pypi projects 9,932
Very Likely Science (65)
pypi: ISA
ISA (Independent Statistics Aggregator) collects node statistics for a cluster of nodes.Papers that mentioned: 137
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pypi: voom
A python message bus that you can put 4 million volts through.Papers that mentioned: 136
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pypi: coot
Papers that mentioned: 136
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pypi: PyNN
A Python package for simulator-independent specification of neuronal network modelsPapers that mentioned: 131
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pypi: QDA
A tool for quantitatively measuring the discursive similarity between bodies of text.Papers that mentioned: 128
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pypi: RMS
Papers that mentioned: 126
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pypi: graphics
A console based graphics engine for simple Unicode games and animations.Papers that mentioned: 126
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pypi: mapper
Python Mapper: an open source tool for exploration, analysis and visualization of data.Papers that mentioned: 122
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pypi: pyani
pyani provides a package and script for calculation of genome-scale average nucleotide identity.Papers that mentioned: 120
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pypi: PyClone
Wraps rclone and provides an interface for an installation at the host or container level.Papers that mentioned: 119
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pypi: DendroPy
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.Papers that mentioned: 119
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pypi: Cython
The Cython compiler for writing C extensions in the Python language.Papers that mentioned: 118
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pypi: biopython
Freely available tools for computational molecular biology.Papers that mentioned: 114
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pypi: microbiome
Papers that mentioned: 114
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pypi: bnlearn
Python package for learning the graphical structure of Bayesian networks, parameter learning, inference and sampling methods.Papers that mentioned: 113
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pypi: networkx
Python package for creating and manipulating graphs and networksPapers that mentioned: 110
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pypi: Watson
The Chatbot that won America's hearts in the 80's is back! And this time, he means business!Papers that mentioned: 108
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pypi: i
Never use print() to debug again; inspect variables, expressions, and program execution with a single, simple function call.Papers that mentioned: 103
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pypi: pythia
An extensible, object-oriented framework for specifying and staging complex, multi-physics simulations.Papers that mentioned: 102
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pypi: SVR
Used to retrieve the latest version of a software and will return it as a stringPapers that mentioned: 102
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pypi: AltAnalyze
User Friendly Application for Comprehensive Transcriptome AnalysisPapers that mentioned: 102
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pypi: CAGE
A generic and fairly complete cellular automata simulation engine.Papers that mentioned: 101
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pypi: Circuitscape
Circuitscape borrows algorithms from electronic circuit theory to predict patterns of movement, gene flow, and genetic differentiation among plant and animal populations in heterogeneous landscapes.Papers that mentioned: 100
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pypi: CIRCexplorer
A combined strategy to identify circular RNAs (circRNAs and ciRNAs)Papers that mentioned: 99
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pypi: PhenoGraph
Graph-based clustering for high-dimensional single-cell dataPapers that mentioned: 96
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pypi: EAST
Text analysis library based on the Annotated Suffix Tree methodPapers that mentioned: 95
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pypi: EMIRGE
EMIRGE reconstructs full length sequences from short sequencing readsPapers that mentioned: 94
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pypi: NanoPlot
Plotting suite for Oxford Nanopore sequencing data and alignmentsPapers that mentioned: 90
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pypi: Size
This module manages sizes as they are reported by various UNIX commands.Papers that mentioned: 89
Very Likely Science (65)
Very Likely Science (65)