Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: openCyto
https://packages.ecosyste.ms/registries/bioconductor.org/packages/openCyto
Hierarchical Gating Pipeline for flow cytometry data
1 version
Latest release: about 1 year ago
8 dependent packages
132,627 downloads total
Papers Mentioning openCyto 11
10.12688/f1000research.11622.3
CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasetsCited by: 205
Author(s): Małgorzata Nowicka, Carsten Krieg, Helena L. Crowell, Lukas M. Weber, Felix J. Hartmann, Silvia Guglietta, Burkhard Becher, Mitchell P. Levesque, Mark D. Robinson
Software Mentions: 15
Published: over 5 years ago
10.3390/cancers13081788
Analysis of Intra-Tumoral Macrophages and T Cells in Non-Small Cell Lung Cancer (NSCLC) Indicates a Role for Immune Checkpoint and CD200-CD200R InteractionsCited by: 7
Author(s): Anders Tøndell, Yashwanth Subbannayya, Sissel Gyrid Freim Wahl, Arnar Flatberg, Sveinung Sørhaug, Magne Børset, Markus Haug
Software Mentions: 12
Published: over 3 years ago
10.1371/journal.pcbi.1003806
OpenCyto: An Open Source Infrastructure for Scalable, Robust, Reproducible, and Automated, End-to-End Flow Cytometry Data AnalysisCited by: 171
Author(s): Greg Finak, Jacob Frelinger, Wenxin Jiang, Evan W. Newell, John Ramey, Mark M. Davis, Spyros A. Kalams, Stephen C. De Rosa, Raphaël Gottardo
Software Mentions: 8
Published: about 10 years ago
10.3389/fcell.2020.00234
Recent Advances in Computer-Assisted Algorithms for Cell Subtype Identification of Cytometry DataCited by: 17
Author(s): Peng Liu, Silvia Liu, Yusi Fang, Xiangning Xue, Jian Zou, George C. Tseng, Liza Konnikova
Software Mentions: 6
Published: over 4 years ago
10.1038/s41598-020-64516-0
Cyto-Feature Engineering: A Pipeline for Flow Cytometry Analysis to Uncover Immune Populations and Associations with DiseaseCited by: 7
Author(s): Amy Fox, Taru Dutt, Burton Karger, Mauricio Rojas, Andrés Obregón-Henao, G. Brooke Anderson, Marcela Henao-Tamayo
Software Mentions: 6
Published: over 4 years ago
10.1002/cyto.a.23663
<i>CytoML</i> for cross‐platform cytometry data sharingCited by: 23
Author(s): Greg Finak, Wenxin Jiang, Raphaël Gottardo
Software Mentions: 5
Published: almost 6 years ago
10.1038/s41598-020-77433-z
High CD45 expression of CD8+ and CD4+ T cells correlates with the size of HIV-1 reservoir in bloodCited by: 7
Author(s): Stefan Petkov, Yonas Bekele, Tadepally Lakshmikanth, Bo Hejdeman, Maurizio Zazzi, Petter Brodin, Francesca Chiodi
Software Mentions: 4
Published: almost 4 years ago
10.3389/fimmu.2019.02403
Adaptive Features of Natural Killer Cells in Multiple SclerosisCited by: 15
Author(s): Antía Moreira, Elisenda Alari-Pahissa, Elvira Munteis, Antonio Vera, Ana Zabalza, Mireia Llop, Noelia Villarrubia, Marcel Costa‐García, Roberto Álvarez‐Lafuente, Luisa María Villar, Miguel López‐Botet, José Enrique Martínez-Rodríguez
Software Mentions: 4
Published: about 5 years ago
10.1186/s12859-021-04067-x
CytoGLMM: conditional differential analysis for flow and mass cytometry experimentsCited by: 13
Author(s): Christof Seiler, Anne-Maud Ferreira, Lisa M. Kronstad, Laura J. Simpson, Mathieu Le Gars, Elena Vendrame, Catherine A. Blish, Susan Holmes
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-020-75417-7
Genetic parameters and associated genomic regions for global immunocompetence and other health-related traits in pigsCited by: 19
Author(s): María Ballester, Yuliaxis Ramayo-Caldas, Olga González‐Rodríguez, M. Pascual, Josep Peñuelas i Reixach, Marta Díaz, Fany Blanc, Sergi López-Serrano, J. Tibau, Raquel Quintanilla
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0197902
DNA immunization site determines the level of gene expression and the magnitude, but not the type of the induced immune responseCited by: 16
Author(s): Stefan Petkov, Elizaveta Starodubova, Anastasia Latanova, Athina Kilpeläinen, Oleg Latyshev, Šimons Svirskis, Britta Wahrén, Francesca Chiodi, Ilya Gordeychuk, Maria Isaguliants
Software Mentions: 3
Published: over 6 years ago