pypi: Cheetah | Projects | Ecosyste.ms: Papers

10.1107/S205979831801238X

Processing serial crystallography data with CrystFEL: a step-by-step guide
Cited by: 48
Author(s): Thomas A. White
Software Mentions: 5
Published: almost 6 years ago

10.1107/S1600576719005363

ClickX: a visualization-based program for preprocessing of serial crystallography data
Cited by: 4
Author(s): Xuanxuan Li, Chufeng Li, Haiguang Liu
Software Mentions: 4
Published: over 5 years ago

Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation
Cited by: 123
Author(s): José M. Martín-García, Chelsie E. Conrad, Garrett Nelson, Natasha Stander, Nadia A. Zatsepin, James Zook, Liya Zhu, James H. Geiger, Eugene Chun, David J. Kissick, Mark Hilgart, Craig M. Ogata, Andrii Ishchenko, Nirupa Nagaratnam, Shatabdi Roy-Chowdhury, Jesse Coe, Ganesh Subramanian, Alexander F. Schäffer, Daniel James, Gihan Ketwala, Nagarajan Venugopalan, Shenglan Xu, Stephen Corcoran, D.R. Ferguson, Uwe Weierstall, John C. H. Spence, Vadim Cherezov, Petra Fromme, Robert F. Fischetti, Wei Liu
Software Mentions: 3
Published: over 7 years ago

10.1038/sdata.2016.64

Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source
Cited by: 60
Author(s): Anna Munke, Jakob Andreasson, Andrew Aquila, Salah Awel, Kartik Ayyer, Anton Barty, Richard Bean, Peter Berntsen, Johan Bielecki, Sébastien Boutet, Maximilian Bucher, Henry N. Chapman, Benedikt J. Daurer, Hasan DeMi̇rci̇, Veit Elser, Petra Fromme, János Hajdu, Max F. Hantke, Akifumi Higashiura, Brenda G. Hogue, Ahmad Hosseinizadeh, Yoonhee Kim, Richard A. Kirian, Hemanth K. N. Reddy, Ti Yen Lan, Daniel Larsson, Haiguang Liu, N. Duane Loh, Filipe R. N. C. Maia, Adrian P. Mancuso, Kerstin Mühlig, Atsushi Nakagawa, Daewoong Nam, Garrett Nelson, Carl Nettelblad, Kenta Okamoto, A. Ourmazd, M. Franklin Rose, Gijs van der Schot, Peter Schwander, M. Seibert, Jonas A. Sellberg, Raymond G. Sierra, Changyong Song, Martin Svenda, Nicuşor Tı̂mneanu, Ivan A. Vartanyants, Daniel Westphal, Max O. Wiedorn, Garth J. Williams, P. Lourdu Xavier, Chun Hong Yoon, James Zook
Software Mentions: 3
Published: over 8 years ago

10.1107/S1600576720002423

Application of a high-throughput microcrystal delivery system to serial femtosecond crystallography
Cited by: 21
Author(s): Donghyeon Lee, Sehan Park, Keondo Lee, Jang Woo Kim, Gisu Park, Ki Hyun Nam, Sangwon Baek, Wan Kyun Chung, Jong‐Lam Lee, Yunje Cho, Jaehyun Park
Software Mentions: 3
Published: over 4 years ago

10.3389/fnins.2013.00074

Abrupt changes in the patterns and complexity of anterior cingulate cortex activity when food is introduced into an environment
Cited by: 14
Author(s): Barak F. Caracheo, Eldon Emberly, Shirin Hadizadeh, James M. Hyman, Jeremy K. Seamans
Software Mentions: 3
Published: almost 12 years ago

10.1107/S0907444913013620

Crystallographic data processing for free-electron laser sources
Cited by: 120
Author(s): Thomas A. White, Anton Barty, Francesco Stellato, James M. Holton, Richard A. Kirian, Nadia A. Zatsepin, Henry N. Chapman
Software Mentions: 3
Published: over 11 years ago

10.1107/S1600576714007626

Cheetah: software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction data
Cited by: 335
Author(s): Anton Barty, Richard A. Kirian, Filipe R. N. C. Maia, Max F. Hantke, Chun Hong Yoon, Thomas A. White, Henry N. Chapman
Software Mentions: 3
Published: over 10 years ago

10.1107/S1600576716005720

Data processing pipeline for serial femtosecond crystallography at SACLA
Cited by: 71
Author(s): Takanori Nakane, Yasumasa Joti, Kensuke Tono, Makina Yabashi, Eriko Nango, So Iwata, Ryuichiro Ishitani, Osamu Nureki
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-019-52825-y

A host dTMP-bound structure of T4 phage dCMP hydroxymethylase mutant using an X-ray free electron laser
Cited by: 2
Author(s): Si Hoon Park, Jaehyun Park, Sang Jae Lee, Woo Seok Yang, Sehan Park, Kyungdo Kim, Zee Yong Park, Hyun Kyu Song
Software Mentions: 3
Published: about 5 years ago

10.1107/S2052252519001854

Evaluation of the performance of classification algorithms for XFEL single-particle imaging data
Cited by: 36
Author(s): Yingchen Shi, Ke Yin, Xue–Cheng Tai, Hasan DeMi̇rci̇, Ahmad Hosseinizadeh, Brenda G. Hogue, Haoyuan Li, A. Ourmazd, Peter Schwander, Ivan A. Vartanyants, Chun Hong Yoon, Andrew Aquila, Haiguang Liu
Software Mentions: 3
Published: over 5 years ago

10.1107/S2052252518010047

Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging
Cited by: 39
Author(s): Ida Lundholm, Jonas A. Sellberg, Tomas Ekeberg, Max F. Hantke, Kenta Okamoto, Gijs van der Schot, Jakob Andreasson, Anton Barty, Johan Bielecki, Petr Brůža, Max Bucher, S. Carron, Benedikt J. Daurer, Ken Ferguson, Dirk Hasse, J. Krzywiński, Daniel Larsson, Andrew J. Morgan, Kerstin Mühlig, M. Müller, Carl Nettelblad, Alberto Pietrini, Hemanth K. N. Reddy, Daniela Rupp, Mario Sauppe, M. Marvin Seibert, Martin Svenda, Michelle Swiggers, Nicuşor Tı̂mneanu, Anatoli Ulmer, Daniel Westphal, Garth J. Williams, Alessandro Zani, G. Faigel, Henry N. Chapman, Thomas Möller, Christoph Bostedt, Jànos Hajdu, Tais Gorkhover, Filipe R. N. C. Maia
Software Mentions: 3
Published: about 6 years ago

10.1107/S1600576716004337

Facilitating model reconstruction for single-particle scattering using small-angle X-ray scattering methods
Cited by: 4
Author(s): Shuo Ma, Haiguang Liu
Software Mentions: 2
Published: over 8 years ago

10.3389/fncel.2018.00138

Inducible Knockout of the Cyclin-Dependent Kinase 5 Activator p35 Alters Hippocampal Spatial Coding and Neuronal Excitability
Cited by: 3
Author(s): Eriko Kamiki, Roman Boehringer, Denis Polygalov, Toshio Ohshima, Thomas J. McHugh
Software Mentions: 2
Published: over 6 years ago

10.1107/S2052252518014641

Structure-factor amplitude reconstruction from serial femtosecond crystallography of two-dimensional membrane-protein crystals
Cited by: 1
Author(s): Cecilia M. Casadei, Karol Nass, Anton Barty, Mark S. Hunter, Celestino Padeste, Ching‐Ju Tsai, Sébastien Boutet, Marc Messerschmidt, L. Sala, Garth J. Williams, D. Ozerov, Matthew A. Coleman, Xiao Dan Li, Matthias Frank, Bill Pedrini
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0220751

Low-cost solution for rodent home-cage behaviour monitoring
Cited by: 51
Author(s): Surjeet Singh, Edgar Bermudez-Contreras, Mojtaba Nazari, Robert J. Sutherland, Majid H. Mohajerani
Software Mentions: 2
Published: over 5 years ago

10.1107/S2053230X20006172

Enhanced X-ray diffraction of in vivo-grown μNS crystals by viscous jets at XFELs
Cited by: 5
Author(s): Nirupa Nagaratnam, Yanyang Tang, Sabine Botha, Justin M. Saul, Chufeng Li, Hao Hu, Sahba Zaare, Mark S. Hunter, David Lowry, Uwe Weierstall, Nadia A. Zatsepin, John C. H. Spence, Ji Qiu, Joshua LaBaer, Petra Fromme, José M. Martín-García
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.36275

Real-time classification of experience-related ensemble spiking patterns for closed-loop applications
Cited by: 26
Author(s): Davide Ciliberti, Frédéric Michon, Fabian Kloosterman
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-019-51876-5

Longitudinal Functional Assessment of Brain Injury Induced by High-Intensity Ultrasound Pulse Sequences
Cited by: 4
Author(s): Meijun Ye, Krystyna Solarana, Harmain Rafi, Shyama Patel, Marjan Nabili, Yunbo Liu, Stanley Huang, Joan M. Fisher, Victor Krauthamer, Matthew R. Myers, Cristin G. Welle
Software Mentions: 2
Published: about 5 years ago

10.1523/ENEURO.0424-18.2019

The Rat Medial Prefrontal Cortex Exhibits Flexible Neural Activity States during the Performance of an Odor Span Task
Cited by: 14
Author(s): Emanuela De Falco, An Liu, Ning Sun, Andrew J. Roebuck, Quentin Greba, Christopher C. Lapish
Software Mentions: 2
Published: over 5 years ago

10.1107/S2053273320001916

SPIND-TC: an indexing method for two-color X-ray diffraction data
Cited by: 2
Author(s): Xuanxuan Li, Chufeng Li, Haiguang Liu
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms20061401

Time-Resolved Macromolecular Crystallography at Pulsed X-ray Sources
Cited by: 38
Author(s): Marius Schmidt
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms20081943

Non-Cryogenic Structure and Dynamics of HIV-1 Integrase Catalytic Core Domain by X-ray Free-Electron Lasers
Cited by: 6
Author(s): Jae-Hyun Park, Ji-Hye Yun, Yingchen Shi, Jeong A. Han, Xuanxuan Li, Zeyu Jin, Tae-Hee Kim, Jaehyun Park, Sehan Park, Haiguang Liu, Weontae Lee
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21093332

Polysaccharide-Based Injection Matrix for Serial Crystallography
Cited by: 25
Author(s): Ki Hyun Nam
Software Mentions: 2
Published: over 4 years ago

10.1523/ENEURO.0023-18.2018

How Much Does Movement and Location Encoding Impact Prefrontal Cortex Activity? An Algorithmic Decoding Approach in Freely Moving Rats
Cited by: 9
Author(s): Adrian Lindsay, Barak F. Caracheo, Jamie J. S. Grewal, Daniel Leibovitz, Jeremy K. Seamans
Software Mentions: 2
Published: over 6 years ago

10.1107/S2052252517003591

Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses
Cited by: 60
Author(s): Benedikt J. Daurer, Kenta Okamoto, Johan Bielecki, Filipe R. N. C. Maia, Kerstin Mühlig, M. Marvin Seibert, Max F. Hantke, Carl Nettelblad, W. Henry Benner, Martin Svenda, Nicuşor Tı̂mneanu, Tomas Ekeberg, N. Duane Loh, Alberto Pietrini, Alessandro Zani, Asawari D. Rath, Daniel Westphal, Richard A. Kirian, Salah Awel, Max O. Wiedorn, Gijs van der Schot, Gunilla Carlsson, Dirk Hasse, Jonas A. Sellberg, Anton Barty, Jakob Andreasson, S. Boutet, Garth J. Williams, Jason E. Koglin, Inger Andersson, János Hajdu, Daniel Larsson
Software Mentions: 2
Published: over 7 years ago

10.1107/S2052252515013160

Serial femtosecond crystallography of soluble proteins in lipidic cubic phase
Cited by: 60
Author(s): Raimund Fromme, Andrii Ishchenko, Markus Metz, Shatabdi Roy Chowdhury, Shibom Basu, Sébastien Boutet, Petra Fromme, Thomas A. White, Anton Barty, John C. H. Spence, Uwe Weierstall, Wei Liu, Vadim Cherezov
Software Mentions: 2
Published: over 9 years ago

10.1107/S205225251402702X

Serial femtosecond crystallography: the first five years
Cited by: 259
Author(s): Ilme Schlichting
Software Mentions: 2
Published: almost 10 years ago

10.3389/fcell.2021.678182

Requirements of Postnatal proBDNF in the Hippocampus for Spatial Memory Consolidation and Neural Function
Cited by: 10
Author(s): Wei Sun, Hong Cheng, Yang Yang, Dongdong Tang, Xiaolian Li, An Liu
Software Mentions: 2
Published: over 3 years ago

10.1107/S1600576719012846

High-viscosity sample-injection device for serial femtosecond crystallography at atmospheric pressure
Cited by: 38
Author(s): Yoshiaki Shimazu, Kensuke Tono, Tomoyuki Tanaka, Y. Yamanaka, Takanori Nakane, Chihiro Mori, Kanako Kimura, Takaaki Fujiwara, Michihiro Sugahara, Rie Tanaka, R. Bruce Doak, Tatsuro Shimamura, So Iwata, Eriko Nango, Makina Yabashi
Software Mentions: 2
Published: about 5 years ago

10.3389/fnsys.2014.00004

Back to front: cerebellar connections and interactions with the prefrontal cortex
Cited by: 117
Author(s): Thomas C. Watson, Nadine Becker, Richard Apps, Matthew W. Jones
Software Mentions: 2
Published: almost 11 years ago

10.1107/S1600577518004873

A convolutional neural network-based screening tool for X-ray serial crystallography
Cited by: 36
Author(s): Tsung Wei Ke, Aaron S. Brewster, Stella X. Yu, Daniela Ushizima, Chao Yang, Nicholas K. Sauter
Software Mentions: 2
Published: over 6 years ago

10.1038/srep14964

Characterization of spatio-temporal epidural event-related potentials for mouse models of psychiatric disorders
Cited by: 4
Author(s): Xin Wang, António Pinto-Duarte, M. Margarita Behrens, Xianjin Zhou, Terrence J. Sejnowski
Software Mentions: 1
Published: about 9 years ago

10.1038/srep44628

Double-flow focused liquid injector for efficient serial femtosecond crystallography
Cited by: 86
Author(s): D. Oberthüer, J. Knoška, Max O. Wiedorn, Kenneth R. Beyerlein, David Bushnell, Elena G. Kovaleva, Michaël Heymann, Lars Gumprecht, Richard A. Kirian, Anton Barty, Valerio Mariani, A. Tolstikova, Luigi Adriano, Salah Awel, Miriam Barthelmeß, Katerina Dörner, P. Lourdu Xavier, Oleksandr Yefanov, Daniel James, Garrett Nelson, Dingjie Wang, George D. Calvey, Yujie Chen, Andrea Schmidt, Michael Szczepek, Stefan Frielingsdorf, Oliver Lenz, Edward H. Snell, Philip J. Robinson, Božidar Šarler, Grega Belšak, Marjan Maček, Fabian Wilde, Andrew Aquila, Sébastien Boutet, Mao Liang, Mark S. Hunter, Patrick Scheerer, John D. Lipscomb, Uwe Weierstall, Roger D. Kornberg, John C. H. Spence, Lois Pollack, Henry N. Chapman, Saša Bajt
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-04817-z

Serial femtosecond crystallography structure of cytochrome c oxidase at room temperature
Cited by: 32
Author(s): Rebecka Andersson, Cecilia Safari, Robert Dods, Eriko Nango, Rie Tanaka, A. Yamashita, Takanori Nakane, Kensuke Tono, Yasumasa Joti, Petra Båth, Elin Dunevall, Robert Bosman, Osamu Nureki, So Iwata, Richard Neutze, Gisela Brändén
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-33815-y

Multisensory integration in rodent tactile but not visual thalamus
Cited by: 23
Author(s): Malte Bieler, Xinfang Xu, Annette Marquardt, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: about 6 years ago

10.1107/S2052252515022927

In celluloserial crystallography of alcohol oxidase crystals inside yeast cells
Cited by: 22
Author(s): Arjen J. Jakobi, Daniel M. Passon, Kèvin Knoops, Francesco Stellato, Mao Liang, Thomas A. White, T. Seine, Marc Messerschmidt, Henry N. Chapman, Matthias Wilmanns
Software Mentions: 1
Published: almost 9 years ago

10.1107/S2052252517008193

Protein microcrystallography using synchrotron radiation
Cited by: 52
Author(s): Masaki Yamamoto, Kunio Hirata, Keitaro Yamashita, Kazuya Hasegawa, Go Ueno, Hideo Ago, Takashi Kumasaka
Software Mentions: 1
Published: over 7 years ago

10.1107/S2052252516001238

Whole-pattern fitting technique in serial femtosecond nanocrystallography
Cited by: 4
Author(s): Ruben A. Dilanian, Sophie Williams, Andrew V. Martin, V.A. Streltsov, Harry M. Quiney
Software Mentions: 1
Published: over 8 years ago

10.1107/S2052252521002177

Capturing structural changes of the S1 to S2 transition of photosystem II using time-resolved serial femtosecond crystallography
Cited by: 17
Author(s): Hongjie Li, Yoshiki Nakajima, Takashi Nomura, Michihiro Sugahara, Shin Ichiro Yonekura, Siu Kit Chan, Takanori Nakane, Takahiro Yamane, Yasufumi Umena, Mamoru Suzuki, Tetsuya Masuda, Taiki Motomura, Hisashi Naitow, Yoshinori Matsuura, Tetsunari Kimura, Kensuke Tono, Shigeki Owada, Yasumasa Joti, Rie Tanaka, Eriko Nango, Fusamichi Akita, Minoru Kubo, So Iwata, Jian Ren Shen, Michihiro Suga
Software Mentions: 1
Published: over 3 years ago

10.1107/S2052252517014324

Analysis of XFEL serial diffraction data from individual crystalline fibrils
Cited by: 16
Author(s): David H. Wojtas, Kartik Ayyer, Mao Liang, Estelle Mossou, Filippo Romoli, Carolin Seuring, Kenneth R. Beyerlein, Richard Bean, Andrew J. Morgan, D. Oberthüer, H. Fleckenstein, Michaël Heymann, Cornelius Gati, Oleksandr Yefanov, Miriam Barthelmeß, Eirini Ornithopoulou, Lorenzo Galli, P. Lourdu Xavier, Wai Li Ling, Matthias Frank, Chun Hong Yoon, Thomas A. White, Saša Bajt, Anna Mitraki, Sébastien Boutet, Andrew Aquila, Anton Barty, V. Trevor Forsyth, Henry N. Chapman, Rick P. Millane
Software Mentions: 1
Published: about 7 years ago

10.1107/S2052252513033939

Serial crystallography onin vivogrown microcrystals using synchrotron radiation
Cited by: 194
Author(s): Cornelius Gati, Gleb Bourenkov, Marco Klinge, Dirk Rehders, Francesco Stellato, Dominik Oberthür, Oleksandr Yefanov, Benjamin Sommer, Stefan Mogk, Michael Duszenko, Christian Betzel, Thomas R. Schneider, Henry N. Chapman, Lars Redecke
Software Mentions: 1
Published: over 10 years ago

10.1107/S2052252518014951

SPIND: a reference-based auto-indexing algorithm for sparse serial crystallography data
Cited by: 15
Author(s): Chufeng Li, Xuanxuan Li, Richard A. Kirian, John P. Spence, Haiguang Liu, Nadia A. Zatsepin
Software Mentions: 1
Published: almost 6 years ago

10.1107/S2052252514014900

Expression, purification and crystallization of CTB-MPR, a candidate mucosal vaccine component against HIV-1
Cited by: 7
Author(s): Ho-Hsien Lee, Irene Cherni, Hualiang Yu, Raimund Fromme, Jeffrey D. Doran, Ingo Grotjohann, Michele Mittman, Shibom Basu, Arpan Deb, Katerina Dörner, Andrew Aquila, Anton Barty, Sébastien Boutet, Henry N. Chapman, R. Bruce Doak, Mark S. Hunter, Daniel James, Richard A. Kirian, Christopher Kupitz, Robert M. Lawrence, Haiguang Liu, Karol Nass, Ilme Schlichting, Kevin Schmidt, M. Seibert, Robert L. Shoeman, John C. H. Spence, Francesco Stellato, Uwe Weierstall, Garth J. Williams, Chunhong Yoon, Dingjie Wang, Nadia A. Zatsepin, Brenda G. Hogue, Nobuyuki Matoba, Petra Fromme, Tsafrir S. Mor
Software Mentions: 1
Published: about 10 years ago

10.1186/s10194-020-01174-7

Optogenetic stimulation of the motor cortex alleviates neuropathic pain in rats of infraorbital nerve injury with/without CGRP knock-down
Cited by: 9
Author(s): Jaisan Islam, Elina Kc, Beom-Seok Oh, Soochong Kim, Sang‐Hwan Hyun, Young Seok Park
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.37487

Manipulating midbrain dopamine neurons and reward-related behaviors with light-controllable nicotinic acetylcholine receptors
Cited by: 41
Author(s): Romain Durand-de Cuttoli, Sarah Mondoloni, Fabio Marti, Damien Lemoine, Claire Nguyen, Jérémie Naudé, Thibaut d’Izarny-Gargas, Stéphanie Pons, Uwe Maskos, Dirk Trauner, Richard Krämer, Philippe Fauré, Alexandre Mourot
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.41896

Anatomical and physiological foundations of cerebello-hippocampal interaction
Cited by: 73
Author(s): Thomas C. Watson, Pauline Obiang, Arturo Torres-Herraez, Aurélie Watilliaux, Patrice Coulon, Christelle Rochefort, Laure Rondi-Reig
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.16572

Mesencephalic representations of recent experience influence decision making
Cited by: 16
Author(s): John A. Thompson, Jamie D. Costabile, Gidon Felsen
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.33158

Glutamatergic drive along the septo-temporal axis of hippocampus boosts prelimbic oscillations in the neonatal mouse
Cited by: 36
Author(s): Joachim Ahlbeck, Lingzhen Song, Mattia Chini, Sebastian H. Bitzenhofer, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.31543

Alterations of in vivo CA1 network activity in Dp(16)1Yey Down syndrome model mice
Cited by: 18
Author(s): Matthieu Raveau, Denis Polygalov, Roman Boehringer, Kenji Amano, Kazuhiro Yamakawa, Thomas J. McHugh
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.35450

Extinction recall of fear memories formed before stress is not affected despite higher theta activity in the amygdala
Cited by: 10
Author(s): Mohammed Mostafizur Rahman, Ashutosh Shukla, Sumantra Chattarji
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.63352

Local circuit allowing hypothalamic control of hippocampal area CA2 activity and consequences for CA1
Cited by: 16
Author(s): Valérie Robert, Ludivine Therreau, Vivien Chevaleyre, Eude Lepicard, Cécile Viollet, Julie Cognet, Arthur Huang, Roman Boehringer, Denis Polygalov, Thomas J. McHugh, Rebecca A. Piskorowski
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.51972

Spatiotemporal patterns of neocortical activity around hippocampal sharp-wave ripples
Cited by: 80
Author(s): Javad Karimi Abadchi, Mojtaba Nazari-Ahangarkolaee, Sandra Gattas, Edgar Bermudez-Contreras, Artur Luczak, Bruce L. McNaughton, Majid H. Mohajerani
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms22168421

Stimulating GABAergic Neurons in the Nucleus Accumbens Core Alters the Trigeminal Neuropathic Pain Responses in a Rat Model of Infraorbital Nerve Injury
Cited by: 7
Author(s): Jaisan Islam, Elina Kc, Soochong Kim, Hyong Kyu Kim, Young Seok Park
Software Mentions: 1
Published: over 3 years ago

10.1523/JNEUROSCI.2170-18.2018

Transient Knock-Down of Prefrontal DISC1 in Immune-Challenged Mice Causes Abnormal Long-Range Coupling and Cognitive Dysfunction throughout Development
Cited by: 22
Author(s): Xinfang Xu, Mattia Chini, Sebastian H. Bitzenhofer, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.jneumeth.2006.05.032

A novel electrode–pipette design for simultaneous recording of extracellular spikes and iontophoretic drug application in awake behaving monkeys
Cited by: 64
Author(s): Alexander Thiele, Louise Delicato, Mark Roberts, Mark A. Gieselmann
Software Mentions: 1
Published: almost 18 years ago

10.1523/ENEURO.0196-17.2017

Mediodorsal Thalamic Neurons Mirror the Activity of Medial Prefrontal Neurons Responding to Movement and Reinforcement during a Dynamic DNMTP Task
Cited by: 14
Author(s): Rikki L.A. Miller, Miranda J. Francoeur, Brett M. Gibson, Robert G. Mair
Software Mentions: 1
Published: about 7 years ago

10.1523/ENEURO.0037-17.2017

Rate and Temporal Coding Convey Multisensory Information in Primary Sensory Cortices
Cited by: 32
Author(s): Malte Bieler, Kay Sieben, Nicole Cichon, Sandra Schildt, Brigitte Röder, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.13833

Basal ganglia output reflects internally-specified movements
Cited by: 9
Author(s): Mario J. Lintz, Gidon Felsen
Software Mentions: 1
Published: over 8 years ago

10.1186/s13041-015-0152-8

A video based feedback system for control of an active commutator during behavioral physiology
Cited by: 1
Author(s): Mootaek Roh, Thomas J. McHugh, Kyungmin Lee
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pbio.2006994

Coordinated electrical activity in the olfactory bulb gates the oscillatory entrainment of entorhinal networks in neonatal mice
Cited by: 29
Author(s): Sabine Gretenkord, Johanna K. Kostka, Henrike Hartung, Katja Watznauer, David Fleck, Angélica Minier-Toribio, Marc Spehr, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0137413

Extracting the Behaviorally Relevant Stimulus: Unique Neural Representation of Farnesol, a Component of the Recruitment Pheromone of Bombus terrestris
Cited by: 9
Author(s): Martin F. Strube‐Bloss, Austin Brown, Johannes Spaethe, Thomas Schmitt, Wolfgang Rößler
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0132630

Status Epilepticus Induced Spontaneous Dentate Gyrus Spikes: In Vivo Current Source Density Analysis
Cited by: 6
Author(s): Sean P. Flynn, Sylvain J. Barriere, Rod C. Scott, Pierre-Pascal Lenck-Santini, Gregory L. Holmes
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0066327

Prolonged Ketamine Effects in Sp4 Hypomorphic Mice: Mimicking Phenotypes of Schizophrenia
Cited by: 24
Author(s): Baohu Ji, Xin Wang, António Pinto-Duarte, Minjung Kim, Sorana Caldwell, Jared W. Young, M. Margarita Behrens, Terrence J. Sejnowski, Mark A. Geyer, Xianjin Zhou
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0008218

A Wireless Brain-Machine Interface for Real-Time Speech Synthesis
Cited by: 237
Author(s): Frank H. Guenther, Jonathan S. Brumberg, Eve Wright, Alfonso Nieto-Castañón, Jason A. Tourville, Mikhail Panko, Robert Law, Steven A. Siebert, Jess Bartels, Dinal Andreasen, Princewill Ehirim, Hui Mao, Philip R. Kennedy
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0149019

Prefrontal Neurons Encode Actions and Outcomes in Conjunction with Spatial Location in Rats Performing a Dynamic Delayed Non-Match to Position Task
Cited by: 12
Author(s): Kristen D. Onos, Miranda J. Francoeur, Benjamin A. Wormwood, Rikki L.A. Miller, Brett M. Gibson, Robert G. Mair
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0030699

Interactive Responses of a Thalamic Neuron to Formalin Induced Lasting Pain in Behaving Mice
Cited by: 23
Author(s): Yeowool Huh, Rushi Bhatt, Soo Hyun Park, Hee Sup Shin, Jeiwon Cho
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.celrep.2016.01.061

Sharp-Wave Ripples Orchestrate the Induction of Synaptic Plasticity during Reactivation of Place Cell Firing Patterns in the Hippocampus
Cited by: 120
Author(s): Josef H.L.P. Sadowski, Matthew W. Jones, Jack R. Mellor
Software Mentions: 1
Published: over 8 years ago

10.1093/cercor/bhab007

Contribution of Ionotropic Glutamatergic Receptors to Excitability and Attentional Signals in Macaque Frontal Eye Field
Cited by: 4
Author(s): Miguel Dasilva, Christian Brandt, Marc Alwin Gieselmann, C. Distler, Alexander Thiele
Software Mentions: 1
Published: over 3 years ago

10.1038/s42003-021-02248-1

Inhibitory neurons in the superior colliculus mediate selection of spatially-directed movements
Cited by: 18
Author(s): Jaclyn Essig, Joshua B Hunt, Gidon Felsen
Software Mentions: 1
Published: over 3 years ago

10.15252/embj.2019104150

Splice‐dependent trans‐synaptic <scp>PTP</scp> δ– <scp>IL</scp> 1 <scp>RAPL</scp> 1 interaction regulates synapse formation and non‐ <scp>REM</scp> sleep
Cited by: 17
Author(s): Haram Park, Yeonsoo Choi, Hwajin Jung, Seoyeong Kim, Suho Lee, Hyemin Han, Hanseul Kweon, Suwon Kang, Woong Seob Sim, Frank Koopmans, Esther Yang, Hyun Kim, August B. Smit, Yong Chul Bae, Eunjoon Kim
Software Mentions: 1
Published: over 4 years ago

10.1111/j.1460-9568.2011.07877.x

Stimulus-induced dissociation of neuronal firing rates and local field potential gamma power and its relationship to the blood oxygen level-dependent signal in macaque primary visual cortex
Cited by: 52
Author(s): Marcello Bartolo, M. A. Gieselmann, Vesna Vuksanović, David J. Hunter, Lijun Sun, Xing Chen, Louise Delicato, Alexander Thiele
Software Mentions: 1
Published: almost 13 years ago

10.3389/fnbeh.2016.00123

Subthalamic and Cortical Local Field Potentials Associated with Pilocarpine-Induced Oral Tremor in the Rat
Cited by: 3
Author(s): Lauren L. Long, Samantha J. Podurgiel, Aileen F. Haque, Emily L. Errante, James J. Chrobak, John D. Salamone
Software Mentions: 1
Published: over 8 years ago

10.3389/fnbeh.2013.00202

Dynamic NMDAR-mediated properties of place cells during the object place memory task
Cited by: 11
Author(s): Thomas W. Faust, Sergio Robbiati, T. Huerta, Patricio T. Huerta
Software Mentions: 1
Published: almost 12 years ago

10.3389/fncel.2017.00239

Methodological Approach for Optogenetic Manipulation of Neonatal Neuronal Networks
Cited by: 30
Author(s): Sebastian H. Bitzenhofer, Joachim Ahlbeck, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: about 7 years ago

10.3389/fnins.2015.00425

A novel versatile hybrid infusion-multielectrode recording (HIME) system for acute drug delivery and multisite acquisition of neuronal activity in freely moving mice
Cited by: 9
Author(s): Oleg Senkov, Andrey Mironov, Alexander Dityatev
Software Mentions: 1
Published: about 9 years ago

10.3389/fnins.2018.00771

Tapered Fibers Combined With a Multi-Electrode Array for Optogenetics in Mouse Medial Prefrontal Cortex
Cited by: 33
Author(s): Leonardo Sileo, Sebastian H. Bitzenhofer, Barbara Spagnolo, Jastyn A. Pöpplau, Tobias Holzhammer, Ferruccio Pisanello, Filippo Pisano, Elisa Bellistri, Emanuela Maglie, Massimo De Vittorio, Patrick Ruther, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2018.01439

Acute Low Alcohol Disrupts Hippocampus-Striatum Neural Correlate of Learning Strategy by Inhibition of PKA/CREB Pathway in Rats
Cited by: 23
Author(s): Wei Sun, Xiaoliang Li, Changyuan Tang, An Liu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnsys.2019.00022

Unsupervised Temporal Contiguity Experience Does Not Break the Invariance of Orientation Selectivity Across Spatial Frequency
Cited by: 3
Author(s): Els Crijns, Dzmitry A. Kaliukhovich, Lara Vankelecom, Hans Op de Beeck
Software Mentions: 1
Published: over 5 years ago

10.3389/fnsys.2018.00051

Persistent Valence Representations by Ensembles of Anterior Cingulate Cortex Neurons
Cited by: 12
Author(s): Barak F. Caracheo, Jamie J. S. Grewal, Jeremy K. Seamans
Software Mentions: 1
Published: about 6 years ago

10.1107/S1600576716004751

Recent developments in CrystFEL
Cited by: 216
Author(s): Thomas A. White, Valerio Mariani, Wolfgang Brehm, Oleksandr Yefanov, Anton Barty, Kenneth R. Beyerlein, Fedor Chervinskii, Lorenzo Galli, Cornelius Gati, Takanori Nakane, A. Tolstikova, Keitaro Yamashita, Chun Hong Yoon, Kay Diederichs, Henry N. Chapman
Software Mentions: 1
Published: over 8 years ago

10.1107/S1600576717007506

FELIX: an algorithm for indexing multiple crystallites in X-ray free-electron laser snapshot diffraction images
Cited by: 27
Author(s): Kenneth R. Beyerlein, Thomas A. White, Oleksandr Yefanov, Cornelius Gati, I.G. Kazantsev, Nicolai Fog-Gade Nielsen, Poul Scheel Larsen, Henry N. Chapman, Søren Schmidt
Software Mentions: 1
Published: over 7 years ago

10.1098/rsos.171785

Multimodal integration and stimulus categorization in putative mushroom body output neurons of the honeybee
Cited by: 54
Author(s): Martin F. Strube‐Bloss, Wolfgang Rößler
Software Mentions: 1
Published: almost 7 years ago

10.1038/sdata.2016.21

X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex
Cited by: 50
Author(s): Xin Zhou, Xiang Gao, Anton Barty, Ying Kang, Yuanzheng He, Wei Liu, Andrii Ishchenko, Thomas A. White, Oleksandr Yefanov, Gye Won Han, Qingping Xu, Parker W. de Waal, Kelly Suino-Powell, Sébastien Boutet, Garth J. Williams, Meitian Wang, Dianfan Li, Martin Caffrey, Henry N. Chapman, John C. H. Spence, Petra Fromme, Uwe Weierstall, Raymond C. Stevens, Vadim Cherezov, Karsten Melcher, Hao Xu
Software Mentions: 1
Published: over 8 years ago

10.1038/sdata.2016.60

Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser
Cited by: 18
Author(s): Tomas Ekeberg, Martin Svenda, M. Seibert, Chantal Abergel, Filipe R. N. C. Maia, Virginie Seltzer, Daniel P. DePonte, Andrew Aquila, Jakob Andreasson, Bianca Iwan, Olof Jönsson, Daniel Westphal, Duško Odić, Inger Andersson, Anton Barty, Meng Liang, Andrew V. Martin, Lars Gumprecht, H. Fleckenstein, Saša Bajt, Miriam Barthelmeß, N. Coppola, Jean Claverie, N. Duane Loh, Christoph Bostedt, John D. Bozek, J. Krzywiński, Marc Messerschmidt, Michael J. Bogan, Christina Y. Hampton, Raymond G. Sierra, Matthias Frank, Robert L. Shoeman, Lukas Lomb, L. Foucar, Sascha W. Epp, Daniel Rolles, Artem Rudenko, R. Hartmann, Andreas Hartmann, Nils Kimmel, P. Holl, G. Weidenspointner, Benedikt Rudek, Benjamin Erk, Stephan Kassemeyer, Ilme Schlichting, L. Strüder, J. Ullrich, Carlo Schmidt, Faton Krasniqi, Günter Hauser, Christian Reich, H. Soltau, Sebastian Schorb, H. Hirsemann, C. Wunderer, H. Graafsma, Henry N. Chapman, János Hajdu
Software Mentions: 1
Published: over 8 years ago

10.1038/sdata.2016.57

Serial femtosecond crystallography datasets from G protein-coupled receptors
Cited by: 9
Author(s): Thomas A. White, Anton Barty, Wei Liu, Andrii Ishchenko, Haitao Zhang, Cornelius Gati, Nadia A. Zatsepin, Shibom Basu, Dominik Oberthür, Markus Metz, Kenneth R. Beyerlein, Chun Hong Yoon, Oleksandr Yefanov, Daniel James, Dingjie Wang, Marc Messerschmidt, Jason E. Koglin, Sébastien Boutet, Uwe Weierstall, Vadim Cherezov
Software Mentions: 1
Published: over 8 years ago

10.1038/sdata.2016.61

A data set from flash X-ray imaging of carboxysomes
Cited by: 11
Author(s): Max F. Hantke, Dirk Hasse, Tomas Ekeberg, Katja John, Martin Svenda, N. Duane Loh, Andrew V. Martin, Nicuşor Tı̂mneanu, Daniel Larsson, Gijs van der Schot, Gunilla Carlsson, Margareta Ingelman, Jakob Andreasson, Daniel Westphal, Bianca Iwan, Charlotte Uetrecht, Johan Bielecki, Mao Liang, Francesco Stellato, Daniel P. DePonte, Sadia Bari, R. Hartmann, Nils Kimmel, Richard A. Kirian, M. Seibert, Kerstin Mühlig, Sebastian Schorb, Ken Ferguson, Christoph Bostedt, S. Carron, John D. Bozek, Daniel Rolles, Artem Rudenko, L. Foucar, Sascha W. Epp, Henry N. Chapman, Anton Barty, Inger Andersson, János Hajdu, Filipe R. N. C. Maia
Software Mentions: 1
Published: over 8 years ago

10.1038/sdata.2016.58

Open data set of live cyanobacterial cells imaged using an X-ray laser
Cited by: 7
Author(s): Gijs van der Schot, Martin Svenda, Filipe R. N. C. Maia, Max F. Hantke, Daniel P. DePonte, M. Seibert, Andrew Aquila, Joachim Schulz, Richard A. Kirian, Mao Liang, Francesco Stellato, Sadia Bari, Bianca Iwan, Jakob Andreasson, Nicuşor Tı̂mneanu, Johan Bielecki, Daniel Westphal, Francisca Nunes de Almeida, Duško Odić, Dirk Hasse, Gunilla Carlsson, Daniel Larsson, Anton Barty, Andrew V. Martin, Sebastian Schorb, Christoph Bostedt, John D. Bozek, S. Carron, Ken Ferguson, Daniel Rolles, Artem Rudenko, Sascha W. Epp, L. Foucar, Benedikt Rudek, Benjamin Erk, R. Hartmann, Nils Kimmel, P. Holl, Lars Englert, N. Duane Loh, Henry N. Chapman, Inger Andersson, János Hajdu, Tomas Ekeberg
Software Mentions: 1
Published: over 8 years ago

10.1038/sdata.2017.48

Diffraction data of core-shell nanoparticles from an X-ray free electron laser
Cited by: 4
Author(s): Xuanxuan Li, Chun Ya Chiu, Hsiang Ju Wang, Stephan Kassemeyer, Sabine Botha, Robert L. Shoeman, Robert M. Lawrence, Christopher Kupitz, Richard A. Kirian, Daniel James, DIngjie Wang, Garrett Nelson, Marc Messerschmidt, Sébastien Boutet, Garth J. Williams, Elisabeth Hartmann, Aliakbar Jafarpour, L. Foucar, Anton Barty, Henry N. Chapman, Mao Liang, Andreas Menzel, Fenglin Wang, Shibom Basu, Raimund Fromme, R. Bruce Doak, Petra Fromme, Uwe Weierstall, Michael H. Huang, John C. H. Spence, Ilme Schlichting, Brenda G. Hogue, Haiguang Liu
Software Mentions: 1
Published: over 7 years ago

10.1038/sdata.2017.55

Se-SAD serial femtosecond crystallography datasets from selenobiotinyl-streptavidin
Cited by: 6
Author(s): Chun Hong Yoon, Hasan DeMi̇rci̇, Raymond G. Sierra, E. Han Dao, Radman Ahmadi, Fulya Akşit, Andrew Aquila, A. Batyuk, Halilibrahim Çi̇ftçi̇, Serge Guillet, Matt J. Hayes, Brandon Hayes, Thomas J Lane, Meng Liang, Ulf Lundström, Jason E. Koglin, Paul Mgbam, Yashas Rao, Theodore Rendahl, Eduardo Tepichin Rodríguez, Lindsey Zhang, Soichi Wakatsuki, Sébastien Boutet, James M. Holton, Mark S. Hunter
Software Mentions: 1
Published: over 7 years ago

Projects: pypi: Cheetah

Papers Mentioning Cheetah 90