Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.12688/f1000research.11622.3
https://doi.org/10.12688/f1000research.11622.3
CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets
Cited by: 205
Author(s): Małgorzata Nowicka, Carsten Krieg, Helena L. Crowell, Lukas M. Weber, Felix J. Hartmann, Silvia Guglietta, Burkhard Becher, Mitchell P. Levesque, Mark D. Robinson
Published: over 5 years ago
Software Mentions 15
bioconductor: COMPASS
Combinatorial Polyfunctionality Analysis of Single CellsPapers that mentioned: 614
bioconductor: cydar
Using Mass Cytometry for Differential Abundance AnalysesPapers that mentioned: 6
bioconductor: diffcyt
Differential discovery in high-dimensional cytometry via high-resolution clusteringPapers that mentioned: 18
bioconductor: flowCore
flowCore: Basic structures for flow cytometry dataPapers that mentioned: 109
bioconductor: FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry dataPapers that mentioned: 177
bioconductor: flowWorkspace
Infrastructure for representing and interacting with gated and ungated cytometry data sets.Papers that mentioned: 15
bioconductor: openCyto
Hierarchical Gating Pipeline for flow cytometry dataPapers that mentioned: 11
bioconductor: SIMLR
Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)Papers that mentioned: 40
cran: cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.Papers that mentioned: 416
pypi: PhenoGraph
Graph-based clustering for high-dimensional single-cell dataPapers that mentioned: 96
pypi: SIMLR
Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learningPapers that mentioned: 40