Ecosyste.ms: Papers

10.1186/s12879-015-0786-2

Identification of circulating biomarkers in sera of Plasmodium knowlesi-infected malaria patients – comparison against Plasmodium vivax infection
Cited by: 15
Author(s): Yeng Chen, Choon Kit Chan, Jesinda P Kerishnan, Yee Ling Lau, Yin-Ling Irene Wong, Subash C. B. Gopinath
Software Mentions: 6
Published: almost 10 years ago

10.1186/s12935-021-01829-8

Identification of key genes involved in tumor immune cell infiltration and cetuximab resistance in colorectal cancer
Cited by: 4
Author(s): Li Liang, Mengling Liu, Xun Sun, Yunfeng Yuan, Ke Peng, Khalid Rashid, Yiyi Yu, Yuehong Cui, Yanjie Chen, Tianshu Liu
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pgen.1008900

A novel allele of ASY3 is associated with greater meiotic stability in autotetraploid Arabidopsis lyrata
Cited by: 25
Author(s): Paul J. Seear, Catherine L. Gregory, Darren Heavens, Roswitha Schmickl, Levi Yant, James D. Higgins
Software Mentions: 4
Published: over 4 years ago

10.1016/j.comtox.2017.10.001

Ab initio chemical safety assessment: A workflow based on exposure considerations and non-animal methods
Cited by: 64
Author(s): Elisabet Berggren, Andrew White, Gladys Ouédraogo, Alicia Paini, Andrea-Nicole Richarz, Frédéric Bois, Thomas E. Exner, Sofia B. Leite, Leo A. van Grunsven, Andrew Worth, Catherine Mahony
Software Mentions: 4
Published: about 7 years ago

10.1186/1756-8935-7-26

Protection of CpG islands against de novo DNA methylation during oogenesis is associated with the recognition site of E2f1 and E2f2
Cited by: 23
Author(s): Heba Saadeh, Reiner Schulz
Software Mentions: 4
Published: about 10 years ago

10.3390/s21051794

Multi-U-Net: Residual Module under Multisensory Field and Attention Mechanism Based Optimized U-Net for VHR Image Semantic Segmentation
Cited by: 6
Author(s): Si Ran, Jianli Ding, Bohua Liu, Xiangyu Ge, Guolin Ma
Software Mentions: 4
Published: over 3 years ago

10.1186/s12864-015-1233-x

Sequence and analysis of a whole genome from Kuwaiti population subgroup of Persian ancestry
Cited by: 27
Author(s): Gaurav Thareja, Sumi Elsa John, Prashantha Hebbar, Kazem Behbehani, Thangavel Alphonse Thanaraj, Osama Alsmadi
Software Mentions: 4
Published: almost 10 years ago

10.1002/ece3.5656

To remain or leave: Dispersal variation and its genetic consequences in benthic freshwater invertebrates
Cited by: 2
Author(s): Paolo Ruggeri, Ellen Pasternak, Beth Okamura
Software Mentions: 3
Published: about 5 years ago

10.1186/1471-2164-13-552

MicroRNAs and cardiac sarcoplasmic reticulum calcium ATPase-2 in human myocardial infarction: expression and bioinformatic analysis
Cited by: 52
Author(s): Emanuela Boštjančič, Nina Zidar, Damjan Glavač
Software Mentions: 3
Published: about 12 years ago

10.1371/journal.pone.0165412

Remarkable Diversity and Prevalence of Dagger Nematodes of the Genus Xiphinema Cobb, 1913 (Nematoda: Longidoridae) in Olives Revealed by Integrative Approaches
Cited by: 19
Author(s): Antonio Archidona‐Yuste, Juan A Navas‐Cortés, Carolina Cantalapiedra‐Navarrete, Juan E. Palomares-Rius, Pablo Castillo
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0198236

Diversity of root-knot nematodes of the genus Meloidogyne Göeldi, 1892 (Nematoda: Meloidogynidae) associated with olive plants and environmental cues regarding their distribution in southern Spain
Cited by: 26
Author(s): Antonio Archidona‐Yuste, Carolina Cantalapiedra‐Navarrete, Gracia Liébanas, Hava F. Rapoport, Pablo Castillo, Juan E. Palomares-Rius
Software Mentions: 3
Published: over 6 years ago

10.1155/2013/185282

Elucidation of Novel Structural Scaffold in Rohu TLR2 and Its Binding Site Analysis with Peptidoglycan, Lipoteichoic Acid and Zymosan Ligands, and Downstream MyD88 Adaptor Protein
Cited by: 20
Author(s): Bikash R. Sahoo, Madhubanti Basu, Bichitrananda Swain, Manas Ranjan Dikhit, P. Jayasankar, Mrinal Samanta
Software Mentions: 3
Published: almost 12 years ago

10.3390/v13061002

The Spike of Concern—The Novel Variants of SARS-CoV-2
Cited by: 84
Author(s): Anna Winger, Thomas Caspari
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1004480

A Virtual Mixture Approach to the Study of Multistate Equilibrium: Application to Constant pH Simulation in Explicit Water
Cited by: 14
Author(s): Xiongwu Wu, Bernard R. Brooks
Software Mentions: 2
Published: about 9 years ago

10.1186/1476-069X-8-26

Particulate air pollution and chronic ischemic heart disease in the eastern United States: a county level ecological study using satellite aerosol data
Cited by: 61
Author(s): Zhiyong Hu, K. Ranga Rao
Software Mentions: 2
Published: over 15 years ago

10.1289/ehp.1409342

Chemical Safety Assessment Using Read-Across: Assessing the Use of Novel Testing Methods to Strengthen the Evidence Base for Decision Making
Cited by: 83
Author(s): Elisabet Berggren, Patric Amcoff, Romualdo Benigni, Karen Blackburn, Edward W. Carney, Mark T.D. Cronin, Hubert Deluyker, F. Gautier, Richard S. Judson, Georges Kass, Detlef Keller, Derek J. Knight, Werner Lilienblum, Catherine Mahony, Ivan Rusyn, T.W. Schultz, Michael Schwarz, Gerrit Schüürmann, Andrew White, J. S. Burton, Alfonso Lostia, Sharon Munn, Andrew Worth
Software Mentions: 2
Published: almost 9 years ago

10.1155/2021/8263829

Integrative Analyses of Genes Associated with Hashimoto’s Thyroiditis
Cited by: 7
Author(s): Kangli Qiu, Kai Li, Tianshu Zeng, Yunfei Liao, Jie Min, Nan Zhang, Miaomiao Peng, Wen Kong, Lulu Chen
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pntd.0002693

Molecular, Immunological, and Biological Characterization of Tityus serrulatus Venom Hyaluronidase: New Insights into Its Role in Envenomation
Cited by: 50
Author(s): Carolina Campolina Rebello Horta, Bárbara de Freitas Magalhães, Bárbara Bruna Ribeiro Oliveira-Mendes, Anderson Oliveira do Carmo, Clara Guerra-Duarte, Liza Felicori, Ricardo Andrez Machado-de-Ávila, Carlos Chávez-Olórtegui, Evanguedes Kalapothakis
Software Mentions: 2
Published: almost 11 years ago

10.3390/ijms19082275

Antibacterial Mechanism of Gloverin2 from Silkworm, Bombyx mori
Cited by: 10
Author(s): Qian Wang, Pengchao Guo, Zhan Wang, Huawei Liu, Yunshi Zhang, Shan Jiang, Wenzhe Han, Qingyou Xia, Ping Zhao
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-7-250

The SNARE protein family of Leishmania major
Cited by: 37
Author(s): Sébastien Besteiro, Graham H. Coombs, Jeremy C. Mottram
Software Mentions: 2
Published: about 18 years ago

10.1371/journal.pone.0240321

Prognostic and clinicopathological significance of long noncoding RNA MALAT-1 expression in patients with non-small cell lung cancer: A meta-analysis
Cited by: 7
Author(s): Xiaoli Liu, Guichuan Huang, Jing Zhang, Longju Zhang, Zongan Liang
Software Mentions: 2
Published: about 4 years ago

10.1186/s12903-021-01757-z

Periodontal status and chronic obstructive pulmonary disease (COPD) exacerbations: a systematic review
Cited by: 14
Author(s): Niamh Kelly, Lewis Winning, Christopher Irwin, Fionnuala T. Lundy, Dermot Linden, Lorcan McGarvey, Gerard Linden, Ikhlas El Karim
Software Mentions: 2
Published: about 3 years ago

10.1186/1471-2148-14-19

Integrated shotgun sequencing and bioinformatics pipeline allows ultra-fast mitogenome recovery and confirms substantial gene rearrangements in Australian freshwater crayfishes
Cited by: 85
Author(s): Han Ming Gan, Mark B. Schultz, Christopher M. Austin
Software Mentions: 2
Published: almost 11 years ago

10.1186/ar2145

The identification and characterization of a novel protein, c19orf10, in the synovium
Cited by: 20
Author(s): Tracey Weiler, Qiujiang Du, Oleg V. Krokhin, Werner Ens, K. G. Standing, Hani El-Gabalawy, John A. Wilkins
Software Mentions: 2
Published: almost 18 years ago

10.1186/1471-2164-15-843

In silico analysis of the core signaling proteome from the barley powdery mildew pathogen (Blumeria graminis f.sp. hordei)
Cited by: 32
Author(s): Stefan Kusch, Nahal Ahmadinejad, Ralph Panstruga, Harald Kühn
Software Mentions: 2
Published: about 10 years ago

10.1093/jxb/eraa489

A small secreted protein from <i>Zymoseptoria tritici</i> interacts with a wheat E3 ubiquitin ligase to promote disease
Cited by: 9
Author(s): Sujit Jung Karki, Aisling Reilly, Binbin Zhou, Maurizio Mascarello, John R. Burke, Fiona M. Doohan, Dimitar Douchkov, Patrick Schweizer, Angela Feechan
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2164-5-85

Functional characterization in Caenorhabditis elegans of transmembrane worm-human orthologs
Cited by: 16
Author(s): Anna Henricson, Erik L. L. Sonnhammer, David L. Baillie, Ana Vaz Gomes
Software Mentions: 2
Published: about 20 years ago

10.3390/atmos11020209

Contribution of Satellite-Derived Aerosol Optical Depth PM2.5 Bayesian Concentration Surfaces to Respiratory-Cardiovascular Chronic Disease Hospitalizations in Baltimore, Maryland
Cited by: 6
Author(s): John T. Braggio, Eric S. Hall, Stephanie Weber, Amy K. Huff
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12859-016-0945-5

Characterization of multiple sequence alignment errors using complete-likelihood score and position-shift map
Cited by: 7
Author(s): Kiyoshi Ezawa
Software Mentions: 2
Published: over 8 years ago

10.3390/v9050115

Label-Free Quantitative Proteomic Analysis of Chitosan Oligosaccharide-Treated Rice Infected with Southern Rice Black-Streaked Dwarf Virus
Cited by: 70
Author(s): Anne Yuqing Yang, Lu Yu, Zhuo Chen, Shanxue Zhang, Jing Shi, Xiaozhen Zhao, Yuanyou Yang, Deyu Hu, Baoan Song
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0092636

In-Silico Analysis of Binding Site Features and Substrate Selectivity in Plant Flavonoid-3-O Glycosyltransferases (F3GT) through Molecular Modeling, Docking and Dynamics Simulation Studies
Cited by: 12
Author(s): Ranu Sharma, Priyabrata Panigrahi, C.G. Suresh
Software Mentions: 2
Published: over 10 years ago

10.1039/c9sc05904k

Al(OR^F)₃ (R^F = C(CF₃)₃) activated silica: a well-defined weakly coordinating surface anion
Cited by: 22
Author(s): Damien B. Culver, Amrit Venkatesh, Winn Huynh, Aaron J. Rossini, Matthew P. Conley
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-021-93305-6

In silico designing of vaccine candidate against Clostridium difficile
Cited by: 8
Author(s): Srijita Basak, Debashrito Deb, Utkarsh Narsaria, Tamalika Kar, Filippo Castiglione, Indraneel Sanyal, Pratap D. Bade, Anurag P. Srivastava
Software Mentions: 2
Published: over 3 years ago

10.3390/s16060854

An IMU Evaluation Method Using a Signal Grafting Scheme
Cited by: 6
Author(s): Xiaoji Niu, Qiang Wang, Quan Zhang, Peng Jiang
Software Mentions: 2
Published: over 8 years ago

10.3390/s18041020

An Effective Hybrid Routing Algorithm in WSN: Ant Colony Optimization in combination with Hop Count Minimization
Cited by: 33
Author(s): Ailian Jiang, Lihong Zheng
Software Mentions: 2
Published: over 6 years ago

10.3390/insects12050406

RNAi-Mediated Silencing of the Chitinase 5 Gene for Fall Webworm (Hyphantria cunea) Can Inhibit Larval Molting Depending on the Timing of dsRNA Injection
Cited by: 8
Author(s): Xun Zhang, Yue Wang, Sufang Zhang, Xiangbo Kong, Fu Liu, Zhen Zhang
Software Mentions: 1
Published: over 3 years ago

10.1111/jcmm.13378

Aquaporin-1 inhibition reduces metastatic formation in a mouse model of melanoma
Cited by: 12
Author(s): Laura Simone, Concetta Domenica Gargano, Francesco Pisani, Antonio Cibelli, Maria Grazia Mola, Antonio Frigeri, María Svelto, Grazia Paola Nicchia
Software Mentions: 1
Published: about 7 years ago

10.1186/s13321-019-0375-2

PUG-View: programmatic access to chemical annotations integrated in PubChem
Cited by: 21
Author(s): Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Jian Zhang, Asta Gindulytė, Evan Bolton
Software Mentions: 1
Published: over 5 years ago

10.3390/jcm9092970

Lessons from the CONSCIOUS-1 Study
Cited by: 8
Author(s): Alexander J. Schüpper, Matthew E Eagles, Sean N Neifert, J Mocco, R. Loch Macdonald
Software Mentions: 1
Published: about 4 years ago

10.1007/s10822-020-00347-5

Quantum–mechanical property prediction of solvated drug molecules: what have we learned from a decade of SAMPL blind prediction challenges?
Cited by: 9
Author(s): Nicolas Tielker, Lukas Eberlein, Gerhard Heßler, K. Friedemann Schmidt, Stefan Güssregen, Stefan M. Kast
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.ppat.1000438

P58IPK: A Novel “CIHD” Member of the Host Innate Defense Response against Pathogenic Virus Infection
Cited by: 41
Author(s): Alan G. Goodman, Jamie L. Fornek, Guruprasad R. Medigeshi, Lucy A. Perrone, Xinxia Peng, Matthew D. Dyer, Sean Proll, Sue E. Knoblaugh, Victoria S. Carter, Marcus J. Korth, Jay A. Nelson, Terrence M. Tumpey, Michael G. Katze
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.ppat.1004278

A Tick Gut Protein with Fibronectin III Domains Aids Borrelia burgdorferi Congregation to the Gut during Transmission
Cited by: 30
Author(s): Sukanya Narasimhan, Jeroen Coumou, Tim J. Schuijt, Eric T. Boder, Joppe W. Hovius, Erol Fikrig
Software Mentions: 1
Published: over 10 years ago

10.1038/s41597-020-0479-6

Geomorpho90m, empirical evaluation and accuracy assessment of global high-resolution geomorphometric layers
Cited by: 62
Author(s): Giuseppe Amatulli, Daniel McInerney, Tushar Sethi, Peter Strobl, Sami Domisch
Software Mentions: 1
Published: over 4 years ago

10.1016/j.scijus.2019.02.001

Evaluation of neodymium isotope analysis of human dental enamel as a provenance indicator using 1013 Ω amplifiers (TIMS)
Cited by: 6
Author(s): Esther Plomp, Isabella C.C. von Holstein, Janne M. Koornneef, Richard Smeets, J.A. Baart, Tim Forouzanfar, Gareth R. Davies
Software Mentions: 1
Published: over 5 years ago

10.1038/srep30013

Identification of MMP1 as a novel risk factor for intracranial aneurysms in ADPKD using iPSC models
Cited by: 30
Author(s): Tomonaga Ameku, Daisuke Taura, Masakatsu Sone, Tomohiro Numata, Masahiro Nakamura, Fumihiko Shiota, Tarō Toyoda, Satoshi Matsui, Toshikazu Araoka, Tetsuhiko Yasuno, Shin Ichi Mae, Hatasu Kobayashi, Naoya Kondo, Fumiyo Kitaoka, Naoki Amano, Sayaka Arai, Tomoko Ichisaka, Nobuki Matsuura, Sumiko Inoue, Takuya Yamamoto, Kazutoshi Takahashi, Isao Asaka, Yoshihiko Yamada, Yoshifumi Ubara, Eri Muso, Atsushi Fukatsu, Akira Watanabe, Yasunori Sato, Tatsutoshi Nakahata, Yasuo Mori, Akio Koizumi, Kazuwa Nakao, Shinya Yamanaka, Kenji Osafune
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-11573-7

Production and Characteristics of a Novel Xylose- and Alkali-tolerant GH 43 β-xylosidase from Penicillium oxalicum for Promoting Hemicellulose Degradation
Cited by: 28
Author(s): Yanxin Ye, Xuezhi Li, Jian Zhao
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-16809-0

Interaction of Synthetic Human SLURP-1 with the Nicotinic Acetylcholine Receptors
Cited by: 17
Author(s): Thomas Durek, Irina V. Shelukhina, Han Shen Tae, Panumart Thongyoo, Ekaterina N. Spirova, Denis S. Kudryavtsev, Igor E. Kasheverov, Grazyna Faure, Pierre‐Jean Corringer, David J. Craik, David J. Adams, Victor I. Tsetlin
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-40051-5

Comparative label-free lipidomic analysis of Mycobacterium tuberculosis during dormancy and reactivation
Cited by: 20
Author(s): Sajith Raghunandanan, Leny Jose, Vipin Gopinath, Ram Mohan Ram Kumar
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-57906-x

In silico Design of a Multivalent Vaccine Against Candida albicans
Cited by: 33
Author(s): Shikha Tarang, Varun Kesherwani, Blake LaTendresse, Laramie Lindgren, Sonia M. Rocha-Sánchez, Michael D. Weston
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-92632-y

NetCleave: an open-source algorithm for predicting C-terminal antigen processing for MHC-I and MHC-II
Cited by: 6
Author(s): Pep Amengual-Rigo, Vı́ctor Guallar
Software Mentions: 1
Published: over 3 years ago

10.3390/s20247237

Guidance for Autonomous Underwater Vehicles in Confined Semistructured Environments
Cited by: 6
Author(s): Zorana Milošević, Rodrigo Pérez Fernández, Sergio Domínguez, Cláudio Rossi
Software Mentions: 1
Published: almost 4 years ago

10.3390/s21165282

A Dictionary Optimization Method for Reconstruction of ECG Signals after Compressed Sensing
Cited by: 6
Author(s): Luca De Vito, Enrico Picariello, Francesco Picariello, Sergio Rapuano, Ioan Tudosă
Software Mentions: 1
Published: over 3 years ago

10.1055/s-0040-1719081

Novel Dual Therapy: A Paradigm Shift in Anticoagulation in Patients of Atrial Fibrillation Undergoing Percutaneous Coronary Intervention
Cited by: 2
Author(s): Akshyaya Pradhan, Monika Bhandari, Pravesh Vishwakarma, Rishi Sethi
Software Mentions: 1
Published: about 4 years ago

10.1186/s13063-021-05398-z

Feasibility and diagnostic accuracy of Telephone Administration of an adapted wound heaLing QuestiONnaire for assessment for surgical site infection following abdominal surgery in low and middle-income countries (TALON): protocol for a study within a trial (SWAT)
Cited by: 3
Author(s): Mwayi Kachapila
Software Mentions: 1
Published: over 3 years ago

10.5402/2012/382862

sTREM-1 as a Prognostic Marker of Postoperative Complications in Cardiac Surgery
Cited by: 2
Author(s): А. С. Головкин, В. Г. Матвеева, E. V. Grigoriev, Д. Л. Шукевич, Y. V. Bayrakova, Barbarash Ls
Software Mentions: 1
Published: almost 12 years ago

10.1155/2020/3759179

A Systematic Review of the Prevalence and Diagnostic Workup of PIK3CA Mutations in HR+/HER2– Metastatic Breast Cancer
Cited by: 28
Author(s): Elizabeth J. Anderson, Lea Mollon, Joni Dean, Terri Warholak, Ayal A. Aizer, Emma Platt, Derek Tang, Lisa E. Davis
Software Mentions: 1
Published: over 4 years ago

10.2196/12488

Digital Education for the Management of Chronic Wounds in Health Care Professionals: Protocol for a Systematic Review by the Digital Health Education Collaboration
Cited by: 16
Author(s): Laura Martinengo, Natalie Jia Ying Yeo, Zheng Qiang Tang, D Kasturi, Kasturi Markandran, Bhone Myint Kyaw, Lorainne Tudor Car
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms140919186

Cinnamomum cassia Essential Oil Inhibits α-MSH-Induced Melanin Production and Oxidative Stress in Murine B16 Melanoma Cells
Cited by: 89
Author(s): Su‐Tze Chou, Wen-Lun Chang, Chi-Wei Chang, Shih-Lan Hsu, Yu‐Che Lin, Ying Shih
Software Mentions: 1
Published: about 11 years ago

10.3390/ijms20010120

Therapeutic Inhibition of Myc in Cancer. Structural Bases and Computer-Aided Drug Discovery Approaches
Cited by: 100
Author(s): Lavinia A. Carabet, Paul S. Rennie, Artem Cherkasov
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21197064

Biphasic Force-Regulated Phosphorylation Site Exposure and Unligation of ERM Bound with PSGL-1: A Novel Insight into PSGL-1 Signaling via Steered Molecular Dynamics Simulations
Cited by: 5
Author(s): Jingjing Feng, Yan Zhang, Quhuan Li, Ying Fang, Jianhua Wu
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms22010447

Evolution of A bHLH Interaction Motif
Cited by: 4
Author(s): Peter S. Millard, Birthe B. Kragelund, Meike Burow
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22126431

Superoxide Dismutase 3-Transduced Mesenchymal Stem Cells Preserve Epithelial Tight Junction Barrier in Murine Colitis and Attenuate Inflammatory Damage in Epithelial Organoids
Cited by: 12
Author(s): Lee-Jung Tak, Hae-Young Kim, Won-Kook Ham, Gaurav Agrahari, Yoojin Seo, Ji Won Yang, Eun-Joo An, Chul Hwan Bang, Min Jung Lee, Hyung–Sik Kim, Taeyoon Kim
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms221910719

The Positive and Negative Immunoregulatory Role of B7 Family: Promising Novel Targets in Gastric Cancer Treatment
Cited by: 28
Author(s): Nadia Bolandi, Afshin Derakhshani, Nima Hemmat, Amir Baghbanzadeh, Zahra Asadzadeh, Mina Afrashteh Nour, Oronzo Brunetti, Renato Bernardini, Nicola Silvestris, Behzad Baradaran
Software Mentions: 1
Published: about 3 years ago

10.2196/jmir.4020

Online Alcohol Assessment and Feedback for Hazardous and Harmful Drinkers: Findings From the AMADEUS-2 Randomized Controlled Trial of Routine Practice in Swedish Universities
Cited by: 28
Author(s): Preben Bendtsen, Marcus Bendtsen, Nadine Karlsson, Ian R. White, Jim McCambridge
Software Mentions: 1
Published: over 9 years ago

10.3390/app9194042

Human Neural Stem Cells Flown into Space Proliferate and Generate Young Neurons
Cited by: 5
Author(s): Carlos Cepeda, Laurent Vergnes, Nicholas Carpo, Matthew J. Schibler, Laurent A. Bentolila, Fathi Karouia, Araceli Espinosa‐Jeffrey
Software Mentions: 1
Published: about 5 years ago

10.1186/s13023-017-0581-9

Management of everolimus-associated adverse events in patients with tuberous sclerosis complex: a practical guide
Cited by: 54
Author(s): David Mark Davies, Anurag Saxena, J. Chris Kingswood
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2156-8-18

Hemi-nested touchdown PCR combined with primer-template mismatch PCR for rapid isolation and sequencing of low molecular weight glutenin subunit gene family from a hexaploid wheat BAC library
Cited by: 21
Author(s): Xiaodong Huang, Sylvie Cloutier
Software Mentions: 1
Published: over 17 years ago

10.1186/s12864-015-1511-7

NF-κB and IRF pathways: cross-regulation on target genes promoter level
Cited by: 97
Author(s): Marta Iwanaszko, Marek Kimmel
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-12-244

Preferential regulation of miRNA targets by environmental chemicals in the human genome
Cited by: 32
Author(s): Xudong Wu, Yi-Jiang Song
Software Mentions: 1
Published: over 13 years ago

10.1186/1756-0500-4-275

Selection of suitable reference genes for quantitative real-time polymerase chain reaction in human meningiomas and arachnoidea
Cited by: 26
Author(s): Christina Pfister, Marcos S Tatabiga, Florian Röser
Software Mentions: 1
Published: over 13 years ago

10.1093/bib/bbu053

The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam
Cited by: 6
Author(s): Zachary Chiang, Åke Västermark, Marco Punta, Penelope Coggill, Jaina Mistry, Alex Bateman, Milton H. Saier
Software Mentions: 1
Published: almost 10 years ago

10.1002/cam4.3278

Testing considerations for phosphatidylinositol‐3‐kinase catalytic subunit alpha as an emerging biomarker in advanced breast cancer
Cited by: 7
Author(s): Deborah Toppmeyer, Michael F. Press
Software Mentions: 1
Published: over 4 years ago

10.3390/ma13163613

Titanium Implants Coated with a Bifunctional Molecule with Antimicrobic Activity: A Rabbit Study
Cited by: 7
Author(s): Antonio Scarano, Francesco Carinci, Tiziana Orsini, Luca Valbonetti, Erda Qorri, Carlo Alberto Bignozzi, Felice Lorusso
Software Mentions: 1
Published: over 4 years ago

10.1039/c8md00149a

A synthetic diphosphoinositol phosphate analogue of inositol trisphosphate
Cited by: 7
Author(s): Andrew M. Riley, J.E. Unterlass, Vera Konieczny, Colin W. Taylor, Thomas Helleday, Barry V. L. Potter
Software Mentions: 1
Published: almost 7 years ago

10.1128/MRA.00005-21

Draft Genome Sequences of Three Strains of Campylobacter jejuni Isolated from Patients with Guillain-Barré Syndrome in Bangladesh
Cited by: 2
Author(s): Zhahirul Islam, Fahmida Habib Nabila, Asaduzzaman Asad, Ruma Begum, Israt Jahan, Shoma Hayat, Hubert P. Endtz
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules26082239

ROS Dependent Antifungal and Anticancer Modulations of Piper colubrinum Osmotin
Cited by: 2
Author(s): Rajeswari Gopal Geetha, Sivakumar Krishnankutty Chandrika, Gayathri G. Saraswathy, Asha Nair Sivakumari, S. Manjula
Software Mentions: 1
Published: over 3 years ago

10.1186/1743-422X-5-136

Ex vivo promoter analysis of antiviral heat shock cognate 70B gene in Anopheles gambiae
Cited by: 14
Author(s): Sang‐Wook Kang, Cheolho Sim, Brian D Byrd, Frank H. Collins, Young Seok Hong
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0021200

Population Genetics of an Ecosystem-Defining Reef Coral Pocillopora damicornis in the Tropical Eastern Pacific
Cited by: 57
Author(s): David J. Combosch, Steven V. Vollmer
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0201142

Predicting the progression of ophthalmic disease based on slit-lamp images using a deep temporal sequence network
Cited by: 18
Author(s): Jiewei Jiang, Xiyang Liu, Lin Liu, Shuai Wang, Erping Long, Haoqing Yang, Fuqiang Yuan, Deying Yu, Kai Zhang, Liming Wang, Zhenzhen Liu, Dongni Wang, Changzun Xi, Zhuoling Lin, Xiaohang Wu, Jiangtao Cui, Ming Zhu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0069810

Overexpression of GmHsp90s, a Heat Shock Protein 90 (Hsp90) Gene Family Cloning from Soybean, Decrease Damage of Abiotic Stresses in Arabidopsis thaliana
Cited by: 85
Author(s): Jing Xu, Chenchen Xue, Xue Dong, Jinming Zhao, Junyi Gai, Na Guo
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0226540

Host interactors of effector proteins of the lettuce downy mildew Bremia lactucae obtained by yeast two-hybrid screening
Cited by: 8
Author(s): Alexandra J. E. Pelgrom, Claudia-Nicole Meisrimler, Joyce Elberse, Thijs Koorman, Mike Boxem, Guido Van den Ackerveken
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0154376

Revelation of Influencing Factors in Overall Codon Usage Bias of Equine Influenza Viruses
Cited by: 81
Author(s): Naveen Kumar, Bidhan Chandra Bera, Benjamin Greenbaum, Sandeep Bhatia, Richa Sood, Selvaraj Pavulraj, Taruna Anand, Bhupendra Nath Tripathi, Nitin Virmani
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0018013

Identification of Contractile Vacuole Proteins in Trypanosoma cruzi
Cited by: 66
Author(s): Paul N. Ulrich, Verónica Jiménez, Mi-Young Park, Vívian T. Martins, James Atwood, Kristen Moles, Dalis E Collins, Peter Rohloff, Rick L. Tarleton, Silvia N.J. Moreno, Ron Orlando, Roberto Docampo
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0203675

Destabilization of the von Willebrand factor A2 domain under oxidizing conditions investigated by molecular dynamics simulations
Cited by: 6
Author(s): Gianluca Interlandi
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0124518

Development of an Efficient Virus Induced Gene Silencing Strategy in the Non-Model Wild Ginger-Zingiber zerumbet and Investigation of Associated Proteome Changes
Cited by: 14
Author(s): Chidambareswaren Mahadevan, Abdul Jaleel, Lokesh Deb, George H. Thomas, S. Manjula
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0090643

Comparative Genome Analysis of Lactobacillus rhamnosus Clinical Isolates from Initial Stages of Dental Pulp Infection: Identification of a New Exopolysaccharide Cluster
Cited by: 22
Author(s): Mangala A. Nadkarni, Zhiliang Chen, Marc R. Wilkins, Neil Hunter
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0206654

Predicting CD4 T-cell epitopes based on antigen cleavage, MHCII presentation, and TCR recognition
Cited by: 22
Author(s): Dina Stroopinsky, Natalia Khuri, Guang Qiang Dong, Michael E. Winter, Eric Shifrut, Nir Friedman, Charles S. Craik, Kathleen P. Pratt, Pedro Paz, Fred Aswad, Andrej Šali
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0133595

A Chimeric HIV-1 gp120 Fused with Vaccinia Virus 14K (A27) Protein as an HIV Immunogen
Cited by: 7
Author(s): Aneesh Vijayan, Juan García‐Arriaza, Suresh C. Raman, José Javier Conesa, Francisco Javier Chichón, César Santiago, Carlos Óscar S. Sorzano, José L. Carrascosa, Mariano Esteban
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0007253

BtubA-BtubB Heterodimer Is an Essential Intermediate in Protofilament Assembly
Cited by: 24
Author(s): Christopher A. Sontag, Harvey J. Sage, Harold P. Erickson
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0124279

Efavirenz-Based Regimens in Antiretroviral-Naive HIV-Infected Patients: A Systematic Review and Meta-Analysis of Randomized Controlled Trials
Cited by: 24
Author(s): Joanna Kryst, Paweł Kawalec, Andrzej Pilc
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0142680

Global Transcriptome Analysis of the Tentacle of the Jellyfish Cyanea capillata Using Deep Sequencing and Expressed Sequence Tags: Insight into the Toxin- and Degenerative Disease-Related Transcripts
Cited by: 31
Author(s): Guoyan Liu, Yonghong Zhou, Dan Liú, Qianqian Wang, Zengliang Ruan, He Qian, Liming Zhang
Software Mentions: 1
Published: about 9 years ago

10.7759/cureus.17236

Effectiveness of Stem Cell Therapies in Improving Clinical Outcomes in Patients With Heart Failure
Cited by: 1
Author(s): Nitin Bhawnani, Aarthi Ethirajulu, Almothana Alkasabera, Chike B Onyali, Comfort Anim-Koranteng, Hira E Shah, Jihan A Mostafa
Software Mentions: 1
Published: over 3 years ago

10.15252/emmm.201707601

Promoterless gene targeting without nucleases rescues lethality of a Crigler‐Najjar syndrome mouse model
Cited by: 44
Author(s): Fabiola Porro, Giulia Bortolussi, Adi Barzel, Alessia De Caneva, Alessandra Iaconcig, Simone Vodret, Lorena Zentilin, Mark A. Kay, Andrés F. Muro
Software Mentions: 1
Published: over 7 years ago

10.1289/ehp.0800360

Limitations of Remotely Sensed Aerosol as a Spatial Proxy for Fine Particulate Matter
Cited by: 94
Author(s): Christopher J. Paciorek, Yang Liu
Software Mentions: 1
Published: over 15 years ago

10.3389/fmolb.2021.630625

Membrane Remodeling by Arc/Arg3.1
Cited by: 6
Author(s): Per Niklas Hedde, Leonel Malacrida, Barbara Baryłko, Derk D. Binns, Joseph P. Albanesi, David M. Jameson
Software Mentions: 1
Published: over 3 years ago

10.3389/fnmol.2017.00192

GSK3α and GSK3β Phosphorylate Arc and Regulate its Degradation
Cited by: 30
Author(s): Agata Gozdz, Oleksii Nikolaienko, Małgorzata Urbańska, Iwona A. Cymerman, Ewa Sitkiewicz, Magdalena Błażejczyk, Michał Dadlez, Clive R. Bramham, Jacek Jaworski
Software Mentions: 1
Published: over 7 years ago

10.3389/fnins.2020.00302

Binding of the Human 14-3-3 Isoforms to Distinct Sites in the Leucine-Rich Repeat Kinase 2
Cited by: 37
Author(s): Jascha Tobias Manschwetus, Maximilian Wallbott, Alexandra Fachinger, Claudia Obergruber, Sabine Pautz, Daniela Bertinetti, Sibylle Schmidt
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2020.00065

L-Ascorbic Acid and α-Tocopherol Synergistically Triggers Apoptosis Inducing Antileukemic Effects of Arsenic Trioxide via Oxidative Stress in Human Acute Promyelocytic Leukemia Cells
Cited by: 9
Author(s): Radhakrishnan Chandraprabha Vineetha, Hariharan Subramanian, Abdul Jaleel, Mahesh Chandran, R. Harikumaran Nair
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2016.00426

The α-Crystallin Domain Containing Genes: Identification, Phylogeny and Expression Profiling in Abiotic Stress, Phytohormone Response and Development in Tomato (Solanum lycopersicum)
Cited by: 24
Author(s): Asosii Paul, Sombir Rao, Saloni Mathur
Software Mentions: 1
Published: over 8 years ago

10.1186/s13059-016-1078-x

Capture Hi-C identifies a novel causal gene, IL20RA, in the pan-autoimmune genetic susceptibility region 6q23
Cited by: 85
Author(s): Amanda McGovern, Stefan Schoenfelder, Paul Martin, Jonathan Massey, Kate Duffus, Darren Plant, Annie Yarwood, Arthur G. Pratt, Amy E. Anderson, John D. Isaacs, Julie Diboll, Nishanthi Thalayasingam, Caroline Ospelt, Anne Barton, Jane Worthington, Peter Fraser, Stephen Eyre, Gisela Orozco
Software Mentions: 1
Published: about 8 years ago