Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/sdata.2016.90

https://doi.org/10.1038/sdata.2016.90

Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice

Cited by: 5
Author(s): Tonatiuh Peña Centeno, Orr Shomroni, Magali Hennion, Rashi Halder, Ramón Vidal, Raza-Ur Rahman, Stefan Bonn
Published: almost 8 years ago

Software Mentions 7

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DEXSeq
Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226
bioconductor: MEDIPS
DNA IP-seq data analysis
Papers that mentioned: 89
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: figshare
Command-line client for figshare API
Papers that mentioned: 103
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: pyQPCR
pyQPCR: quantitative PCR data analysis
Papers that mentioned: 3