pypi: figshare | Projects | Ecosyste.ms: Papers

10.12688/gatesopenres.12832.2

DataPackageR: Reproducible data preprocessing, standardization and sharing using R/Bioconductor for collaborative data analysis
Cited by: 7
Author(s): Greg Finak, Bryan T. Mayer, William J. Fulp, Paul Obrecht, Alicia Sato, Eva Yin-han Chung, Drienna Holman, Raphaël Gottardo
Software Mentions: 19
Published: over 6 years ago

10.1007/s11306-018-1356-6

A Python library for FAIRer access and deposition to the Metabolomics Workbench Data Repository
Cited by: 8
Author(s): Andrey Smelter, Hunter N. B. Moseley
Software Mentions: 9
Published: over 6 years ago

10.3390/cancers12123799

A Topic Modeling Analysis of TCGA Breast and Lung Cancer Transcriptomic Data
Cited by: 11
Author(s): Filippo Valle, Matteo Osella, Michele Caselle
Software Mentions: 8
Published: almost 4 years ago

10.1038/sdata.2016.90

Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice
Cited by: 5
Author(s): Tonatiuh Peña Centeno, Orr Shomroni, Magali Hennion, Rashi Halder, Ramón Vidal, Raza-Ur Rahman, Stefan Bonn
Software Mentions: 7
Published: about 8 years ago

10.1038/s41597-020-00760-3

Data-science ready, multisite, human diffusion MRI white-matter-tract statistics
Cited by: 9
Author(s): Garikoitz Lerma-Usabiaga, Pratik Mukherjee, Mike Perry, Brian A. Wandell
Software Mentions: 7
Published: almost 4 years ago

10.1093/gigascience/giab058

Scalable analysis of multi-modal biomedical data
Cited by: 3
Author(s): Jaclyn Smith, Yao Shi, Michael Benedikt, Miloš Nikolić
Software Mentions: 6
Published: about 3 years ago

10.1186/s13321-020-0408-x

Towards reproducible computational drug discovery
Cited by: 83
Author(s): Nalini Schaduangrat, Samuel Lampa, Saw Simeon, M. Paul Gleeson, Ola Spjuth, Chanin Nantasenamat
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41597-021-00936-5

Database of ab initio L-edge X-ray absorption near edge structure
Cited by: 14
Author(s): Yiming Chen, Chi Chen, Zheng Chen, Shyam Dwaraknath, Matthew K. Horton, Jordi Cabana, J. J. Rehr, John Vinson, Alan Dozier, J. J. Kas, Kristin A. Persson, Shyue Ping Ong
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0244724

Geography as non-genetic modulation factor of chicken cecal microbiota
Cited by: 8
Author(s): Natalia Daniela Pin Viso, Enzo A. Redondo, Juan María Díaz Carrasco, Leandro M. Redondo, Javier García, Mariano E. Fernández‐Miyakawa, Marisa Diana Farber
Software Mentions: 5
Published: almost 4 years ago

10.1101/2020.04.24.059527

Consensus transcriptional regulatory networks of coronavirus-infected human cells
Cited by: 1
Author(s): Scott A. Ochsner, Rudolf T. Pillich, Neil J. McKenna
Software Mentions: 5
Published: over 4 years ago

10.7717/peerj.447

Mobile phones carry the personal microbiome of their owners
Cited by: 127
Author(s): James F. Meadow, Adam E. Altrichter, Jessica L. Green
Software Mentions: 5
Published: over 10 years ago

10.1093/gigascience/giy005

GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees pipeline
Cited by: 9
Author(s): Anil Thanki, Nicola Soranzo, Wilfried Haerty, Robert P. Davey
Software Mentions: 4
Published: almost 7 years ago

10.7717/peerj-cs.144

The Modern Research Data Portal: a design pattern for networked, data-intensive science
Cited by: 24
Author(s): Kyle Chard, Eli Dart, Ian Foster, David J. Shifflett, Steven Tuecke, Jason Williams
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41597-019-0070-1

Inter-urban mobility via cellular position tracking in the southeast Songliao Basin, Northeast China
Cited by: 8
Author(s): Zhanwei Du, Yintang Yang, Zeynep Ertem, Chao Gao, Liping Huang, Qiuyang Huang, Yuan Bai
Software Mentions: 4
Published: over 5 years ago

10.1038/s41597-020-00792-9

A gridded establishment dataset as a proxy for economic activity in China
Cited by: 14
Author(s): Lei Dong, Xiaohui Yuan, Meng Li, Carlo Ratti, Yu Liu
Software Mentions: 4
Published: almost 4 years ago

10.1038/sdata.2017.127

Machine-learned and codified synthesis parameters of oxide materials
Cited by: 118
Author(s): Edward Kim, Kevin Huang, Alex Tomala, Sara Matthews, Emma Strubell, Adam Saunders, Andrew McCallum, Elsa Olivetti
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0168397

Metavisitor, a Suite of Galaxy Tools for Simple and Rapid Detection and Discovery of Viruses in Deep Sequence Data
Cited by: 8
Author(s): Guillaume Carissimo, Marius van den Beek, Kenneth D. Vernick, Christophe Antoniewski
Software Mentions: 4
Published: almost 8 years ago

10.12688/f1000research.11334.1

Reproducibility2020: Progress and priorities
Cited by: 79
Author(s): Leonard P. Freedman, Gautham Venugopalan, Rosann Wisman
Software Mentions: 3
Published: over 7 years ago

10.5195/jmla.2021.962

PRISMA-S: an extension to the PRISMA statement for reporting literature searches in systematic reviews
Cited by: 84
Author(s): Melissa L. Rethlefsen, Shona Kirtley, Siw Waffenschmidt, Ana Patricia Ayala, David Moher, Matthew J. Page, Jonathan Koffel, PRISMA-S Group
Software Mentions: 3
Published: over 3 years ago

10.1038/sdata.2018.111

Auto-generated materials database of Curie and Néel temperatures via semi-supervised relationship extraction
Cited by: 78
Author(s): Callum J. Court, Jacqueline M. Cole
Software Mentions: 3
Published: over 6 years ago

10.3389/fnins.2018.00587

BrainWave: A Matlab Toolbox for Beamformer Source Analysis of MEG Data
Cited by: 19
Author(s): Cecilia Jobst, Paul Ferrari, Silvia Isabella, Douglas Cheyne
Software Mentions: 3
Published: over 6 years ago

10.12688/f1000research.12185.1

The new alchemy: Online networking, data sharing and research activity distribution tools for scientists
Cited by: 3
Author(s): Antony J. Williams, Lou Peck, Sean Ekins
Software Mentions: 3
Published: over 7 years ago

10.1038/s42003-020-01204-9

The archives are half-empty: an assessment of the availability of microbial community sequencing data
Cited by: 20
Author(s): Stephanie D. Jurburg, Maximilian Konzack, Nico Eisenhauer, Anna Heintz‐Buschart
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0241465

What triggers online help-seeking retransmission during the COVID-19 period? Empirical evidence from Chinese social media
Cited by: 26
Author(s): Chen Luo, Yuru Li, Anfan Chen, Yulong Tang
Software Mentions: 3
Published: about 4 years ago

10.1093/gigascience/giaa107

The on-premise data sharing infrastructure e!DAL: Foster FAIR data for faster data acquisition
Cited by: 10
Author(s): Daniel Arend, Patrick König, Astrid Junker, Uwe Scholz, Matthias Lange
Software Mentions: 3
Published: about 4 years ago

10.1038/s41597-019-0239-7

Multiple-data-based monthly geopotential model set LDCmgm90
Cited by: 10
Author(s): Wei Chen, Jiangshui Luo, Jim Ray, Ningmei Yu, Jian Cheng Li
Software Mentions: 3
Published: about 5 years ago

10.1099/mgen.0.000132

Completing bacterial genome assemblies with multiplex MinION sequencing
Cited by: 460
Author(s): Ryan R. Wick, Louise M. Judd, Claire L. Gorrie, Kathryn E. Holt
Software Mentions: 3
Published: about 7 years ago

10.1093/bib/bbw114

Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences
Cited by: 444
Author(s): Claudia Manzoni, Demis A. Kia, Jana Vandrovcová, John Hardy, Nicholas W. Wood, Patrick A. Lewis, Raffaele Ferrari
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12967-020-02540-4

Credible practice of modeling and simulation in healthcare: ten rules from a multidisciplinary perspective
Cited by: 50
Author(s): Ahmet Erdemir, Lealem Mulugeta, Joy P. Ku, Andrew Drach, Marc Horner, Tina Morrison, Grace C.Y. Peng, Rajanikanth Vadigepalli, William W. Lytton, Jerry G. Myers
Software Mentions: 2
Published: about 4 years ago

10.1186/s12915-019-0688-7

Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake
Cited by: 63
Author(s): Charlotte D. Vavourakis, Maliheh Mehrshad, Cherel Balkema, Rutger van Hall, Adrian‐Ştefan Andrei, Rohit Ghai, Dimitry Y. Sorokin, Gerard Muyzer
Software Mentions: 2
Published: over 5 years ago

10.1099/mgen.0.000437

Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv
Cited by: 8
Author(s): C. N’Dira Sanoussi, Mireia Coscollá, Boatema Ofori-Anyinam, Isaac Darko Otchere, Martín Antonio, Stefan Niemann, Julian Parkhill, Simon R. Harris, Dorothy Yeboah-Manu, Sébastien Gagneux, Leen Rigouts, Dissou Affolabi, Bouke C. de Jong, Conor J. Meehan
Software Mentions: 2
Published: over 3 years ago

10.12688/wellcomeopenres.15193.2

Geostatistical analysis of Malawi’s changing malaria transmission from 2010 to 2017
Cited by: 25
Author(s): Michael G. Chipeta, Emanuele Giorgi, Donnie Mategula, Peter M. Macharia, Chimwemwe Ligomba, Alinane Munyenyembe, James Chirombo, Austin Gumbo, Dianne J. Terlouw, Robert W. Snow, Michael Kayange
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1005873

A FAIR guide for data providers to maximise sharing of human genomic data
Cited by: 24
Author(s): Manuel Corpas, Nadezda V. Kovalevskaya, Amanda McMurray, Fiona Nielsen
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pcbi.1007809

Ten Simple Rules for a successful remote postdoc
Cited by: 8
Author(s): Kevin R. Burgio, Caitlin McDonough MacKenzie, Stephanie B. Borrelle, S. K. Morgan Ernest, Jacquelyn L. Gill, Kurt E. Ingeman, Amy K. Teffer, Ethan P. White
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1005278

Ten Simple Rules to Enable Multi-site Collaborations through Data Sharing
Cited by: 27
Author(s): Mary Regina Boland, Konrad J. Karczewski, Nicholas P. Tatonetti
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0237294

Decreased incidence, virus transmission capacity, and severity of COVID-19 at altitude on the American continent
Cited by: 27
Author(s): Christian Arias‐Reyes, Favio Carvajal-Rodriguez, Liliana Poma-Machicao, Fernanda Aliaga‐Raduán, Danuzia A. Marques, Natalia Zubieta-DeUrioste, Roberto A. Accinelli, Edith M. Schneider‐Gasser, Gustavo Zubieta-Calleja, Mathias Dutschmann, Jorge Soliz
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0230600

Effects of different fertilization modes on rice yield and quality under a rice-crab culture system
Cited by: 9
Author(s): Wanning Zhao, Hanling Liang, Yu Fu, Yubo Liu, Chen Yang, Tian Zhang, Tianyu Wang, Liyan Rong, Shuang Zhang, Zhaoxia Wu, Wei Sun
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0117619

Researcher Perspectives on Publication and Peer Review of Data
Cited by: 75
Author(s): John Ernest Kratz, Carly Strasser
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0249144

Planning deficits in Huntington’s disease: A brain structural correlation by voxel-based morphometry
Cited by: 3
Author(s): Jesus Calderon-Villalon, Gabriel Ramírez-García, Juan Fernández-Ruíz, Fernanda Sangri-Gil, Aurelio Campos‐Romo, Víctor Gálvez
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0253824

An introduction to DUIA: The database on urban inequality and amenities
Cited by: 1
Author(s): Frederico Roman Ramos, Justus Uitermark
Software Mentions: 2
Published: over 3 years ago

10.1111/febs.15261

Data libraries – the missing element for modeling biological systems
Cited by: 3
Author(s): Anastasia Baryshnikova
Software Mentions: 2
Published: over 4 years ago

10.3389/fnhum.2021.682661

Overfitting the Literature to One Set of Stimuli and Data
Cited by: 13
Author(s): Tijl Grootswagers, Amanda K. Robinson
Software Mentions: 2
Published: over 3 years ago

10.1038/sdata.2014.11

Genomes and phenomes of a population of outbred rats and its progenitors
Cited by: 28
Author(s): Amelie Baud, Victor Guryev, Oliver Hummel, Martina Johannesson, Amelie Baud, Victor Guryev, Oliver Hummel, Martina Johannesson, Roel Hermsen, Pernilla Stridh, Delyth Graham, Martin W. McBride, Tatiana Foroud, Sophie Caldérari, Margarita Diez, Johan Öckinger, Amennai Daniel Beyeen, Alan Gillett, Nada Abdelmagid, André Ortlieb Guerreiro-Cacais, Maja Jagodic, Jonatan Tuncel, Ulrika Norin, Elisabeth Beattie, Ngan Huynh, William H. Miller, Daniel L. Koller, Imranul Alam, Samreen Falak, Mary Osborne-Pellegrin, Esther Martínez-Membrives, Toni Cañete, Gloria Blázquez, Elia Vicens-Costa, Carme Mont-Cardona, Sira Díaz-Morán, Adolf Tobeña, Diana Zélénika, Kathrin Saar, Giannino Patone, Anja Bauerfeind, Marie-Thérèse Bihoreau, Matthias Heinig, Youngae Lee, Carola Rintisch, Herbert Schulz, David A. Wheeler, Kim C. Worley, Donna M. Muzny, Richard A. Gibbs, Mark Lathrop, Nico Lansu, Pim W. Toonen, Frans Paul Ruzius, Ewart de Bruijn, Heidi Hauser, David J. Adams, Thomas Keane, Santosh S. Atanur, Tim Aitman, Paul Flicek, Tomas Malinauskas, Elizabeth Jones, Diana Ekman, Regina López-Aumatell, Anna F. Dominiczak, Rikard Holmdahl, Tomas Olsson, Dominique Guyader, Norbert Hübner, Alberto Fernández-Teruel, Edwin Cuppen, Richard Mott, Jonathan Flint, Jonathan Flint
Software Mentions: 2
Published: over 10 years ago

10.1038/s41597-019-0191-6

De novo transcriptome assembly and analysis of the freshwater araphid diatom Fragilaria radians, Lake Baikal
Cited by: 14
Author(s): Yuri P. Galachyants, Yulia Zakharova, N. A. Volokitina, Alexey Anatolyevich Morozov, Ye. V. Likhoshway, М.А. Грачев
Software Mentions: 2
Published: about 5 years ago

10.1038/s41597-019-0211-6

Upper limb activity of twenty myoelectric prosthesis users and twenty healthy anatomically intact adults
Cited by: 10
Author(s): Alix Chadwell, Laurence Kenney, Malcolm Granat, Sibylle B. Thies, Adam Galpin, John Head
Software Mentions: 2
Published: about 5 years ago

10.1038/s41597-020-0368-z

Reference values for resting and post exercise hemodynamic parameters in a 6–18 year old population
Cited by: 1
Author(s): Katalin Havasi, Zoltán Maróti, Andrea Emese Jakab, István Raskó, Tibor Kalmár, Csaba Bereczki
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41597-020-0389-7

A voltage and current measurement dataset for plug load appliance identification in households
Cited by: 42
Author(s): Roberto Medico, Leen De Baets, Jingkun Gao, Suman Giri, Emre Kara, Tom Dhaene, Chris Develder, Mario Bergés, Dirk Deschrijver
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41597-020-0563-y

A database of human gait performance on irregular and uneven surfaces collected by wearable sensors
Cited by: 49
Author(s): Yue Luo, Sarah Coppola, Philippe C. Dixon, Song Li, Jack Dennerlein, Boyi Hu
Software Mentions: 2
Published: over 4 years ago

10.1038/s41597-020-00793-8

An Indo-Pacific coral spawning database
Cited by: 24
Author(s): Andrew H. Baird, James R. Guest, Alasdair J. Edwards, Andrew G. Bauman, Jessica Bouwmeester, Hanaka Mera, David Abrego, Mariana Álvarez‐Noriega, Russel C. Babcock, Miguel Barbosa, Victor Bonito, John A. Burt, Patrick C. Cabaitan, Ching Fong Chang, Suchana Chavanich, Chaolun A. Chen, Chieh Jhen Chen, Wei-Jen Chen, Fung Chen Chung, Sean R. Connolly, Vivian R. Cumbo, María Dornelas, Christopher Doropoulos, Gal Eyal, Lee Eyal-Shaham, Nur Fadli, Joana Figueiredo, Jean‐François Flot, Sze Hoon Gan, Elizabeth Gomez, Erin Graham, Mila Grinblat, Nataly Gutiérrez-Isaza, Saki Harii, Peter Lynton Harrison, Masayuki Hatta, Nina Ann Jin Ho, Gaetan Hoarau, Mia O. Hoogenboom, Emily J. Howells, Akira Iguchi, Naoko Isomura, Emmeline A. Jamodiong, Suppakarn Jandang, Jude Keyse, Seiya Kitanobo, Narinratana Kongjandtre, Chao Yang Kuo, Charlon A. Ligson, Che Hung Lin, Jeffrey Low, Yossi Loya, Elizaldy A. Maboloc, Joshua S. Madin, Takuma Mezaki, Choo Zhi Min, Masaya Morita, Aurélie Moya, Su Hwei Neo, Matthew R. Nitschke, Satoshi Nojima, Yoko Nozawa, Srisakul Piromvaragorn, Sakanan Plathong, Eneour Puill-Stephan, Kate M. Quigley, Catalina Ramírez‐Portilla, Gerard F. Ricardo, Kazuhiko Sakai, Eugenia M. Sampayo, Tom Shlesinger, Leony Sikim, Chris Simpson, Carrie A Sims, Frédéric Sinniger, Davies Austin Spiji, Tracy D. Tabalanza, Chung Hong Tan, Tullia Isotta Terraneo, Gergely Torda, James True, Karenne Tun, Kareen Vicentuan, Voranop Viyakarn, Zarinah Waheed, Selina Ward, Bette L. Willis, Rachael M. Woods, Erika Woolsey, Hiromi Yamamoto, Salim Yusuf
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41597-021-00899-7

A magnetoencephalography dataset for motor and cognitive imagery-based brain-computer interface
Cited by: 12
Author(s): Dheeraj Rathee, Haider Raza, Sujit Roy, Girijesh Prasad
Software Mentions: 2
Published: over 3 years ago

10.1038/s41597-021-00980-1

A curated dataset of modern and ancient high-coverage shotgun human genomes
Cited by: 2
Author(s): Pierpaolo Maisano Delser, Eppie R. Jones, Անահիտ Հովհաննիսյան, Lara M. Cassidy, Ron Pinhasi, Andrea Manica
Software Mentions: 2
Published: over 3 years ago

10.1186/s13643-020-01542-z

PRISMA-S: an extension to the PRISMA Statement for Reporting Literature Searches in Systematic Reviews
Cited by: 767
Author(s): Melissa L. Rethlefsen, Shona Kirtley, Siw Waffenschmidt, Ana Patricia Ayala, David Moher, Matthew J. Page, Jonathan Koffel, Heather Blunt, Tara Brigham, Steven D. Chang, Justin Clark, Aislinn Conway, Rachel Couban, Shelley de Kock, Kelly Farrah, Paul Fehrmann, Margaret Foster, Susan A. Fowler, Julie Glanville, Elizabeth Harris, Lilian Hoffecker, Jaana Isojärvi, David Kaunelis, Hans Ket, Paul Levay, Jennifer Lyon, Jessie McGowan, M Hassan Murad, Joey Nicholson, Virginia Pannabecker, Robin Paynter, Rachel Pinotti, Amanda Ross‐White, Margaret Sampson, Tracy Shields, Adrienne Stevens, Anthea Sutton, Elizabeth Weinfurter, Kath Wright, Sarah Young
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13643-021-01670-0

The REPRISE project: protocol for an evaluation of REProducibility and Replicability In Syntheses of Evidence
Cited by: 17
Author(s): Matthew J. Page, David Moher, Fiona Fidler, Julian P T Higgins, Sue Brennan, Neal R. Haddaway, Daniel G Hamilton, Raju Kanukula, Sathya Karunananthan, Lara Maxwell, Steve McDonald, Shinichi Nakagawa, David Nunan, Peter Tugwell, Vivian Welch, Joanne E. McKenzie
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.66567

Allosteric communication in class A β-lactamases occurs via cooperative coupling of loop dynamics
Cited by: 35
Author(s): Ioannis Galdadas, Shen Qu, A. Sofia F. Oliveira, Edgar Olehnovics, Andrew R Mack, María F Mojica, Pratul K. Agarwal, C.L. Tooke, Francesco Luigi Gervasio, James Spencer, Robert A. Bonomo, Adrian J. Mulholland, Shozeb Haider
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms22062847

An Inverse QSAR Method Based on a Two-Layered Model and Integer Programming
Cited by: 5
Author(s): Yu Shi, Jianshen Zhu, Naveed Ahmed Azam, Kazuya Haraguchi, Liang Zhao, Hiroshi Nagamochi, Tatsuya Akutsu
Software Mentions: 2
Published: over 3 years ago

10.1038/s41597-021-00994-9

A dataset of distribution and diversity of blood-sucking mites in China
Cited by: 7
Author(s): Fan-Fei Meng, Qiang Xu, Jinjin Chen, Yang Ji, Wenhui Zhang, Zheng-Wei Fan, Guoping Zhao, Bao-Gui Jiang, Taoxing Shi, Li‐Qun Fang, Wei Liu
Software Mentions: 1
Published: over 3 years ago

10.1038/sdata.2015.57

Australian sea-floor survey data, with images and expert annotations
Cited by: 32
Author(s): Michael Bewley, Ariell Friedman, Renata Ferrari, Nicole Hill, Renae K. Hovey, Neville S. Barrett, Ezequiel M. Marzinelli, Oscar Pizarro, Will F. Figueira, Lisa Meyer, Russ Babcock, Lynda M. Bellchambers, Maria Byrne, Stefan B. Williams
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0204722

What have we learned from the time trend of mass shootings in the U.S.?
Cited by: 36
Author(s): Ping‐I Lin, Fang Lin, Drew H. Barzman, Monir Hossain
Software Mentions: 1
Published: about 6 years ago

10.1038/sdata.2017.19

Knocking down the obstacles to functional genomics data sharing
Cited by: 3
Author(s): Kaylene J. Simpson, Jennifer A. Smith
Software Mentions: 1
Published: over 7 years ago

10.1038/sdata.2017.58

Open for business
Cited by: 3
Author(s):
Software Mentions: 1
Published: over 7 years ago

10.1038/sdata.2017.77

Matched computed tomography segmentation and demographic data for oropharyngeal cancer radiomics challenges
Cited by: 55
Author(s): Hesham Elhalawani, A.S.R. Mohamed, Arica White, James Zafereo, Andrew Wong, Joel Berends, Shady Abohashem, Bowman Williams, Jeremy M. Aymard, Aasheesh Kanwar, Subha Perni, Crosby D. Rock, Luke C Cooksey, Shauna Campbell, Yao Ding, Stephen Y. Lai, Elisabeta G. Marai, David M. Vock, Guadalupe Canahuate, John Freymann, Keyvan Farahani, Jayashree Kalpathy–Cramer, Clifton D. Fuller
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1006191

Ten simple rules for measuring the impact of workshops
Cited by: 21
Author(s): Shoaib Sufi, Aleksandra Nenadić, Raniere Silva, Beth M. Duckles, Iveta Simera, J Beyer, Caroline Struthers, Terhi Nurmikko-Fuller, Louisa J. Bellis, Wadud Miah, Adriana Wilde, Iain Emsley, Olivier Philippe, Melissa Balzano, Sara Coelho, Heather Ford, C. T. Jones, Vanessa Higgins
Software Mentions: 1
Published: about 6 years ago

10.1038/sdata.2018.8

Dynamic contrast-enhanced magnetic resonance imaging for head and neck cancers
Cited by: 9
Author(s): Hesham Elhalawani, Rachel B. Ger, A.S.R. Mohamed, Musaddiq J. Awan, Yao Ding, Kimberly Li, Xenia Fave, Andrew Beers, Brandon Driscoll, David A. Hormuth, Petra J. van Houdt, Renjie He, Shouhao Zhou, Kelsey Boitnott Mathieu, Heng Li, Catherine Coolens, Caroline Chung, James A. Bankson, Wei Huang, Jihong Wang, Vlad C. Sandulache, Stephen Y. Lai, Rebecca M. Howell, R. Jason Stafford, Thomas E. Yankeelov, Uulke A. van der Heide, Steven J. Frank, Daniel P. Barboriak, John D. Hazle, Laurence Edward Court, Jayashree Kalpathy–Cramer, Clifton D. Fuller
Software Mentions: 1
Published: almost 7 years ago

10.1038/sdata.2018.12

Compilation of climate data from heterogeneous networks across the Hawaiian Islands
Cited by: 27
Author(s): Ryan J. Longman, Thomas W. Giambelluca, Michael A. Nullet, Abby G. Frazier, Kevin Kodama, Shelley D. Crausbay, Paul D. Krushelnycky, Susan Cordell, Martyn P. Clark, Andy Newman, Jeffrey R. Arnold
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1007854

Ten simple rules for making training materials FAIR
Cited by: 23
Author(s): Leyla García, Bérénice Batut, Melissa L. Burke, Mateusz Kuzak, Fotis Psomopoulos, Ricardo Arcila, Teresa K. Attwood, Niall Beard, Denise Carvalho-Silva, Alexandros C. Dimopoulos, Victoria Domínguez Del Angel, Michel Dumontier, Kim Gurwitz, Roland Krause, Peter McQuilton, Loredana Le Pera, Sarah Morgan, Päivi Rauste, Allegra Via, Pascal Kahlem, Gabriella Rustici, Celia van Gelder, Patricia M. Palagi
Software Mentions: 1
Published: over 4 years ago

10.1038/sdata.2018.127

A global dataset of river network geometry
Cited by: 22
Author(s): Emanuele Giachetta, Sean D. Willett
Software Mentions: 1
Published: over 6 years ago

10.1038/sdata.2018.301

A collection of rumen bacteriome data from 334 mid-lactation dairy cows
Cited by: 11
Author(s): Hui-Zeng Sun, Mingyuan Xue, Le Luo Guan, Jianxin Liu
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pbio.2000933

Languages Are Still a Major Barrier to Global Science
Cited by: 321
Author(s): Tatsuya Amano, Juan P. González‐Varo, William J. Sutherland
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41597-019-0075-9

A Landsat-based vegetation trend product of the Tibetan Plateau for the time-period 1990–2018
Cited by: 31
Author(s): Fabian Ewald Fassnacht, Christoph Schiller, Teja Kattenborn, Xinquan Zhao, Jiapeng Qu
Software Mentions: 1
Published: over 5 years ago

10.1093/sysbio/syy090

Phylotocol: Promoting Transparency and Overcoming Bias in Phylogenetics
Cited by: 20
Author(s): Melissa B. DeBiasse, Joseph F. Ryan
Software Mentions: 1
Published: almost 6 years ago

10.3390/antiox10030345

Meta-Analysis of Oxidative Transcriptomes in Insects
Cited by: 17
Author(s): Hidemasa Bono
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pbio.1002295

Public Data Archiving in Ecology and Evolution: How Well Are We Doing?
Cited by: 187
Author(s): Dominique G. Roche, Loeske E. B. Kruuk, Robert Lanfear, Sandra A. Binning
Software Mentions: 1
Published: about 9 years ago

10.2196/19762

Automating the Generation of Antimicrobial Resistance Surveillance Reports: Proof-of-Concept Study Involving Seven Hospitals in Seven Countries
Cited by: 11
Author(s): Cherry Lim, Thyl Miliya, Vilada Chansamouth, Myint Thazin Aung, Abhilasha Karkey, Prapit Teparrukkul, Rahul Batra, Nguyen Phu Huong Lan, John Stelling, Paul Turner, Elizabeth A. Ashley, H. Rogier van Doorn, Htet Naing Lin, Clare Ling, Soawapak Hinjoy, Sopon Iamsirithaworn, Susanna Dunachie, Tri Wangrangsimakul, Viriya Hantrakun, William Schilling, Lam Minh Yen, Le Van Tan, Htay Htay Hlaing, Mayfong Mayxay, Manivanh Vongsouvath, Buddha Basnyat, Jonathan D Edgeworth, Sharon J. Peacock, Guy Thwaites, Nicholas P. J. Day, Ben S. Cooper, Direk Limmathurotsakul
Software Mentions: 1
Published: about 4 years ago

10.1136/bmjopen-2015-008724

Internet-delivered cognitive-behavioural therapy for concerned significant others of people with problem gambling: study protocol for a randomised wait-list controlled trial
Cited by: 16
Author(s): Kristoffer Magnusson, Anders Nilsson, Clara Hellner Gumpert, Gerhard Andersson, Per Carlbring
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41597-020-0398-6

Building fault detection data to aid diagnostic algorithm creation and performance testing
Cited by: 46
Author(s): Jessica Granderson, Guanjing Lin, Ari Harding, Piljae Im, Yan Chen
Software Mentions: 1
Published: over 4 years ago

10.1038/s41597-020-0448-0

Epidemiological data from the COVID-19 outbreak, real-time case information
Cited by: 274
Author(s): Bo Xu, Bernardo Gutiérrez, Sumiko R. Mekaru, Kara Sewalk, Lauren Goodwin, Alyssa Loskill, Emily Cohn, Yulin Hswen, Sarah C. Hill, María Mercedes Cobo, Alexander E. Zarebski, Sabrina Li, Chieh-Hsi Wu, Erin Hulland, J. Morgan, Lin Wang, Katelynn O’Brien, Samuel V. Scarpino, John S. Brownstein, Oliver G. Pybus, David M. Pigott, Moritz U. G. Kraemer
Software Mentions: 1
Published: over 4 years ago

10.1186/s40594-021-00304-0

Establishing a baseline of science communication skills in an undergraduate environmental science course
Cited by: 9
Author(s): Rashmi Shivni, Christina Cline, Morgan Newport, Shupei Yuan, Heather E. Bergan-Roller
Software Mentions: 1
Published: over 3 years ago

10.1038/s41597-020-00641-9

Facilitating author-driven, machine-readable descriptions with the new minISA metadata format
Cited by: 0
Author(s):
Software Mentions: 1
Published: about 4 years ago

10.1186/s13007-017-0168-4

An image analysis pipeline for automated classification of imaging light conditions and for quantification of wheat canopy cover time series in field phenotyping
Cited by: 38
Author(s): Kang Yu, Norbert Kirchgeßner, Christoph Grieder, Achim Walter, Andreas Hund
Software Mentions: 1
Published: over 7 years ago

10.1038/s41597-020-00776-9

The MoCA dataset, kinematic and multi-view visual streams of fine-grained cooking actions
Cited by: 12
Author(s): Elena Nicora, Gaurvi Goyal, Nicoletta Noceti, Alessia Vignolo, Alessandra Sciutti, Francesca Odone
Software Mentions: 1
Published: almost 4 years ago

10.3390/medsci7090093

Diuretic Activity of a Novel Peripherally-Restricted Orally-Active Kappa Opioid Receptor Agonist
Cited by: 1
Author(s): Tyler Beck, Matthew A. Hapstack, Gautam S. Ghatnekar, Thomas A. Dix
Software Mentions: 1
Published: about 5 years ago

10.5195/jmla.2017.88

Open Science Framework (OSF)
Cited by: 268
Author(s): Erin D. Foster, Ariel Deardorff
Software Mentions: 1
Published: over 7 years ago

10.1038/s41597-021-00866-2

Harmonized and high-quality datasets of aerosol optical depth at a US continental site, 1997–2018
Cited by: 1
Author(s): Evgueni I. Kassianov, Erol Cromwell, Justin Monroe, Laura Riihimaki, Connor Flynn, J. Barnard, Joseph Michalsky, Gary Hodges, Yan Shi, J. M. Comstock
Software Mentions: 1
Published: over 3 years ago

10.1038/s41597-021-00883-1

Continuous sensorimotor rhythm based brain computer interface learning in a large population
Cited by: 19
Author(s): James Stieger, Stephen A. Engel, Bin He
Software Mentions: 1
Published: over 3 years ago

10.1186/s12915-021-01007-2

Gregarine single-cell transcriptomics reveals differential mitochondrial remodeling and adaptation in apicomplexans
Cited by: 24
Author(s): Eric D. Salomaki, Kristina X. Terpis, Sonja Rueckert, Michael Kotyk, Zuzana Kotyková Varadínová, Ivan Čepička, Christopher E. Lane, Martin Kolísko
Software Mentions: 1
Published: over 3 years ago

10.1038/s41597-021-00927-6

Dataset of low global warming potential refrigerant refrigeration system for fault detection and diagnostics
Cited by: 8
Author(s): Jian Sun, Piljae Im, Yeonjin Bae, Jeff Munk, Teja Kuruganti, Brian Fricke
Software Mentions: 1
Published: over 3 years ago

10.1093/bfgp/elw026

Goodbye genome paper, hello genome report: the increasing popularity of ‘genome announcements’ and their impact on science: Table 1.
Cited by: 10
Author(s): David Roy Smith
Software Mentions: 1
Published: over 8 years ago

10.1038/s41597-021-00971-2

Smart Distance Lab’s art fair, experimental data on social distancing during the COVID-19 pandemic
Cited by: 7
Author(s): Charlotte Coosje Tanis, Nina M. Leach, Sandra Jeanette Geiger, Floor Nauta, Fabian Dablander, Frenk van Harreveld, Sanne de Wit, Gerard Kanters, Jop Knoppers, Diederik A. W. Markus, Rick R. M. Bouten, Quinten H. Oostvogel, Meier Boersma, Maya V. van der Steenhoven, Denny Borsboom, Tessa F. Blanken
Software Mentions: 1
Published: over 3 years ago

10.12688/f1000research.9379.1

A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos
Cited by: 10
Author(s): Martin Scharm, Dagmar Waltemath
Software Mentions: 1
Published: about 8 years ago

10.12688/f1000research.21208.2

Quantitative approach to numbers and sizes: Generation of primary neurospheres from the dorsal lateral ganglionic eminence of late embryonic mice
Cited by: 0
Author(s): Christopher A. Blackwood
Software Mentions: 1
Published: over 4 years ago

10.1038/s41597-021-00952-5

Dating historical droughts from religious ceremonies, the international pro pluvia rogation database
Cited by: 1
Author(s): Fernando Domínguez‐Castro, María João Alcoforado, Nieves Bravo-Paredes, María Fernández-Fernández, Marcelo Fragoso, M. C. Gallego, Ricardo García Herrera, Emmanuel Garnier, Gustavo Garza-Merodio, Ahmed M. El Kenawy, Borja Latorre, Iván Noguera, Dhais Peña‐Angulo, F. Reig, Luís Pedro Silva, José M. Vaquero, Sergio Martín Vicente Serrano
Software Mentions: 1
Published: over 3 years ago

10.2196/jmir.3214

How Feedback Biases Give Ineffective Medical Treatments a Good Reputation
Cited by: 23
Author(s): Mícheál de Barra, Kimmo Eriksson, Pontus Strimling
Software Mentions: 1
Published: over 10 years ago

10.1002/ece3.7008

Online but not remote: Adapting field‐based ecology laboratories for online learning
Cited by: 7
Author(s): Christoph Richter, Christopher J. Lortie, Tamara Kelly, Alessandro Filazzola, Krystal Nunes, Raani Sarkar
Software Mentions: 1
Published: about 4 years ago

10.3389/fnins.2018.00765

Estimating the Timing of Cognitive Operations With MEG/EEG Latency Measures: A Primer, a Brief Tutorial, and an Implementation of Various Methods
Cited by: 47
Author(s): Heinrich René Liesefeld
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2021.645735

Phylogenomics With Hyb-Seq Unravels Korean Hosta Evolution
Cited by: 2
Author(s): Mi‐Jeong Yoo, Byoung-Yoon Lee, Sangtae Kim, Chae Eun Lim
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2018.01495

Heterologous Expression of the Transcription Factor EsNAC1 in Arabidopsis Enhances Abiotic Stress Resistance and Retards Growth by Regulating the Expression of Different Target Genes
Cited by: 16
Author(s): Can Liu, Qinghua Sun, Lei Zhao, Zhaoxia Li, Zhenghua Peng, Juren Zhang
Software Mentions: 1
Published: about 6 years ago

10.1007/s13222-019-00317-8

A Link is not Enough – Reproducibility of Data
Cited by: 12
Author(s): Mateusz Pawlik, Thomas Hütter, Daniel Kocher, Willi Mann, Nikolaus Augsten
Software Mentions: 1
Published: over 5 years ago

10.1016/j.dib.2016.11.036

A dataset of multiresolution functional brain parcellations in an elderly population with no or mild cognitive impairment
Cited by: 1
Author(s): Angela Tam, Christian Dansereau, AmanPreet Badhwar, Pierre Orban, Sylvie Belleville, Howard Chertkow, Alain Dagher, Alexandru Hanganu, Oury Monchi, Pedro Rosa‐Neto, Amir Shmuel, John C.S. Breitner, Pierre Bellec
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0067460

LabTrove: A Lightweight, Web Based, Laboratory “Blog” as a Route towards a Marked Up Record of Work in a Bioscience Research Laboratory
Cited by: 24
Author(s): Andrew J. Milsted, Jennifer R. Hale, Jeremy G. Frey, Cameron Neylon
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0089184

Comparing Distributions of Color Words: Pitfalls and Metric Choices
Cited by: 14
Author(s): Mikael Vejdemo-Johansson, Susanne Vejdemo, Carl Henrik Ek
Software Mentions: 1
Published: over 10 years ago

Projects: pypi: figshare

Papers Mentioning figshare 103