Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
pypi projects 9,932
pypi: ISA
ISA (Independent Statistics Aggregator) collects node statistics for a cluster of nodes.Papers that mentioned: 137
pypi: coot
Papers that mentioned: 136pypi: voom
A python message bus that you can put 4 million volts through.Papers that mentioned: 136
pypi: PyNN
A Python package for simulator-independent specification of neuronal network modelsPapers that mentioned: 131
pypi: QDA
A tool for quantitatively measuring the discursive similarity between bodies of text.Papers that mentioned: 128
pypi: graphics
A console based graphics engine for simple Unicode games and animations.Papers that mentioned: 126
pypi: mapper
Python Mapper: an open source tool for exploration, analysis and visualization of data.Papers that mentioned: 122
pypi: pyani
pyani provides a package and script for calculation of genome-scale average nucleotide identity.Papers that mentioned: 120
pypi: DendroPy
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.Papers that mentioned: 119
pypi: PyClone
Wraps rclone and provides an interface for an installation at the host or container level.Papers that mentioned: 119
pypi: Cython
The Cython compiler for writing C extensions in the Python language.Papers that mentioned: 118
pypi: microbiome
Papers that mentioned: 114pypi: biopython
Freely available tools for computational molecular biology.Papers that mentioned: 114
pypi: bnlearn
Python package for learning the graphical structure of Bayesian networks, parameter learning, inference and sampling methods.Papers that mentioned: 113
pypi: networkx
Python package for creating and manipulating graphs and networksPapers that mentioned: 110
pypi: Watson
The Chatbot that won America's hearts in the 80's is back! And this time, he means business!Papers that mentioned: 108
pypi: i
Never use print() to debug again; inspect variables, expressions, and program execution with a single, simple function call.Papers that mentioned: 103
pypi: SVR
Used to retrieve the latest version of a software and will return it as a stringPapers that mentioned: 102
pypi: pythia
An extensible, object-oriented framework for specifying and staging complex, multi-physics simulations.Papers that mentioned: 102
pypi: AltAnalyze
User Friendly Application for Comprehensive Transcriptome AnalysisPapers that mentioned: 102
pypi: CAGE
A generic and fairly complete cellular automata simulation engine.Papers that mentioned: 101
pypi: Circuitscape
Circuitscape borrows algorithms from electronic circuit theory to predict patterns of movement, gene flow, and genetic differentiation among plant and animal populations in heterogeneous landscapes.Papers that mentioned: 100
pypi: CIRCexplorer
A combined strategy to identify circular RNAs (circRNAs and ciRNAs)Papers that mentioned: 99
pypi: PhenoGraph
Graph-based clustering for high-dimensional single-cell dataPapers that mentioned: 96
pypi: EAST
Text analysis library based on the Annotated Suffix Tree methodPapers that mentioned: 95
pypi: EMIRGE
EMIRGE reconstructs full length sequences from short sequencing readsPapers that mentioned: 94
pypi: NanoPlot
Plotting suite for Oxford Nanopore sequencing data and alignmentsPapers that mentioned: 90
pypi: Size
This module manages sizes as they are reported by various UNIX commands.Papers that mentioned: 89