Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Cheetah
https://packages.ecosyste.ms/registries/pypi.org/packages/Cheetah
Cheetah is a template engine and code generation tool.
26 versions
Latest release: about 1 year ago
2 dependent packages
14,212 downloads last month
Papers Mentioning Cheetah 90
10.1107/S205979831801238X
Processing serial crystallography data with <i>CrystFEL</i>: a step-by-step guideCited by: 48
Author(s): Thomas A. White
Software Mentions: 5
Published: almost 6 years ago
10.1107/S1600576719005363
ClickX: a visualization-based program for preprocessing of serial crystallography dataCited by: 4
Author(s): Xuanxuan Li, Chufeng Li, Haiguang Liu
Software Mentions: 4
Published: over 5 years ago
10.1107/S205225251700570X
Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiationCited by: 123
Author(s): José M. Martín-García, Chelsie E. Conrad, Garrett Nelson, Natasha Stander, Nadia A. Zatsepin, James Zook, Liya Zhu, James H. Geiger, Eugene Chun, David J. Kissick, Mark Hilgart, Craig M. Ogata, Andrii Ishchenko, Nirupa Nagaratnam, Shatabdi Roy-Chowdhury, Jesse Coe, Ganesh Subramanian, Alexander F. Schäffer, Daniel James, Gihan Ketwala, Nagarajan Venugopalan, Shenglan Xu, Stephen Corcoran, D.R. Ferguson, Uwe Weierstall, John C. H. Spence, Vadim Cherezov, Petra Fromme, Robert F. Fischetti, Wei Liu
Software Mentions: 3
Published: over 7 years ago
10.1038/sdata.2016.64
Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light SourceCited by: 60
Author(s): Anna Munke, Jakob Andreasson, Andrew Aquila, Salah Awel, Kartik Ayyer, Anton Barty, Richard Bean, Peter Berntsen, Johan Bielecki, Sébastien Boutet, Maximilian Bucher, Henry N. Chapman, Benedikt J. Daurer, Hasan DeMi̇rci̇, Veit Elser, Petra Fromme, János Hajdu, Max F. Hantke, Akifumi Higashiura, Brenda G. Hogue, Ahmad Hosseinizadeh, Yoonhee Kim, Richard A. Kirian, Hemanth K. N. Reddy, Ti Yen Lan, Daniel Larsson, Haiguang Liu, N. Duane Loh, Filipe R. N. C. Maia, Adrian P. Mancuso, Kerstin Mühlig, Atsushi Nakagawa, Daewoong Nam, Garrett Nelson, Carl Nettelblad, Kenta Okamoto, A. Ourmazd, M. Franklin Rose, Gijs van der Schot, Peter Schwander, M. Seibert, Jonas A. Sellberg, Raymond G. Sierra, Changyong Song, Martin Svenda, Nicuşor Tı̂mneanu, Ivan A. Vartanyants, Daniel Westphal, Max O. Wiedorn, Garth J. Williams, P. Lourdu Xavier, Chun Hong Yoon, James Zook
Software Mentions: 3
Published: over 8 years ago
10.1107/S1600576720002423
Application of a high-throughput microcrystal delivery system to serial femtosecond crystallographyCited by: 21
Author(s): Donghyeon Lee, Sehan Park, Keondo Lee, Jang Woo Kim, Gisu Park, Ki Hyun Nam, Sangwon Baek, Wan Kyun Chung, Jong‐Lam Lee, Yunje Cho, Jaehyun Park
Software Mentions: 3
Published: over 4 years ago
10.3389/fnins.2013.00074
Abrupt changes in the patterns and complexity of anterior cingulate cortex activity when food is introduced into an environmentCited by: 14
Author(s): Barak F. Caracheo, Eldon Emberly, Shirin Hadizadeh, James M. Hyman, Jeremy K. Seamans
Software Mentions: 3
Published: almost 12 years ago
10.1107/S0907444913013620
Crystallographic data processing for free-electron laser sourcesCited by: 120
Author(s): Thomas A. White, Anton Barty, Francesco Stellato, James M. Holton, Richard A. Kirian, Nadia A. Zatsepin, Henry N. Chapman
Software Mentions: 3
Published: over 11 years ago
10.1107/S1600576714007626
<i>Cheetah</i>: software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction dataCited by: 335
Author(s): Anton Barty, Richard A. Kirian, Filipe R. N. C. Maia, Max F. Hantke, Chun Hong Yoon, Thomas A. White, Henry N. Chapman
Software Mentions: 3
Published: over 10 years ago
10.1107/S1600576716005720
Data processing pipeline for serial femtosecond crystallography at SACLACited by: 71
Author(s): Takanori Nakane, Yasumasa Joti, Kensuke Tono, Makina Yabashi, Eriko Nango, So Iwata, Ryuichiro Ishitani, Osamu Nureki
Software Mentions: 3
Published: over 8 years ago
10.1038/s41598-019-52825-y
A host dTMP-bound structure of T4 phage dCMP hydroxymethylase mutant using an X-ray free electron laserCited by: 2
Author(s): Si Hoon Park, Jaehyun Park, Sang Jae Lee, Woo Seok Yang, Sehan Park, Kyungdo Kim, Zee Yong Park, Hyun Kyu Song
Software Mentions: 3
Published: about 5 years ago
10.1107/S2052252519001854
Evaluation of the performance of classification algorithms for XFEL single-particle imaging dataCited by: 36
Author(s): Yingchen Shi, Ke Yin, Xue–Cheng Tai, Hasan DeMi̇rci̇, Ahmad Hosseinizadeh, Brenda G. Hogue, Haoyuan Li, A. Ourmazd, Peter Schwander, Ivan A. Vartanyants, Chun Hong Yoon, Andrew Aquila, Haiguang Liu
Software Mentions: 3
Published: over 5 years ago
10.1107/S2052252518010047
Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imagingCited by: 39
Author(s): Ida Lundholm, Jonas A. Sellberg, Tomas Ekeberg, Max F. Hantke, Kenta Okamoto, Gijs van der Schot, Jakob Andreasson, Anton Barty, Johan Bielecki, Petr Brůža, Max Bucher, S. Carron, Benedikt J. Daurer, Ken Ferguson, Dirk Hasse, J. Krzywiński, Daniel Larsson, Andrew J. Morgan, Kerstin Mühlig, M. Müller, Carl Nettelblad, Alberto Pietrini, Hemanth K. N. Reddy, Daniela Rupp, Mario Sauppe, M. Marvin Seibert, Martin Svenda, Michelle Swiggers, Nicuşor Tı̂mneanu, Anatoli Ulmer, Daniel Westphal, Garth J. Williams, Alessandro Zani, G. Faigel, Henry N. Chapman, Thomas Möller, Christoph Bostedt, Jànos Hajdu, Tais Gorkhover, Filipe R. N. C. Maia
Software Mentions: 3
Published: about 6 years ago
10.1107/S1600576716004337
Facilitating model reconstruction for single-particle scattering using small-angle X-ray scattering methodsCited by: 4
Author(s): Shuo Ma, Haiguang Liu
Software Mentions: 2
Published: over 8 years ago
10.3389/fncel.2018.00138
Inducible Knockout of the Cyclin-Dependent Kinase 5 Activator p35 Alters Hippocampal Spatial Coding and Neuronal ExcitabilityCited by: 3
Author(s): Eriko Kamiki, Roman Boehringer, Denis Polygalov, Toshio Ohshima, Thomas J. McHugh
Software Mentions: 2
Published: over 6 years ago
10.1107/S2052252518014641
Structure-factor amplitude reconstruction from serial femtosecond crystallography of two-dimensional membrane-protein crystalsCited by: 1
Author(s): Cecilia M. Casadei, Karol Nass, Anton Barty, Mark S. Hunter, Celestino Padeste, Ching‐Ju Tsai, Sébastien Boutet, Marc Messerschmidt, L. Sala, Garth J. Williams, D. Ozerov, Matthew A. Coleman, Xiao Dan Li, Matthias Frank, Bill Pedrini
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0220751
Low-cost solution for rodent home-cage behaviour monitoringCited by: 51
Author(s): Surjeet Singh, Edgar Bermudez-Contreras, Mojtaba Nazari, Robert J. Sutherland, Majid H. Mohajerani
Software Mentions: 2
Published: over 5 years ago
10.1107/S2053230X20006172
Enhanced X-ray diffraction of <i>in vivo</i>-grown μNS crystals by viscous jets at XFELsCited by: 5
Author(s): Nirupa Nagaratnam, Yanyang Tang, Sabine Botha, Justin M. Saul, Chufeng Li, Hao Hu, Sahba Zaare, Mark S. Hunter, David Lowry, Uwe Weierstall, Nadia A. Zatsepin, John C. H. Spence, Ji Qiu, Joshua LaBaer, Petra Fromme, José M. Martín-García
Software Mentions: 2
Published: over 4 years ago
10.7554/eLife.36275
Real-time classification of experience-related ensemble spiking patterns for closed-loop applicationsCited by: 26
Author(s): Davide Ciliberti, Frédéric Michon, Fabian Kloosterman
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-019-51876-5
Longitudinal Functional Assessment of Brain Injury Induced by High-Intensity Ultrasound Pulse SequencesCited by: 4
Author(s): Meijun Ye, Krystyna Solarana, Harmain Rafi, Shyama Patel, Marjan Nabili, Yunbo Liu, Stanley Huang, Joan M. Fisher, Victor Krauthamer, Matthew R. Myers, Cristin G. Welle
Software Mentions: 2
Published: about 5 years ago
10.1523/ENEURO.0424-18.2019
The Rat Medial Prefrontal Cortex Exhibits Flexible Neural Activity States during the Performance of an Odor Span TaskCited by: 14
Author(s): Emanuela De Falco, An Liu, Ning Sun, Andrew J. Roebuck, Quentin Greba, Christopher C. Lapish
Software Mentions: 2
Published: over 5 years ago
10.1107/S2053273320001916
SPIND-TC: an indexing method for two-color X-ray diffraction dataCited by: 2
Author(s): Xuanxuan Li, Chufeng Li, Haiguang Liu
Software Mentions: 2
Published: over 4 years ago
10.3390/ijms20061401
Time-Resolved Macromolecular Crystallography at Pulsed X-ray SourcesCited by: 38
Author(s): Marius Schmidt
Software Mentions: 2
Published: over 5 years ago
10.3390/ijms20081943
Non-Cryogenic Structure and Dynamics of HIV-1 Integrase Catalytic Core Domain by X-ray Free-Electron LasersCited by: 6
Author(s): Jae-Hyun Park, Ji-Hye Yun, Yingchen Shi, Jeong A. Han, Xuanxuan Li, Zeyu Jin, Tae-Hee Kim, Jaehyun Park, Sehan Park, Haiguang Liu, Weontae Lee
Software Mentions: 2
Published: over 5 years ago
10.3390/ijms21093332
Polysaccharide-Based Injection Matrix for Serial CrystallographyCited by: 25
Author(s): Ki Hyun Nam
Software Mentions: 2
Published: over 4 years ago
10.1523/ENEURO.0023-18.2018
How Much Does Movement and Location Encoding Impact Prefrontal Cortex Activity? An Algorithmic Decoding Approach in Freely Moving RatsCited by: 9
Author(s): Adrian Lindsay, Barak F. Caracheo, Jamie J. S. Grewal, Daniel Leibovitz, Jeremy K. Seamans
Software Mentions: 2
Published: over 6 years ago
10.1107/S2052252517003591
Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulsesCited by: 60
Author(s): Benedikt J. Daurer, Kenta Okamoto, Johan Bielecki, Filipe R. N. C. Maia, Kerstin Mühlig, M. Marvin Seibert, Max F. Hantke, Carl Nettelblad, W. Henry Benner, Martin Svenda, Nicuşor Tı̂mneanu, Tomas Ekeberg, N. Duane Loh, Alberto Pietrini, Alessandro Zani, Asawari D. Rath, Daniel Westphal, Richard A. Kirian, Salah Awel, Max O. Wiedorn, Gijs van der Schot, Gunilla Carlsson, Dirk Hasse, Jonas A. Sellberg, Anton Barty, Jakob Andreasson, S. Boutet, Garth J. Williams, Jason E. Koglin, Inger Andersson, János Hajdu, Daniel Larsson
Software Mentions: 2
Published: over 7 years ago
10.1107/S2052252515013160
Serial femtosecond crystallography of soluble proteins in lipidic cubic phaseCited by: 60
Author(s): Raimund Fromme, Andrii Ishchenko, Markus Metz, Shatabdi Roy Chowdhury, Shibom Basu, Sébastien Boutet, Petra Fromme, Thomas A. White, Anton Barty, John C. H. Spence, Uwe Weierstall, Wei Liu, Vadim Cherezov
Software Mentions: 2
Published: over 9 years ago
10.1107/S205225251402702X
Serial femtosecond crystallography: the first five yearsCited by: 259
Author(s): Ilme Schlichting
Software Mentions: 2
Published: almost 10 years ago
10.3389/fcell.2021.678182
Requirements of Postnatal proBDNF in the Hippocampus for Spatial Memory Consolidation and Neural FunctionCited by: 10
Author(s): Wei Sun, Hong Cheng, Yang Yang, Dongdong Tang, Xiaolian Li, An Liu
Software Mentions: 2
Published: over 3 years ago
10.1107/S1600576719012846
High-viscosity sample-injection device for serial femtosecond crystallography at atmospheric pressureCited by: 38
Author(s): Yoshiaki Shimazu, Kensuke Tono, Tomoyuki Tanaka, Y. Yamanaka, Takanori Nakane, Chihiro Mori, Kanako Kimura, Takaaki Fujiwara, Michihiro Sugahara, Rie Tanaka, R. Bruce Doak, Tatsuro Shimamura, So Iwata, Eriko Nango, Makina Yabashi
Software Mentions: 2
Published: about 5 years ago
10.3389/fnsys.2014.00004
Back to front: cerebellar connections and interactions with the prefrontal cortexCited by: 117
Author(s): Thomas C. Watson, Nadine Becker, Richard Apps, Matthew W. Jones
Software Mentions: 2
Published: almost 11 years ago
10.1107/S1600577518004873
A convolutional neural network-based screening tool for X-ray serial crystallographyCited by: 36
Author(s): Tsung Wei Ke, Aaron S. Brewster, Stella X. Yu, Daniela Ushizima, Chao Yang, Nicholas K. Sauter
Software Mentions: 2
Published: over 6 years ago
10.1038/srep14964
Characterization of spatio-temporal epidural event-related potentials for mouse models of psychiatric disordersCited by: 4
Author(s): Xin Wang, António Pinto-Duarte, M. Margarita Behrens, Xianjin Zhou, Terrence J. Sejnowski
Software Mentions: 1
Published: about 9 years ago
10.1038/srep44628
Double-flow focused liquid injector for efficient serial femtosecond crystallographyCited by: 86
Author(s): D. Oberthüer, J. Knoška, Max O. Wiedorn, Kenneth R. Beyerlein, David Bushnell, Elena G. Kovaleva, Michaël Heymann, Lars Gumprecht, Richard A. Kirian, Anton Barty, Valerio Mariani, A. Tolstikova, Luigi Adriano, Salah Awel, Miriam Barthelmeß, Katerina Dörner, P. Lourdu Xavier, Oleksandr Yefanov, Daniel James, Garrett Nelson, Dingjie Wang, George D. Calvey, Yujie Chen, Andrea Schmidt, Michael Szczepek, Stefan Frielingsdorf, Oliver Lenz, Edward H. Snell, Philip J. Robinson, Božidar Šarler, Grega Belšak, Marjan Maček, Fabian Wilde, Andrew Aquila, Sébastien Boutet, Mao Liang, Mark S. Hunter, Patrick Scheerer, John D. Lipscomb, Uwe Weierstall, Roger D. Kornberg, John C. H. Spence, Lois Pollack, Henry N. Chapman, Saša Bajt
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-017-04817-z
Serial femtosecond crystallography structure of cytochrome c oxidase at room temperatureCited by: 32
Author(s): Rebecka Andersson, Cecilia Safari, Robert Dods, Eriko Nango, Rie Tanaka, A. Yamashita, Takanori Nakane, Kensuke Tono, Yasumasa Joti, Petra Båth, Elin Dunevall, Robert Bosman, Osamu Nureki, So Iwata, Richard Neutze, Gisela Brändén
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-018-33815-y
Multisensory integration in rodent tactile but not visual thalamusCited by: 23
Author(s): Malte Bieler, Xinfang Xu, Annette Marquardt, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: about 6 years ago
10.1107/S2052252515022927
<i>In cellulo</i>serial crystallography of alcohol oxidase crystals inside yeast cellsCited by: 22
Author(s): Arjen J. Jakobi, Daniel M. Passon, Kèvin Knoops, Francesco Stellato, Mao Liang, Thomas A. White, T. Seine, Marc Messerschmidt, Henry N. Chapman, Matthias Wilmanns
Software Mentions: 1
Published: almost 9 years ago
10.1107/S2052252517008193
Protein microcrystallography using synchrotron radiationCited by: 52
Author(s): Masaki Yamamoto, Kunio Hirata, Keitaro Yamashita, Kazuya Hasegawa, Go Ueno, Hideo Ago, Takashi Kumasaka
Software Mentions: 1
Published: over 7 years ago
10.1107/S2052252516001238
Whole-pattern fitting technique in serial femtosecond nanocrystallographyCited by: 4
Author(s): Ruben A. Dilanian, Sophie Williams, Andrew V. Martin, V.A. Streltsov, Harry M. Quiney
Software Mentions: 1
Published: almost 9 years ago
10.1107/S2052252521002177
Capturing structural changes of the S<sub>1</sub> to S<sub>2</sub> transition of photosystem II using time-resolved serial femtosecond crystallographyCited by: 17
Author(s): Hongjie Li, Yoshiki Nakajima, Takashi Nomura, Michihiro Sugahara, Shin Ichiro Yonekura, Siu Kit Chan, Takanori Nakane, Takahiro Yamane, Yasufumi Umena, Mamoru Suzuki, Tetsuya Masuda, Taiki Motomura, Hisashi Naitow, Yoshinori Matsuura, Tetsunari Kimura, Kensuke Tono, Shigeki Owada, Yasumasa Joti, Rie Tanaka, Eriko Nango, Fusamichi Akita, Minoru Kubo, So Iwata, Jian Ren Shen, Michihiro Suga
Software Mentions: 1
Published: over 3 years ago
10.1107/S2052252517014324
Analysis of XFEL serial diffraction data from individual crystalline fibrilsCited by: 16
Author(s): David H. Wojtas, Kartik Ayyer, Mao Liang, Estelle Mossou, Filippo Romoli, Carolin Seuring, Kenneth R. Beyerlein, Richard Bean, Andrew J. Morgan, D. Oberthüer, H. Fleckenstein, Michaël Heymann, Cornelius Gati, Oleksandr Yefanov, Miriam Barthelmeß, Eirini Ornithopoulou, Lorenzo Galli, P. Lourdu Xavier, Wai Li Ling, Matthias Frank, Chun Hong Yoon, Thomas A. White, Saša Bajt, Anna Mitraki, Sébastien Boutet, Andrew Aquila, Anton Barty, V. Trevor Forsyth, Henry N. Chapman, Rick P. Millane
Software Mentions: 1
Published: about 7 years ago
10.1107/S2052252513033939
Serial crystallography on<i>in vivo</i>grown microcrystals using synchrotron radiationCited by: 194
Author(s): Cornelius Gati, Gleb Bourenkov, Marco Klinge, Dirk Rehders, Francesco Stellato, Dominik Oberthür, Oleksandr Yefanov, Benjamin Sommer, Stefan Mogk, Michael Duszenko, Christian Betzel, Thomas R. Schneider, Henry N. Chapman, Lars Redecke
Software Mentions: 1
Published: almost 11 years ago
10.1107/S2052252518014951
<i>SPIND</i>: a reference-based auto-indexing algorithm for sparse serial crystallography dataCited by: 15
Author(s): Chufeng Li, Xuanxuan Li, Richard A. Kirian, John P. Spence, Haiguang Liu, Nadia A. Zatsepin
Software Mentions: 1
Published: almost 6 years ago
10.1107/S2052252514014900
Expression, purification and crystallization of CTB-MPR, a candidate mucosal vaccine component against HIV-1Cited by: 7
Author(s): Ho-Hsien Lee, Irene Cherni, Hualiang Yu, Raimund Fromme, Jeffrey D. Doran, Ingo Grotjohann, Michele Mittman, Shibom Basu, Arpan Deb, Katerina Dörner, Andrew Aquila, Anton Barty, Sébastien Boutet, Henry N. Chapman, R. Bruce Doak, Mark S. Hunter, Daniel James, Richard A. Kirian, Christopher Kupitz, Robert M. Lawrence, Haiguang Liu, Karol Nass, Ilme Schlichting, Kevin Schmidt, M. Seibert, Robert L. Shoeman, John C. H. Spence, Francesco Stellato, Uwe Weierstall, Garth J. Williams, Chunhong Yoon, Dingjie Wang, Nadia A. Zatsepin, Brenda G. Hogue, Nobuyuki Matoba, Petra Fromme, Tsafrir S. Mor
Software Mentions: 1
Published: over 10 years ago
10.1186/s10194-020-01174-7
Optogenetic stimulation of the motor cortex alleviates neuropathic pain in rats of infraorbital nerve injury with/without CGRP knock-downCited by: 9
Author(s): Jaisan Islam, Elina Kc, Beom-Seok Oh, Soochong Kim, Sang‐Hwan Hyun, Young Seok Park
Software Mentions: 1
Published: about 4 years ago
10.7554/eLife.37487
Manipulating midbrain dopamine neurons and reward-related behaviors with light-controllable nicotinic acetylcholine receptorsCited by: 41
Author(s): Romain Durand-de Cuttoli, Sarah Mondoloni, Fabio Marti, Damien Lemoine, Claire Nguyen, Jérémie Naudé, Thibaut d’Izarny-Gargas, Stéphanie Pons, Uwe Maskos, Dirk Trauner, Richard Krämer, Philippe Fauré, Alexandre Mourot
Software Mentions: 1
Published: about 6 years ago
10.7554/eLife.41896
Anatomical and physiological foundations of cerebello-hippocampal interactionCited by: 73
Author(s): Thomas C. Watson, Pauline Obiang, Arturo Torres-Herraez, Aurélie Watilliaux, Patrice Coulon, Christelle Rochefort, Laure Rondi-Reig
Software Mentions: 1
Published: over 5 years ago
10.7554/eLife.16572
Mesencephalic representations of recent experience influence decision makingCited by: 16
Author(s): John A. Thompson, Jamie D. Costabile, Gidon Felsen
Software Mentions: 1
Published: over 8 years ago
10.7554/eLife.33158
Glutamatergic drive along the septo-temporal axis of hippocampus boosts prelimbic oscillations in the neonatal mouseCited by: 36
Author(s): Joachim Ahlbeck, Lingzhen Song, Mattia Chini, Sebastian H. Bitzenhofer, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: over 6 years ago
10.7554/eLife.31543
Alterations of in vivo CA1 network activity in Dp(16)1Yey Down syndrome model miceCited by: 18
Author(s): Matthieu Raveau, Denis Polygalov, Roman Boehringer, Kenji Amano, Kazuhiro Yamakawa, Thomas J. McHugh
Software Mentions: 1
Published: over 6 years ago
10.7554/eLife.35450
Extinction recall of fear memories formed before stress is not affected despite higher theta activity in the amygdalaCited by: 10
Author(s): Mohammed Mostafizur Rahman, Ashutosh Shukla, Sumantra Chattarji
Software Mentions: 1
Published: over 6 years ago
10.7554/eLife.63352
Local circuit allowing hypothalamic control of hippocampal area CA2 activity and consequences for CA1Cited by: 16
Author(s): Valérie Robert, Ludivine Therreau, Vivien Chevaleyre, Eude Lepicard, Cécile Viollet, Julie Cognet, Arthur Huang, Roman Boehringer, Denis Polygalov, Thomas J. McHugh, Rebecca A. Piskorowski
Software Mentions: 1
Published: over 3 years ago
10.7554/eLife.51972
Spatiotemporal patterns of neocortical activity around hippocampal sharp-wave ripplesCited by: 80
Author(s): Javad Karimi Abadchi, Mojtaba Nazari-Ahangarkolaee, Sandra Gattas, Edgar Bermudez-Contreras, Artur Luczak, Bruce L. McNaughton, Majid H. Mohajerani
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms22168421
Stimulating GABAergic Neurons in the Nucleus Accumbens Core Alters the Trigeminal Neuropathic Pain Responses in a Rat Model of Infraorbital Nerve InjuryCited by: 7
Author(s): Jaisan Islam, Elina Kc, Soochong Kim, Hyong Kyu Kim, Young Seok Park
Software Mentions: 1
Published: over 3 years ago
10.1523/JNEUROSCI.2170-18.2018
Transient Knock-Down of Prefrontal DISC1 in Immune-Challenged Mice Causes Abnormal Long-Range Coupling and Cognitive Dysfunction throughout DevelopmentCited by: 22
Author(s): Xinfang Xu, Mattia Chini, Sebastian H. Bitzenhofer, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: almost 6 years ago
10.1016/j.jneumeth.2006.05.032
A novel electrode–pipette design for simultaneous recording of extracellular spikes and iontophoretic drug application in awake behaving monkeysCited by: 64
Author(s): Alexander Thiele, Louise Delicato, Mark Roberts, Mark A. Gieselmann
Software Mentions: 1
Published: almost 18 years ago
10.1523/ENEURO.0196-17.2017
Mediodorsal Thalamic Neurons Mirror the Activity of Medial Prefrontal Neurons Responding to Movement and Reinforcement during a Dynamic DNMTP TaskCited by: 14
Author(s): Rikki L.A. Miller, Miranda J. Francoeur, Brett M. Gibson, Robert G. Mair
Software Mentions: 1
Published: about 7 years ago
10.1523/ENEURO.0037-17.2017
Rate and Temporal Coding Convey Multisensory Information in Primary Sensory CorticesCited by: 32
Author(s): Malte Bieler, Kay Sieben, Nicole Cichon, Sandra Schildt, Brigitte Röder, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: over 7 years ago
10.7554/eLife.13833
Basal ganglia output reflects internally-specified movementsCited by: 9
Author(s): Mario J. Lintz, Gidon Felsen
Software Mentions: 1
Published: over 8 years ago
10.1186/s13041-015-0152-8
A video based feedback system for control of an active commutator during behavioral physiologyCited by: 1
Author(s): Mootaek Roh, Thomas J. McHugh, Kyungmin Lee
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pbio.2006994
Coordinated electrical activity in the olfactory bulb gates the oscillatory entrainment of entorhinal networks in neonatal miceCited by: 29
Author(s): Sabine Gretenkord, Johanna K. Kostka, Henrike Hartung, Katja Watznauer, David Fleck, Angélica Minier-Toribio, Marc Spehr, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0137413
Extracting the Behaviorally Relevant Stimulus: Unique Neural Representation of Farnesol, a Component of the Recruitment Pheromone of Bombus terrestrisCited by: 9
Author(s): Martin F. Strube‐Bloss, Austin Brown, Johannes Spaethe, Thomas Schmitt, Wolfgang Rößler
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0132630
Status Epilepticus Induced Spontaneous Dentate Gyrus Spikes: In Vivo Current Source Density AnalysisCited by: 6
Author(s): Sean P. Flynn, Sylvain J. Barriere, Rod C. Scott, Pierre-Pascal Lenck-Santini, Gregory L. Holmes
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0066327
Prolonged Ketamine Effects in Sp4 Hypomorphic Mice: Mimicking Phenotypes of SchizophreniaCited by: 24
Author(s): Baohu Ji, Xin Wang, António Pinto-Duarte, Minjung Kim, Sorana Caldwell, Jared W. Young, M. Margarita Behrens, Terrence J. Sejnowski, Mark A. Geyer, Xianjin Zhou
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0008218
A Wireless Brain-Machine Interface for Real-Time Speech SynthesisCited by: 237
Author(s): Frank H. Guenther, Jonathan S. Brumberg, Eve Wright, Alfonso Nieto-Castañón, Jason A. Tourville, Mikhail Panko, Robert Law, Steven A. Siebert, Jess Bartels, Dinal Andreasen, Princewill Ehirim, Hui Mao, Philip R. Kennedy
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0149019
Prefrontal Neurons Encode Actions and Outcomes in Conjunction with Spatial Location in Rats Performing a Dynamic Delayed Non-Match to Position TaskCited by: 12
Author(s): Kristen D. Onos, Miranda J. Francoeur, Benjamin A. Wormwood, Rikki L.A. Miller, Brett M. Gibson, Robert G. Mair
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0030699
Interactive Responses of a Thalamic Neuron to Formalin Induced Lasting Pain in Behaving MiceCited by: 23
Author(s): Yeowool Huh, Rushi Bhatt, Soo Hyun Park, Hee Sup Shin, Jeiwon Cho
Software Mentions: 1
Published: almost 13 years ago
10.1016/j.celrep.2016.01.061
Sharp-Wave Ripples Orchestrate the Induction of Synaptic Plasticity during Reactivation of Place Cell Firing Patterns in the HippocampusCited by: 120
Author(s): Josef H.L.P. Sadowski, Matthew W. Jones, Jack R. Mellor
Software Mentions: 1
Published: over 8 years ago
10.1093/cercor/bhab007
Contribution of Ionotropic Glutamatergic Receptors to Excitability and Attentional Signals in Macaque Frontal Eye FieldCited by: 4
Author(s): Miguel Dasilva, Christian Brandt, Marc Alwin Gieselmann, C. Distler, Alexander Thiele
Software Mentions: 1
Published: over 3 years ago
10.1038/s42003-021-02248-1
Inhibitory neurons in the superior colliculus mediate selection of spatially-directed movementsCited by: 18
Author(s): Jaclyn Essig, Joshua B Hunt, Gidon Felsen
Software Mentions: 1
Published: over 3 years ago
10.15252/embj.2019104150
Splice‐dependent trans‐synaptic <scp>PTP</scp> δ– <scp>IL</scp> 1 <scp>RAPL</scp> 1 interaction regulates synapse formation and non‐ <scp>REM</scp> sleepCited by: 17
Author(s): Haram Park, Yeonsoo Choi, Hwajin Jung, Seoyeong Kim, Suho Lee, Hyemin Han, Hanseul Kweon, Suwon Kang, Woong Seob Sim, Frank Koopmans, Esther Yang, Hyun Kim, August B. Smit, Yong Chul Bae, Eunjoon Kim
Software Mentions: 1
Published: over 4 years ago
10.1111/j.1460-9568.2011.07877.x
Stimulus-induced dissociation of neuronal firing rates and local field potential gamma power and its relationship to the blood oxygen level-dependent signal in macaque primary visual cortexCited by: 52
Author(s): Marcello Bartolo, M. A. Gieselmann, Vesna Vuksanović, David J. Hunter, Lijun Sun, Xing Chen, Louise Delicato, Alexander Thiele
Software Mentions: 1
Published: about 13 years ago
10.3389/fnbeh.2016.00123
Subthalamic and Cortical Local Field Potentials Associated with Pilocarpine-Induced Oral Tremor in the RatCited by: 3
Author(s): Lauren L. Long, Samantha J. Podurgiel, Aileen F. Haque, Emily L. Errante, James J. Chrobak, John D. Salamone
Software Mentions: 1
Published: over 8 years ago
10.3389/fnbeh.2013.00202
Dynamic NMDAR-mediated properties of place cells during the object place memory taskCited by: 11
Author(s): Thomas W. Faust, Sergio Robbiati, T. Huerta, Patricio T. Huerta
Software Mentions: 1
Published: almost 12 years ago
10.3389/fncel.2017.00239
Methodological Approach for Optogenetic Manipulation of Neonatal Neuronal NetworksCited by: 30
Author(s): Sebastian H. Bitzenhofer, Joachim Ahlbeck, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: over 7 years ago
10.3389/fnins.2015.00425
A novel versatile hybrid infusion-multielectrode recording (HIME) system for acute drug delivery and multisite acquisition of neuronal activity in freely moving miceCited by: 9
Author(s): Oleg Senkov, Andrey Mironov, Alexander Dityatev
Software Mentions: 1
Published: about 9 years ago
10.3389/fnins.2018.00771
Tapered Fibers Combined With a Multi-Electrode Array for Optogenetics in Mouse Medial Prefrontal CortexCited by: 33
Author(s): Leonardo Sileo, Sebastian H. Bitzenhofer, Barbara Spagnolo, Jastyn A. Pöpplau, Tobias Holzhammer, Ferruccio Pisanello, Filippo Pisano, Elisa Bellistri, Emanuela Maglie, Massimo De Vittorio, Patrick Ruther, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: about 6 years ago
10.3389/fphar.2018.01439
Acute Low Alcohol Disrupts Hippocampus-Striatum Neural Correlate of Learning Strategy by Inhibition of PKA/CREB Pathway in RatsCited by: 23
Author(s): Wei Sun, Xiaoliang Li, Changyuan Tang, An Liu
Software Mentions: 1
Published: almost 6 years ago
10.3389/fnsys.2019.00022
Unsupervised Temporal Contiguity Experience Does Not Break the Invariance of Orientation Selectivity Across Spatial FrequencyCited by: 3
Author(s): Els Crijns, Dzmitry A. Kaliukhovich, Lara Vankelecom, Hans Op de Beeck
Software Mentions: 1
Published: over 5 years ago
10.3389/fnsys.2018.00051
Persistent Valence Representations by Ensembles of Anterior Cingulate Cortex NeuronsCited by: 12
Author(s): Barak F. Caracheo, Jamie J. S. Grewal, Jeremy K. Seamans
Software Mentions: 1
Published: about 6 years ago
10.1107/S1600576716004751
Recent developments in <i>CrystFEL</i>Cited by: 216
Author(s): Thomas A. White, Valerio Mariani, Wolfgang Brehm, Oleksandr Yefanov, Anton Barty, Kenneth R. Beyerlein, Fedor Chervinskii, Lorenzo Galli, Cornelius Gati, Takanori Nakane, A. Tolstikova, Keitaro Yamashita, Chun Hong Yoon, Kay Diederichs, Henry N. Chapman
Software Mentions: 1
Published: over 8 years ago
10.1107/S1600576717007506
FELIX: an algorithm for indexing multiple crystallites in X-ray free-electron laser snapshot diffraction imagesCited by: 27
Author(s): Kenneth R. Beyerlein, Thomas A. White, Oleksandr Yefanov, Cornelius Gati, I.G. Kazantsev, Nicolai Fog-Gade Nielsen, Poul Scheel Larsen, Henry N. Chapman, Søren Schmidt
Software Mentions: 1
Published: over 7 years ago
10.1098/rsos.171785
Multimodal integration and stimulus categorization in putative mushroom body output neurons of the honeybeeCited by: 54
Author(s): Martin F. Strube‐Bloss, Wolfgang Rößler
Software Mentions: 1
Published: almost 7 years ago
10.1038/sdata.2016.21
X-ray laser diffraction for structure determination of the rhodopsin-arrestin complexCited by: 50
Author(s): Xin Zhou, Xiang Gao, Anton Barty, Ying Kang, Yuanzheng He, Wei Liu, Andrii Ishchenko, Thomas A. White, Oleksandr Yefanov, Gye Won Han, Qingping Xu, Parker W. de Waal, Kelly Suino-Powell, Sébastien Boutet, Garth J. Williams, Meitian Wang, Dianfan Li, Martin Caffrey, Henry N. Chapman, John C. H. Spence, Petra Fromme, Uwe Weierstall, Raymond C. Stevens, Vadim Cherezov, Karsten Melcher, Hao Xu
Software Mentions: 1
Published: over 8 years ago
10.1038/sdata.2016.60
Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laserCited by: 18
Author(s): Tomas Ekeberg, Martin Svenda, M. Seibert, Chantal Abergel, Filipe R. N. C. Maia, Virginie Seltzer, Daniel P. DePonte, Andrew Aquila, Jakob Andreasson, Bianca Iwan, Olof Jönsson, Daniel Westphal, Duško Odić, Inger Andersson, Anton Barty, Meng Liang, Andrew V. Martin, Lars Gumprecht, H. Fleckenstein, Saša Bajt, Miriam Barthelmeß, N. Coppola, Jean Claverie, N. Duane Loh, Christoph Bostedt, John D. Bozek, J. Krzywiński, Marc Messerschmidt, Michael J. Bogan, Christina Y. Hampton, Raymond G. Sierra, Matthias Frank, Robert L. Shoeman, Lukas Lomb, L. Foucar, Sascha W. Epp, Daniel Rolles, Artem Rudenko, R. Hartmann, Andreas Hartmann, Nils Kimmel, P. Holl, G. Weidenspointner, Benedikt Rudek, Benjamin Erk, Stephan Kassemeyer, Ilme Schlichting, L. Strüder, J. Ullrich, Carlo Schmidt, Faton Krasniqi, Günter Hauser, Christian Reich, H. Soltau, Sebastian Schorb, H. Hirsemann, C. Wunderer, H. Graafsma, Henry N. Chapman, János Hajdu
Software Mentions: 1
Published: over 8 years ago
10.1038/sdata.2016.57
Serial femtosecond crystallography datasets from G protein-coupled receptorsCited by: 9
Author(s): Thomas A. White, Anton Barty, Wei Liu, Andrii Ishchenko, Haitao Zhang, Cornelius Gati, Nadia A. Zatsepin, Shibom Basu, Dominik Oberthür, Markus Metz, Kenneth R. Beyerlein, Chun Hong Yoon, Oleksandr Yefanov, Daniel James, Dingjie Wang, Marc Messerschmidt, Jason E. Koglin, Sébastien Boutet, Uwe Weierstall, Vadim Cherezov
Software Mentions: 1
Published: over 8 years ago
10.1038/sdata.2016.61
A data set from flash X-ray imaging of carboxysomesCited by: 11
Author(s): Max F. Hantke, Dirk Hasse, Tomas Ekeberg, Katja John, Martin Svenda, N. Duane Loh, Andrew V. Martin, Nicuşor Tı̂mneanu, Daniel Larsson, Gijs van der Schot, Gunilla Carlsson, Margareta Ingelman, Jakob Andreasson, Daniel Westphal, Bianca Iwan, Charlotte Uetrecht, Johan Bielecki, Mao Liang, Francesco Stellato, Daniel P. DePonte, Sadia Bari, R. Hartmann, Nils Kimmel, Richard A. Kirian, M. Seibert, Kerstin Mühlig, Sebastian Schorb, Ken Ferguson, Christoph Bostedt, S. Carron, John D. Bozek, Daniel Rolles, Artem Rudenko, L. Foucar, Sascha W. Epp, Henry N. Chapman, Anton Barty, Inger Andersson, János Hajdu, Filipe R. N. C. Maia
Software Mentions: 1
Published: over 8 years ago
10.1038/sdata.2016.58
Open data set of live cyanobacterial cells imaged using an X-ray laserCited by: 7
Author(s): Gijs van der Schot, Martin Svenda, Filipe R. N. C. Maia, Max F. Hantke, Daniel P. DePonte, M. Seibert, Andrew Aquila, Joachim Schulz, Richard A. Kirian, Mao Liang, Francesco Stellato, Sadia Bari, Bianca Iwan, Jakob Andreasson, Nicuşor Tı̂mneanu, Johan Bielecki, Daniel Westphal, Francisca Nunes de Almeida, Duško Odić, Dirk Hasse, Gunilla Carlsson, Daniel Larsson, Anton Barty, Andrew V. Martin, Sebastian Schorb, Christoph Bostedt, John D. Bozek, S. Carron, Ken Ferguson, Daniel Rolles, Artem Rudenko, Sascha W. Epp, L. Foucar, Benedikt Rudek, Benjamin Erk, R. Hartmann, Nils Kimmel, P. Holl, Lars Englert, N. Duane Loh, Henry N. Chapman, Inger Andersson, János Hajdu, Tomas Ekeberg
Software Mentions: 1
Published: over 8 years ago
10.1038/sdata.2017.48
Diffraction data of core-shell nanoparticles from an X-ray free electron laserCited by: 4
Author(s): Xuanxuan Li, Chun Ya Chiu, Hsiang Ju Wang, Stephan Kassemeyer, Sabine Botha, Robert L. Shoeman, Robert M. Lawrence, Christopher Kupitz, Richard A. Kirian, Daniel James, DIngjie Wang, Garrett Nelson, Marc Messerschmidt, Sébastien Boutet, Garth J. Williams, Elisabeth Hartmann, Aliakbar Jafarpour, L. Foucar, Anton Barty, Henry N. Chapman, Mao Liang, Andreas Menzel, Fenglin Wang, Shibom Basu, Raimund Fromme, R. Bruce Doak, Petra Fromme, Uwe Weierstall, Michael H. Huang, John C. H. Spence, Ilme Schlichting, Brenda G. Hogue, Haiguang Liu
Software Mentions: 1
Published: over 7 years ago
10.1038/sdata.2017.55
Se-SAD serial femtosecond crystallography datasets from selenobiotinyl-streptavidinCited by: 6
Author(s): Chun Hong Yoon, Hasan DeMi̇rci̇, Raymond G. Sierra, E. Han Dao, Radman Ahmadi, Fulya Akşit, Andrew Aquila, A. Batyuk, Halilibrahim Çi̇ftçi̇, Serge Guillet, Matt J. Hayes, Brandon Hayes, Thomas J Lane, Meng Liang, Ulf Lundström, Jason E. Koglin, Paul Mgbam, Yashas Rao, Theodore Rendahl, Eduardo Tepichin Rodríguez, Lindsey Zhang, Soichi Wakatsuki, Sébastien Boutet, James M. Holton, Mark S. Hunter
Software Mentions: 1
Published: over 7 years ago