer, M. A. Mazzoni, F. Meddi, A. Menchaca‐Rocha, E. Meninno, J. Mercado Pérez, M. Meres, Y. Miake, K. Mikhaylov, L. Milano, J. Milošević, A. Mischke, Aditya Nath Mishra, D. Miśkowiec, J. Mitra, C. M. Mitu, J. Mlynarz, N. Mohammadi, B. Mohanty, L. Molnár, L. Montaño Zetina, E. Montes, M. Morando, D. A. Moreira De Godoy, S. Moretto, A. Morreale, A. Morsch, V. Muccifora, E. Mudnić, D. Mühlheim, S. Muhuri, M. Mukherjee, H. Müller, M. G. Munhoz, S. Murray, L. Musa, J. Mušinský, B. K. Nandi, R. Nania, E. Nappi, C. Nattrass, K. Nayak, T. K. Nayak, S. Nazarenko, A. Nedosekin, M. Nicassio, M. Niculescu, J. Niedziela, B. S. Nielsen, S. Nikolaev, S. Nikulin, V. Nikulin, B. S. Nilsen, F. Noferini, P. Nomokonov, G. Nooren, J. Norman, A. Nyanin, J. Nystrand, H. Oeschler, S. Oh, S. Oh, A. Okatan, T. Okubo, L. Oláh, J. Oleniacz, A. C. Oliveira Da Silva, J. Onderwaater, C. Oppedisano, A. Ortiz Velasquez, A. Öskarsson, J. Otwinowski, K. Oyama, K. Ozdemir, P. Sahoo, Y. Pachmayer, M. Pachr, P. Pagano, G. Paić, C. Pajares, S. K. Pal, A. Palmeri, D. Pant, V. Papikyan, G. S. Pappalardo, P. Pareek, W. J. Park, S. Parmar, A. Passfeld, Д. И. Паталаха, V. Paticchio, B. Paul, T. Pawlak, T. Peitzmann, H. Pereira Da Costa, E. Pereira De Oliveira Filho, D. Peresunko, C. Lara, A. Pesci, V. Peskov, Y. Pestov, V. Petráček, M. Petráň, M. Petriş, M. Petrovici, C. Petta, S. Piano, M. Pikna, P. Pillot, O. Pinazza, L. Pinsky, Danthasinghe Piyarathna, M. Płoskoń, M. Planinić, J. Pluta, S. Pochybová, P. L.M. Podesta-Lerma, M. G. Poghosyan, E. H. O. Pohjoisaho, B. Polichtchouk, N. Poljak, A. Pop, S. Porteboeuf-Houssais, J. Porter, B. Potukuchi, Sidharth Kumar Prasad, R. Preghenella, F. Prino, C. Pruneau, I. Pshenichnov, M. Puccio, G. Puddu, P. R. Pujahari, V. Punin, J. Putschke, H. Qvigstad, A. Rachevski, S. Raha, S. Rajput, J. Rak, A. Rakotozafindrabe, L. Ramello, R. Raniwala, S. Raniwala, Sami Sakari Rasanen, B. T. Rascanu, D. Rathee, A. W. Rauf, V. Razazi, K. F. Read, J. S. Réal, K. Redlich, R. Reed, A. Rehman, P. Reichelt, M. Reicher, F. Reidt, R. Renfordt, A. R. Reolon, A. Reshetin, F. Rettig, J. P. Revol, K. Reygers, V. Riabov, R. A. Ricci, T. Richert, Matthias Richter, P. Riedler, W. Riegler, F. Riggi, A. Rivetti, E. Rocco, M. Rodríguez Cahuantzi, A. Rodriguez Manso, K. Røed, E. Rogochaya, S. Rohni, D. Røhr, D. Röhrich, R. Romita, F. Ronchetti, L. Ronflette, P. Rosnet, A. Rossi, F. Roukoutakis, A. Roy, C. Roy, P. Roy, A. J. Rubio Montero, R. Rui, R. Russo, E. Ryabinkin, Y. F. Ryabov, A. Rybicki, S. Sadovsky, K. Šafařı́k, B. Sahlmuller, R. Sahoo, P. K. Sahu, J. Saini, S. Sakai, Carlos A. Salgado, J. Salzwedel, S. Sambyal, V. Samsonov, X. Sanchez Castro, F. Rodrı́guez, L. Šándor, A. Sandoval, M. Sano, G. Santagati, D. Sarkar, E. Scapparone, F. Scarlassara, R. P. Scharenberg, C. Schiaua, R. Schicker, C. Schmidt, H. R. Schmidt, S. Schuchmann, J. Schukraft, Martin Schulc, T. Schuster, Y. Schütz, K. Schwarz, K. Schweda, G. Scioli, E. Scomparin, R. Scott, G. Segato, J. Seger, Y. Sekiguchi, I. Selyuzhenkov, K. Senosi, Jin Joo Seo, E. Serradilla, A. Sevcenco, A. Shabetai, G. Shabratova, R. Shahoyan, A. Shangaraev, A. Sharma, N. Sharma, S. Sharma, K. Shigaki, K. Shtejer, Y. Sibiriak, S. Siddhanta, T. Siemiarczuk, D. Silvermyr, C. Silvestre, G. Simatovic, R. Singaraju, R. Singh, S. Singha, V. Singhal, Bikash Sinha, T. Sinha, B. Sitár, M. Sitta, T. B. Skaali, K. Skjerdal, M. Słupecki, N. Smirnov, Raimond Snellings, C. Søgaard, R. A. Soltz, J. Song, M. Song, F. Soramel, S. P. Sørensen, M. Špaček, E. Spiriti, I. Sputowska, M. Spyropoulou‐Stassinaki, B. Srivastava, J. Stachel, I. Stan, G. Stefanek, M. Steinpreis, E. Stenlund, G. Steyn, J. H. Stiller, D. Stocco, M. Stolpovskiy, P. Strmeň, Alexandre Alarcon Do Passo Suaide, T. Sugitate, C. Suire, M. Suleymanov, R. Sultanov, M. Šumbera, T. J. M. Symons, A. Szabó, A. Szanto de Toledo, I. Szarka, A. Szczepankiewicz, M. Szymański, J. Takahashi, M. A. Tangaro, J. D. Tapia Takaki, A. Tarantola Peloni, A. Tarazona Martinez, Mohammad Tariq, M. G. Târzilă, A. Tauro, G. Tejeda Muñoz, A. Telesca, K. Terasaki, C. Terrevoli, J. Thäder, D. Thomas, R. Tieulent, A. R. Timmins, A. Toia, V. Trubnikov, W. H. Trzaska, T. Tsuji, A. Tumkin, R. Turrisi, T. S. Tveter, K. Ullaland, A. Uras, G. L. Usai, M. Vajzer, M. Vala, L. Valencia Palomo, S. Vallero, P. Vande Vyvre, J. Van Der Maarel, J. W. Van Hoorne, M. van Leeuwen, A. Vargas, M. Vargyas, R. Varma, M. Vasileiou, A. Vasiliev, V. Vechernin, M. Veldhoen, A. Velure, M. Venaruzzo, E. Vercellin, S. Vergara Limón, R. Vernet, M. Verweij, L. Vickovic, G. Viesti, J. Viinikainen, Z. Vilakazi, O. Villalobos Baillie, А. Виноградов, L. Vinogradov, Y. Vinogradov, T. Virgili, V. Vislavicius, Y. P. Viyogi, A. Vodopyanov, Martin Andreas Volkl, K. Voloshin, S. A. Voloshin, G. Volpe, B. von Haller, I. Vorobyev, D. Vranić, J. Vrláková, B. Vulpescu, A. Vyushin, B. Wagner, Jan Wagner, V. Wagner, M. Wang, Y. Wang, Daisuke Watanabe, M. Weber, M. Weber, J. P. Wessels, U. Westerhoff, J. Wiechuła, J. Wikne, M. Wilde, G. Wilk, J. Wilkinson, M. C. S. Williams, B. Windelband, Michael Andreas Winn, C. G. Yaldo, Y. Yamaguchi, H. Yang, P. Yang, S. Yang, S. Yano, S. Yasnopolskiy, J. Yi, Z. Yin, I. K. Yoo, I. E. Yushmanov, V. Zaccolo, C. Zach, A. Zaman, C. Zampolli, S. Zaporozhets, A. Zarochentsev, P. Závada, N. Zaviyalov, H. Zbroszczyk, I. S. Zgura, M. Zhalov, H. Zhang, X. Zhang, Y. Zhang, C. Zhao, N. Zhigareva, D. Zhou, F. Zhou, Y. Zhou, Z. Zhou, H. Zhu, J. Zhu, X. Zhu, A. Zichichi, A. Zimmermann, M. B. Zimmermann, G. Zinovjev, Y. Zoccarato, M. Zyzak
Software Mentions: 2
Published: over 9 years ago

10.3389/fimmu.2021.712480

Mycobacterium tuberculosis-Specific T Cell Functional, Memory, and Activation Profiles in QuantiFERON-Reverters Are Consistent With Controlled Infection
Cited by: 6
Author(s): Cheleka A M Mpande, Pia Steigler, Tessa Lloyd, Virginie Rozot, Boitumelo Mosito, Constance Schreuder, Timothy D. Reid, Nicole Bilek, Morten Rühwald, Jason R Andrews, Mark Hatherill, Francesca Little, Thomas J. Scriba, Elisa Nemes
Software Mentions: 2
Published: over 2 years ago

10.3390/cells9092049

A Role for Caenorhabditis elegans COMPASS in Germline Chromatin Organization
Cited by: 6
Author(s): Marion Herbette, Valérie Robert, Aymeric Bailly, Loïc Gely, Robert Feil, David Llères, Francesca Palladino
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0103099

In Silico Modeling of Human α2C-Adrenoreceptor Interaction with Filamin-2
Cited by: 11
Author(s): Marcin Pawłowski, Saras Saraswathi, Hanaa K. B. Motawea, Maqsood A. Chotani, Andrzej Kloczkowski
Software Mentions: 2
Published: almost 10 years ago

10.7759/cureus.8380

Aspiration Thrombectomy Versus Stent Retriever Thrombectomy Alone for Acute Ischemic Stroke: A Systematic Review and Meta-Analysis
Cited by: 3
Author(s): Mubashir Zafar, Muhammad Mussa, Roha Saeed Memon, Shahrukh Nadeem, Muhammad Usman, Javed Siddiqi, Alexander Norbash, Faisal Khosa, Vincent M. Figueredo, Richard A. Krasuski, Muhammad Shahzeb Khan
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0017215

Incorporation of Local Structural Preference Potential Improves Fold Recognition
Cited by: 15
Author(s): Yun Hu, Xiaoxi Dong, Aiping Wu, Yang Cao, Liqing Tian, Taijiao Jiang
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0015199

Tracing the Origin of the Fungal α1 Domain Places Its Ancestor in the HMG-Box Superfamily: Implication for Fungal Mating-Type Evolution
Cited by: 92
Author(s): Tom Martin, Shunwen Lu, Herman van Tilbeurgh, Daniel R. Ripoll, Christina Dixelius, B. Gillian Turgeon, Robert Debuchy
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2105-13-332

CYPSI: a structure-based interface for cytochrome P450s and ligands in Arabidopsis thaliana
Cited by: 4
Author(s): Gaihua Zhang, Yijing Zhang, Zhen Su
Software Mentions: 2
Published: over 11 years ago

10.1242/dev.190637

Regulators of H3K4 methylation mutated in neurodevelopmental disorders control axon guidance in <i>C. elegans</i>
Cited by: 8
Author(s): Steffen Nørgaard, Benedetta Attianese, Laura Boreggio, Anna Elisabetta Salcini
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2164-9-455

Unassigned MURF1 of kinetoplastids codes for NADH dehydrogenase subunit 2
Cited by: 12
Author(s): Sivakumar Kannan, Gertraud Burger
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pone.0061179

Prediction of Selected Physical and Mechanical Properties of a Telechelic Polybenzoxazine by Molecular Simulation
Cited by: 7
Author(s): Wan Aminah Wan Hassan, Ian Hamerton, Brendan J. Howlin
Software Mentions: 2
Published: about 11 years ago

10.1155/2014/720960

A Least Square Method Based Model for Identifying Protein Complexes in Protein-Protein Interaction Network
Cited by: 4
Author(s): Qigen Dai, Maozu Guo, Yingjie Guo, Xiaoyan Liu, Yang Liu, Zhaogang Teng
Software Mentions: 2
Published: over 10 years ago

10.1186/1745-6150-6-37

CREST - a large and diverse superfamily of putative transmembrane hydrolases
Cited by: 73
Author(s): Jimin Pei, Douglas P. Millay, Eric N. Olson, Nick V. Grishin
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pgen.1007812

Stress-responsive and metabolic gene regulation are altered in low S-adenosylmethionine
Cited by: 19
Author(s): Wei Ding, Daniel P. Higgins, Dilip Kumar Yadav, Adwait Anand Godbole, Read Pukkila-Worley, Alec J. Walker
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1005074

Genetic Interaction Mapping Reveals a Role for the SWI/SNF Nucleosome Remodeler in Spliceosome Activation in Fission Yeast
Cited by: 24
Author(s): Kristin L. Patrick, Colm J. Ryan, Jiewei Xu, Jesse J. Lipp, Kelly E. Nissen, Assen Roguev, Michael Shales, Nevan J. Krogan, Christine Guthrie
Software Mentions: 2
Published: about 9 years ago

10.1155/2021/8561350

Efficacy and Safety of Rivaroxaban Compared with Other Therapies Used in Patients with Peripheral Artery Disease Undergoing Peripheral Revascularization: A Systematic Literature Review and Network Meta-Analysis
Cited by: 2
Author(s): Rupert Bauersachs, Olívia Wu, Neil Hawkins, Kevin Bowrin, Piotr Wojciechowski, E. Clay, Maria Huelsebeck
Software Mentions: 2
Published: over 2 years ago

10.1186/s13098-019-0473-3

22nd Brazilian Diabetes Society Congress
Cited by: 5
Author(s):
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.0030199

A Primer on Python for Life Science Researchers
Cited by: 60
Author(s): Sebastián Bassi
Software Mentions: 2
Published: over 16 years ago

10.1016/j.bbapap.2013.02.042

Functional site plasticity in domain superfamilies
Cited by: 29
Author(s): Benoît H. Dessailly, Natalie L. Dawson, Kenji Mizuguchi, Christine A. Orengo
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pcbi.1004022

Fast and Accurate Resonance Assignment of Small-to-Large Proteins by Combining Automated and Manual Approaches
Cited by: 6
Author(s): Markus Niklasson, Alexandra Ahlner, Cecilia Andrésen, Joseph A. Marsh, Patrik Lundström
Software Mentions: 2
Published: over 9 years ago

10.1002/prp2.651

Do proton pump inhibitors increase mortality? A systematic review and in‐depth analysis of the evidence
Cited by: 11
Author(s): Mohamed Ben‐Eltriki, Carolyn J. Green, Malcolm Maclure, Vijaya M Musini, Ken Bassett, James M Wright
Software Mentions: 2
Published: over 3 years ago

10.1111/acps.12530

Pilot randomised trial of a brief intervention for comorbid substance misuse in psychiatric in‐patient settings
Cited by: 20
Author(s): Hermine L. Graham, Alex Copello, Emma Griffith, Nick Freemantle, Paul McCrone, Latoya Clarke, Kathryn Walsh, Chrysi Stefanidou, Arsal Rana, Max Birchwood
Software Mentions: 2
Published: over 8 years ago

10.3390/pharmaceutics11120620

Mesoscale Simulations of pH-Responsive Amphiphilic Polymeric Micelles for Oral Drug Delivery
Cited by: 10
Author(s): Zhi Min Wu, Manzhen Duan, Di Xiong, Can Yang Zhang
Software Mentions: 2
Published: over 4 years ago

10.1371/currents.eogt.0f04f6081905998fa92b99593478aeab

Use of the Corus® CAD Gene Expression Test for Assessment of Obstructive Coronary Artery Disease Likelihood in Symptomatic Non-Diabetic Patients
Cited by: 16
Author(s): Jose D. Vargas, João A.C. Lima, William E. Kraus, Pamela S. Douglas, Steven Rosenberg
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2105-14-S3-S5

Protein function prediction using domain families
Cited by: 45
Author(s): Robert Rentzsch, Christine A. Orengo
Software Mentions: 2
Published: over 11 years ago

10.1186/s12957-019-1673-x

P.R.O.P.S. — A novel Pre-Operative Predictive Score for unresectability in patients with colorectal peritoneal metastases being considered for cytoreductive surgery (CRS) and hyperthermic intraperitoneal chemotherapy (HIPEC)
Cited by: 1
Author(s): Zachary Zihui Yong, Grace Hwei Ching Tan, Nicholas B. Shannon, Claramae Shulyn Chia, Melissa Ching Ching Teo
Software Mentions: 2
Published: almost 5 years ago

Projects: bioconductor: COMPASS

Papers Mentioning COMPASS 614