Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: OBITools

https://packages.ecosyste.ms/registries/pypi.org/packages/OBITools

Scripts and library for sequence analysis
60 versions
Latest release: over 1 year ago
352 downloads last month

Papers Mentioning OBITools 91

10.3390/microorganisms7110547
Linking Soil Fungal Generality to Tree Richness in Young Subtropical Chinese Forests
Cited by: 9
Author(s): Christina Weißbecker, Anna Heintz‐Buschart, Helge Bruelheide, François Buscot, Tesfaye Wubet
Software Mentions: 19
Published: about 5 years ago
10.3389/fmicb.2018.02312
Experimental Evidence of Functional Group-Dependent Effects of Tree Diversity on Soil Fungi in Subtropical Forests
Cited by: 26
Author(s): Christina Weißbecker, Tesfaye Wubet, Guillaume Lentendu, Peter Kühn, Thomas Scholten, Helge Bruelheide, François Buscot
Software Mentions: 12
Published: about 6 years ago
10.1038/s41598-020-57760-x
Resident and phytometer plants host comparable rhizosphere fungal communities in managed grassland ecosystems
Cited by: 8
Author(s): Ricardo Schöps, Kezia Goldmann, Lotte Korell, Helge Bruelheide, Tesfaye Wubet, François Buscot
Software Mentions: 10
Published: almost 5 years ago
10.3389/fmicb.2018.02711
Land-Use Intensity Rather Than Plant Functional Identity Shapes Bacterial and Fungal Rhizosphere Communities
Cited by: 45
Author(s): Ricardo Schöps, Kezia Goldmann, Katharina Herz, Guillaume Lentendu, Ingo Schöning, Helge Bruelheide, Tesfaye Wubet, François Buscot
Software Mentions: 9
Published: about 6 years ago
10.1002/ece3.4387
Toward an ecoregion scale evaluation of <scp>eDNA</scp> metabarcoding primers: A case study for the freshwater fish biodiversity of the Murray–Darling Basin (Australia)
Cited by: 69
Author(s): Jonas Bylemans, Dianne Gleeson, Christopher M. Hardy, Elise M. Furlan
Software Mentions: 8
Published: over 6 years ago
10.1002/ece3.7579
Molecular diet analysis of neotropical bats based on fecal DNA metabarcoding
Cited by: 36
Author(s): Melissa R. Ingala, Nancy B. Simmons, Claudia Wultsch, Konstantinos Krampis, Kaiya L. Provost, Susan L. Perkins
Software Mentions: 8
Published: over 3 years ago
10.1093/gigascience/giaa022
PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes
Cited by: 28
Author(s): Haris Zafeiropoulos, Ha Quoc Viet, Katerina Vasileiadou, Antonis Potirakis, Christos Arvanitidis, Pantelis Topalis, Christina Pavloudi, Evangelos Pafilis
Software Mentions: 7
Published: almost 5 years ago
10.1371/journal.pbio.2004108
Rapid environmental effects on gut nematode susceptibility in rewilded mice
Cited by: 94
Author(s): Jacqueline M. Leung, Sarah A. Budischak, Hao Chung The, Christina Hansen, Rowann Bowcutt, Rebecca Neill, Mitchell Shellman, P’ng Loke, Andrea L. Graham
Software Mentions: 7
Published: almost 7 years ago
10.1038/s41598-019-56049-y
Availability of orchid mycorrhizal fungi on roadside trees in a tropical urban landscape
Cited by: 17
Author(s): Muhammad Izuddin, Amrita Srivathsan, Ai‐Lan Lee, Tim Wing Yam, Edward L. Webb
Software Mentions: 6
Published: about 5 years ago
10.1111/1755-0998.13060
Advancing the integration of multi‐marker metabarcoding data in dietary analysis of trophic generalists
Cited by: 60
Author(s): Luís P. da Silva, Vanessa A. Mata, Pedro Lopes, Paulo Pereira, Simon Jarman, Ricardo Lopes, Pedro Beja
Software Mentions: 6
Published: over 5 years ago
10.1038/s41598-018-32917-x
Metabarcoding of marine environmental DNA based on mitochondrial and nuclear genes
Cited by: 42
Author(s): Babett Günther, Thomas Knebelsberger, Hermann Neumann, Silke Laakmann, Pedro Martínez Arbizu
Software Mentions: 5
Published: about 6 years ago
10.1111/mec.14779
How much is enough? Effects of technical and biological replication on metabarcoding dietary analysis
Cited by: 74
Author(s): Vanessa A. Mata, Hugo Rebelo, Francisco Amorim, Gary F. McCracken, Simon Jarman, Pedro Beja
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0222527
Bacterial diversity in Icelandic cold spring sources and in relation to the groundwater amphipod Crangonyx islandicus
Cited by: 7
Author(s): Ragnhildur Guðmundsdóttir, Agnes-Katharina Kreiling, Bjarni K. Kristjánsson, V. Marteinsson, Snæbjörn Pálsson
Software Mentions: 5
Published: about 5 years ago
10.1038/s41598-021-91057-x
Ancient DNA, lipid biomarkers and palaeoecological evidence reveals construction and life on early medieval lake settlements
Cited by: 10
Author(s): Antony G. Brown, Maarten van Hardenbroek, Thierry Fonville, Kimberley Davies, Helen M. M. Mackay, Emily Murray, Katie Head, Phil Barratt, Finbar McCormick, Gentile Francesco Ficetola, Ludovic Gielly, A. Henderson, Anne Crone, Graham Cavers, Peter G. Langdon, Nicki J. Whitehouse, Duncan Pirrie, Inger Greve Alsos
Software Mentions: 5
Published: over 3 years ago
10.1002/ece3.4500
A metabarcoding approach for the feeding habits of European hake in the Adriatic Sea
Cited by: 17
Author(s): Giulia Riccioni, Marco Stagioni, Corrado Piccinetti, Simone Libralato
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pone.0230284
Lake-depth related pattern of genetic and morphological diatom diversity in boreal Lake Bolshoe Toko, Eastern Siberia
Cited by: 15
Author(s): Kathleen R. Stoof‐Leichsenring, Katharina Dulias, Boris K. Biskaborn, Ludmila A Pestryakova, Ulrike Herzschuh
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0165252
Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes
Cited by: 250
Author(s): Philip Francis Thomsen, Peter Rask Møller, Eva Egelyng Sigsgaard, Steen Wilhelm Knudsen, Ole A Jørgensen, Eske Willerslev
Software Mentions: 5
Published: about 8 years ago
10.1371/journal.pone.0226253
DNA metabarcoding-based diet survey for the Eurasian otter (Lutra lutra): Development of a Eurasian otter-specific blocking oligonucleotide for 12S rRNA gene sequencing for vertebrates
Cited by: 16
Author(s): Priyanka Kumari, Ke Dong, Kyung-Yeon Eo, Woo-Shin Lee, Junko Kimura, Naomichi Yamamoto
Software Mentions: 5
Published: about 5 years ago
10.3389/fmicb.2020.00749
Tree Root Zone Microbiome: Exploring the Magnitude of Environmental Conditions and Host Tree Impact
Cited by: 16
Author(s): Jean de Dieu Habiyaremye, Kezia Goldmann, Thomas Reitz, Sylvie Herrmann, François Buscot
Software Mentions: 5
Published: over 4 years ago
10.1038/s41598-017-17150-2
Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact
Cited by: 98
Author(s): Judith Bakker, Owen S. Wangensteen, Demian D. Chapman, Germain Boussarie, Dayne Buddo, Tristan L. Guttridge, Heidi Hertler, David Mouillot, Laurent Vigliola, Stefano Mariani
Software Mentions: 5
Published: about 7 years ago
10.3390/ijms21093262
Whole-Genome Deep Sequencing Reveals Host-Driven in-planta Evolution of Columnea Latent Viroid (CLVd) Quasi-Species Populations
Cited by: 5
Author(s): Parichate Tangkanchanapas, Annelies Haegeman, Tom Ruttink, Monica Höfte, Kris De Jonghe
Software Mentions: 4
Published: over 4 years ago
10.3390/genes8100273
The History of Tree and Shrub Taxa on Bol'shoy Lyakhovsky Island (New Siberian Archipelago) since the Last Interglacial Uncovered by Sedimentary Ancient DNA and Pollen Data
Cited by: 35
Author(s): Heike Zimmermann, Elena Raschke, Laura S. Epp, Kathleen R. Stoof‐Leichsenring, Lutz Schirrmeister, Georg Schwamborn, Ulrike Herzschuh
Software Mentions: 4
Published: about 7 years ago
10.3389/fpls.2021.679428
Altitudinal Zonation of Green Algae Biodiversity in the French Alps
Cited by: 17
Author(s): Adeline Stewart, Delphine Rioux, Frédéric Boyer, Ludovic Gielly, François Pompanon, Amélie Saillard, Wilfried Thuiller, Jean-Gabriel Valay, Éric Maréchal, Éric Coissac
Software Mentions: 4
Published: over 3 years ago
10.1002/ece3.7788
Method for quick DNA barcode reference library construction
Cited by: 11
Author(s): Yanlei Liu, Chao Xu, Yuzhe Sun, Xun Chen, Wenpan Dong, Xiaopan Yang, Shi–Liang Zhou
Software Mentions: 4
Published: over 3 years ago
10.1002/ece3.7679
Pollen DNA metabarcoding identifies regional provenance and high plant diversity in Australian honey
Cited by: 17
Author(s): Liz Milla, J. M. Kale Sniderman, Rose Lines, Mahsa Mousavi‐Derazmahalleh, Francisco Encinas‐Viso
Software Mentions: 4
Published: over 3 years ago
10.7717/peerj.4705
DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers
Cited by: 149
Author(s): Owen S. Wangensteen, Creu Palacín, Magdalena Guardiola, Xavier Turon
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-020-78525-6
Under the karst: detecting hidden subterranean assemblages using eDNA metabarcoding in the caves of Christmas Island, Australia
Cited by: 11
Author(s): Katrina West, Zoe T. Richards, Euan S. Harvey, Robert Susac, Alicia Grealy, Michael Bunce
Software Mentions: 4
Published: about 4 years ago
10.1111/1755-0998.13012
Have the cake and eat it: Optimizing nondestructive DNA metabarcoding of macroinvertebrate samples for freshwater biomonitoring
Cited by: 40
Author(s): Filipa M. S. Martins, Mafalda Galhardo, Ana Filipa Filipe, Amílcar Teixeira, Paulo D. P. Pinheiro, Joana Paupério, Paulo C. Alves, Pedro Beja
Software Mentions: 4
Published: over 5 years ago
10.3897/BDJ.8.e55137
The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of Iberian Plecoptera
Cited by: 7
Author(s): Sónia Ferreira, José Manuel Tierno de Figueroa, Filipa M. S. Martins, Joana Veríssimo, Lorenzo Quaglietta, José Manuel Grosso-Silva, Pedro Lopes, Pedro Sousa, Joana Paupério, Nuno A. Fonseca, Pedro Beja
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0139633
Deep-Sea, Deep-Sequencing: Metabarcoding Extracellular DNA from Sediments of Marine Canyons
Cited by: 133
Author(s): Magdalena Guardiola, María Jesús Uriz, Pierre Taberlet, Éric Coissac, Owen S. Wangensteen, Xavier Turon
Software Mentions: 3
Published: about 9 years ago
10.1038/s41598-018-26648-2
New universal ITS2 primers for high-resolution herbivory analyses using DNA metabarcoding in both tropical and temperate zones
Cited by: 57
Author(s): Rosemary J. Moorhouse‐Gann, Jenny C. Dunn, Natasha de Vere, Martine Goder, Nik C. Cole, Helen Hipperson, William Oliver Christian Symondson
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2020.576750
Variability of the Atmospheric PM10 Microbiome in Three Climatic Regions of France
Cited by: 6
Author(s): Abdoulaye Samaké, Jean M.F. Martins, Aurélie Bonin, Gaëlle Uzu, Pierre Taberlet, Sébastien Conil, Olivier Favez, Alexandre Thomasson, Benjamin Chazeau, Nicolas Marchand, Jean-Luc Jaffrezo
Software Mentions: 3
Published: almost 4 years ago
10.1002/ece3.4606
Differences in the fungal communities nursed by two genetic groups of the alpine cushion plant,<i>Silene acaulis</i>
Cited by: 15
Author(s): Julien Roy, Jean‐Marc Bonneville, Patrick Saccone, Sébastian Ibanez, Cécile H. Albert, Martí Boleda, Maya Guéguen, Marc Ohlmann, Delphine Rioux, Jean‐Christophe Clément, Sébastien Lavergne, R. Geremia
Software Mentions: 3
Published: about 6 years ago
10.1002/ece3.7265
Integrating omics to characterize eco‐physiological adaptations: How moose diet and metabolism differ across biogeographic zones
Cited by: 3
Author(s): Christian Fohringer, Ilona Dudka, Robert L. Spitzer, Fredrik Stenbacka, Olena Rzhepishevska, Joris P. G. M. Cromsigt, Gerhard Gröbner, Göran Ericsson, Navinder J. Singh
Software Mentions: 3
Published: almost 4 years ago
10.1002/ece3.3687
Proper experimental design requires randomization/balancing of molecular ecology experiments
Cited by: 18
Author(s): Miklós Bálint, Orsolya Márton, Marlene Schatz, Rolf Alexander Düring, Hans‐Peter Grossart
Software Mentions: 3
Published: almost 7 years ago
10.7717/peerj.2807
Spatio-temporal monitoring of deep-sea communities using metabarcoding of sediment DNA and RNA
Cited by: 80
Author(s): Magdalena Guardiola, Owen S. Wangensteen, Pierre Taberlet, Éric Coissac, María Jesús Uriz, Xavier Turon
Software Mentions: 3
Published: about 8 years ago
10.1038/s41598-017-03356-x
Social odours covary with bacterial community in the anal secretions of wild meerkats
Cited by: 49
Author(s): Sarah Leclaire, Staffan Jacob, Lydia K. Greene, George R. Dubay, Christine M. Drea
Software Mentions: 3
Published: over 7 years ago
10.3390/genes11020150
Distribution of Medically Relevant Antibiotic Resistance Genes and Mobile Genetic Elements in Soils of Temperate Forests and Grasslands Varying in Land Use
Cited by: 8
Author(s): Inka M. Willms, Jingyue Yuan, Caterina Penone, Kezia Goldmann, Juliane Vogt, Tesfaye Wubet, Ingo Schöning, Marion Schrumpf, François Buscot, Heiko Nacke
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41598-018-35550-w
Temporal and spatial patterns of mitochondrial haplotype and species distributions in Siberian larches inferred from ancient environmental DNA and modeling
Cited by: 23
Author(s): Laura S. Epp, Stefan Kruse, Nadja J. Kath, Kathleen R. Stoof‐Leichsenring, Ralph Tiedemann, Ludmila A Pestryakova, Ulrike Herzschuh
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pone.0060799
Unveiling the Diet of Elusive Rainforest Herbivores in Next Generation Sequencing Era? The Tapir as a Case Study
Cited by: 58
Author(s): Fabrice Hibert, Pierre Taberlet, Jérôme Chave, Caroline Scotti‐Saintagne, Daniel Sabatier, Cécile Richard‐Hansen
Software Mentions: 2
Published: over 11 years ago
10.1186/s12862-021-01895-6
Seeing through sedimented waters: environmental DNA reduces the phantom diversity of sharks and rays in turbid marine habitats
Cited by: 16
Author(s): Yin Cheong Aden Ip, Jia Jin Marc Chang, Kelvin K. P. Lim, Zeehan Jaafar, Benjamin J. Wainwright, Danwei Huang
Software Mentions: 2
Published: over 3 years ago
10.1186/s12862-018-1160-y
Phylogenomics and barcoding of Panax: toward the identification of ginseng species
Cited by: 42
Author(s): Vincent Manzanilla, Anneleen Kool, Linh Nguyen Nhat, Nông Văn Hải, Huu Thu, Hugo de Boer
Software Mentions: 2
Published: over 6 years ago
10.3897/BDJ.8.e57089
Plant diversity in sedimentary DNA obtained from high-latitude (Siberia) and high-elevation lakes (China)
Cited by: 9
Author(s): Kathleen R. Stoof‐Leichsenring, Sisi Liu, Weihan Jia, Li Kai, Ludmila A Pestryakova, Steffen Mischke, Xianyong Cao, Xingqi Liu, Jian Ni, Stefan Neuhaus, Ulrike Herzschuh
Software Mentions: 2
Published: about 4 years ago
10.3390/microorganisms8020210
Early Stage Root-Associated Fungi Show a High Temporal Turnover, but Are Independent of Beech Progeny
Cited by: 4
Author(s): Kezia Goldmann, Silke Ammerschubert, Rodica Pena, Andrea Polle, Bian Wu, Tesfaye Wubet, François Buscot
Software Mentions: 2
Published: almost 5 years ago
10.3390/microorganisms9020361
DNA Metabarcoding for the Characterization of Terrestrial Microbiota—Pitfalls and Solutions
Cited by: 36
Author(s): Davide Francioli, Guillaume Lentendu, Simon Lewin, Steffen Kolb
Software Mentions: 2
Published: almost 4 years ago
10.7717/peerj.11753
Exploring plant diversity through soil DNA in Thai national parks for influencing land reform and agriculture planning
Cited by: 3
Author(s): Maslin Osathanunkul, Nipitpong Sawongta, Panagiotis Madesis, Nikolaos Pechlivanis, Fotis Psomopoulos, Panagiotis Madesis
Software Mentions: 2
Published: over 3 years ago
10.7717/peerj.7669
Searching for phylogenetic patterns of Symbiodiniaceae community structure among Indo-Pacific Merulinidae corals
Cited by: 14
Author(s): Sébastien Leveque, Lutfi Afiq‐Rosli, Yin Cheong Aden Ip, Sudhanshi S. Jain, Danwei Huang
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.11936
Issues of under-representation in quantitative DNA metabarcoding weaken the inference about diet of the tundra vole <i>Microtus oeconomus</i>
Cited by: 7
Author(s): Magne Neby, Stefaniya Kamenova, Olivier Devineau, Rolf A. Ims, Eeva M. Soininen
Software Mentions: 2
Published: over 3 years ago
10.1186/s12859-019-2663-2
SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data
Cited by: 45
Author(s): Yoann Dufresne, Franck Lejzerowicz, Laure Apotheloz Perret-Gentil, Jan Pawłowski, Tristan Cordier
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0196589
Molecular gut content analysis of different spider body parts
Cited by: 48
Author(s): Nuria Macías–Hernández, Kacie J. Athey, Vanina Tonzo, Owen S. Wangensteen, Miquel A. Arnedo, James D. Harwood
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0115335
Highly Overlapping Winter Diet in Two Sympatric Lemming Species Revealed by DNA Metabarcoding
Cited by: 115
Author(s): Eeva M. Soininen, Gilles Gauthier, Frédéric Bilodeau, Dominique Berteaux, Ludovic Gielly, Pierre Taberlet, Galina Gussarova, Eva Bellemain, Kristian Hassel, Hans K. Stenøien, Laura S. Epp, Audun Schrøder-Nielsen, Christian Brochmann, Nigel G. Yoccoz
Software Mentions: 2
Published: almost 10 years ago
10.1371/journal.pone.0159133
DNA Metabarcoding Reveals Diet Overlap between the Endangered Walia Ibex and Domestic Goats - Implications for Conservation
Cited by: 35
Author(s): Berihun Gebremedhin, Øystein Flagstad, Afework Bekele, Desalegn Chala, Vegar Bakkestuen, Sanne Boessenkool, Magnus Popp, Galina Gussarova, Audun Schrøder-Nielsen, Sileshi Nemomissa, Christian Brochmann, Nils Chr. Stenseth, Laura S. Epp
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0228832
Identifying priority landscapes for conservation of snow leopards in Pakistan
Cited by: 15
Author(s): Shafqat Hameed, Jaffar Ud Din, Hussain Ali, Muhammad Kabir, Muhammad Younas, Ejaz Ur Rehman, Fathul Bari, Hao Wang, Richard Bischof, Muhammad Ali Nawaz
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pone.0208592
Direct fishing and eDNA metabarcoding for biomonitoring during a 3-year survey significantly improves number of fish detected around a South East Asian reservoir
Cited by: 32
Author(s): Benjamin Gillet, Maud Cottet, Thibault Destanque, Kaoboun Kue, Stéphane Descloux, Vincent Chanudet, Sandrine Hughes
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0157977
Diet Assessment Based on Rumen Contents: A Comparison between DNA Metabarcoding and Macroscopy
Cited by: 37
Author(s): Ruth V. Nichols, Mikael Åkesson, Petter Kjellander
Software Mentions: 2
Published: over 8 years ago
10.3389/fmicb.2018.01524
Dynamics of Gut Microbiota Diversity During the Early Development of an Avian Host: Evidence From a Cross-Foster Experiment
Cited by: 65
Author(s): Aimeric Teyssier, Luc Lens, Erik Matthysen, Joël White
Software Mentions: 2
Published: over 6 years ago
10.3390/genes11101121
Takeaways from Mobile DNA Barcoding with BentoLab and MinION
Cited by: 30
Author(s): Jia Jin Marc Chang, Yin Cheong Aden Ip, Chin Soon Lionel Ng, Danwei Huang
Software Mentions: 2
Published: about 4 years ago
10.1098/rsos.160635
Next-generation freshwater bioassessment: eDNA metabarcoding with a conserved metazoan primer reveals species-rich and reservoir-specific communities
Cited by: 77
Author(s): Nicholas K. M. Lim, Y. C. Tay, Amrita Srivathsan, Jonathan W. T. Tan, Jeffrey T. B. Kwik, Bilgenur Baloğlu, Rudolf Meier, Darren C. J. Yeo
Software Mentions: 2
Published: about 8 years ago
10.1038/srep27282
Using metabarcoding to reveal and quantify plant-pollinator interactions
Cited by: 107
Author(s): André Pornon, Nathalie Escaravage, Monique Burrus, Hélène Holota, Aurélie Khimoun, Jérôme Mariette, Charlène Pellizzari, Amaia Iribar, Rampal S. Etienne, Pierre Taberlet, Marie Vidal, Peter Winterton, Lucie Zinger, Christophe Andalo
Software Mentions: 2
Published: over 8 years ago
10.1038/srep41909
Molecular dietary analysis of two sympatric felids in the Mountains of Southwest China biodiversity hotspot and conservation implications
Cited by: 40
Author(s): Mengyin Xiong, Dajun Wang, Hongliang Bu, Xinning Shao, Dan Zhang, Sheng Li, Rongjiang Wang, Meng Yao
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41598-019-39399-5
Optimizing environmental DNA sampling effort for fish inventories in tropical streams and rivers
Cited by: 77
Author(s): Isabel Cantera, Kévin Cilleros, Alice Valentini, Axel Cerdan, Tony Déjean, Amaia Iribar, Pierre Taberlet, Régis Vigouroux, Sébastien Brosse
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-021-85488-9
eDNA metabarcoding for biodiversity assessment, generalist predators as sampling assistants
Cited by: 16
Author(s): Louise Solveig Nørgaard, Carsten Riis Olesen, Kristian Trøjelsgaard, Cino Pertoldi, Jeppe Lund Nielsen, Pierre Taberlet, Aritz Ruíz-González, Marta De Barba, Laura Iacolina
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-90598-5
eDNA sampled from stream networks correlates with camera trap detection rates of terrestrial mammals
Cited by: 28
Author(s): Arnaud Lyet, Loïc Pellissier, Alice Valentini, Tony Déjean, Abigail Hehmeyer, Robin Naidoo
Software Mentions: 2
Published: over 3 years ago
10.1093/conphys/coaa109
Diverging landscape impacts on macronutrient status despite overlapping diets in managed (Apis mellifera) and native (Melissodes desponsa) bees
Cited by: 4
Author(s): Christina L. Mogren, María‐Soledad Benítez, Kevin S. McCarter, Frédéric Boyer, Jonathan G. Lundgren
Software Mentions: 1
Published: almost 5 years ago
10.3897/BDJ.8.e49985
The InBIO Barcoding Initiative Database: DNA barcodes of Portuguese Diptera 01
Cited by: 8
Author(s): Sónia Ferreira, Rui Andrade, Ana Gonçalves, Pedro Sousa, Joana Paupério, Nuno A. Fonseca, Pedro Beja
Software Mentions: 1
Published: almost 5 years ago
10.1038/s42003-021-01760-8
Passive eDNA collection enhances aquatic biodiversity analysis
Cited by: 36
Author(s): Cindy Bessey, Simon Jarman, Tiffany Simpson, Haylea C. Miller, Todd Stewart, John K. Keesing, Oliver Berry
Software Mentions: 1
Published: almost 4 years ago
10.1093/plankt/fbaa039
Temperature-dependent egg production and egg hatching rates of small egg-carrying and broadcast-spawning copepods Oithona similis, Microsetella norvegica and Microcalanus pusillus
Cited by: 8
Author(s): Coralie Barth-Jensen, Marja Koski, Øystein Varpe, Peter Glad, Owen S. Wangensteen, Kim Præbel, Camilla Svensen
Software Mentions: 1
Published: over 4 years ago
10.1098/rsos.201388
A novel metabarcoding primer pair for environmental DNA analysis of Cephalopoda (Mollusca) targeting the nuclear 18S rRNA region
Cited by: 10
Author(s): Daniëlle de Jonge, Véronique Merten, Till Bayer, Oscar Puebla, Thorsten B. H. Reusch, Henk-Jan T. Hoving
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41597-019-0218-z
Fungi of French Guiana gathered in a taxonomic, environmental and molecular dataset
Cited by: 4
Author(s): Gaëlle Jaouen, Audrey Sagne, Bart Buyck, Cony Decock, Eliane Louisanna, Sophie Manzi, Christopher Baraloto, Mélanie Roy, Heidy Schimann
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-021-94227-z
Cascading effects of moth outbreaks on subarctic soil food webs
Cited by: 10
Author(s): Irene Calderón‐Sanou, Tamara Münkemüller, Lucie Zinger, Heidy Schimann, Nigel G. Yoccoz, Ludovic Gielly, Arnaud Foulquier, Mickaël Hedde, Marc Ohlmann, Mélanie Roy, Sara Si-Moussi, Wilfried Thuiller
Software Mentions: 1
Published: over 3 years ago
10.1038/srep37952
Assessing the feasibility of fly based surveillance of wildlife infectious diseases
Cited by: 17
Author(s): Constanze Hoffmann, Melanie Stockhausen, Kevin Merkel, Sébastien Calvignac‐Spencer, Fabian H. Leendertz
Software Mentions: 1
Published: about 8 years ago
10.1038/s41598-021-97300-9
Analysis of complex trophic networks reveals the signature of land-use intensification on soil communities in agroecosystems
Cited by: 9
Author(s): Juliette Bloor, Sara Si-Moussi, Pierre Taberlet, Pascal Carrère, Mickaël Hedde
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0032104
Prey Preference of Snow Leopard (Panthera uncia) in South Gobi, Mongolia
Cited by: 113
Author(s): Wasim Shehzad, Thomas M. McCarthy, François Pompanon, Purevjav Lkhagvajav, Éric Coissac, Tiayyba Riaz, Pierre Taberlet
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0151220
Oral Samples as Non-Invasive Proxies for Assessing the Composition of the Rumen Microbial Community
Cited by: 59
Author(s): Ilma Tapio, Kevin J. Shingfield, Nest McKain, Aurélie Bonin, Daniel Fischer, Ali Bayat, Johanna Vilkki, Pierre Taberlet, Timothy J. Snelling, R. J. Wallace
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0157366
Spatial Representativeness of Environmental DNA Metabarcoding Signal for Fish Biodiversity Assessment in a Natural Freshwater System
Cited by: 146
Author(s): Raphaël Civade, Tony Déjean, Alice Valentini, Nicolas Roset, Jean Claude Raymond, Aurélie Bonin, Pierre Taberlet, Didier Pont
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0162493
Detection of Invasive Mosquito Vectors Using Environmental DNA (eDNA) from Water Samples
Cited by: 72
Author(s): Judith Schneider, Alice Valentini, Tony Déjean, Fabrizio Montarsi, Pierre Taberlet, Olivier Glaizot, Luca Fumagalli
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0195403
Plant DNA metabarcoding of lake sediments: How does it represent the contemporary vegetation
Cited by: 112
Author(s): Inger Greve Alsos, Youri Lammers, Nigel G. Yoccoz, Tina Jørgensen, Per Sjøgren, Ludovic Gielly, Mary E. Edwards
Software Mentions: 1
Published: over 6 years ago
10.3390/jof7020099
In Silico Study Suggesting the Bias of Primers Choice in the Molecular Identification of Fungal Aerosols
Cited by: 6
Author(s): Hamza Mbareche, Marc Veillette, Guillaume J. Bilodeau
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0058971
A DNA Metabarcoding Study of a Primate Dietary Diversity and Plasticity across Its Entire Fragmented Range
Cited by: 90
Author(s): Erwan Quéméré, Fabrice Hibert, Christian Miquel, Émeline Lhuillier, Emmanuel Rasolondraibe, Julie Champeau, Clément Rabarivola, Louis Nusbaumer, Cyrille Chatelain, Laurent Gautier, Patrick Ranirison, Brigitte Crouau‐Roy, Pierre Taberlet, Lounès Chikhi
Software Mentions: 1
Published: almost 12 years ago
10.1038/s41598-019-55989-9
Persistence of arctic-alpine flora during 24,000 years of environmental change in the Polar Urals
Cited by: 34
Author(s): Charlotte Clarke, Mary E. Edwards, Ludovic Gielly, Dorothée Ehrich, Paul Hughes, Л. М. Морозова, Haflidi Haflidason, Jan Mangerud, John Inge Svendsen, Inger Greve Alsos
Software Mentions: 1
Published: almost 5 years ago
10.3897/zookeys.1054.64608
DNA Barcoding of Portuguese Lacewings (Neuroptera) and Snakeflies (Raphidioptera) (Insecta, Neuropterida)
Cited by: 1
Author(s): Daniel Oliveira, Cátia Chaves, Joana Pinto, Joana Paupério, Nuno A. Fonseca, Pedro Beja, Sónia Ferreira
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-020-67452-1
Persistence of environmental DNA in cultivated soils: implication of this memory effect for reconstructing the dynamics of land use and cover changes
Cited by: 27
Author(s): Anthony Foucher, Olivier Evrard, Gentile Francesco Ficetola, Ludovic Gielly, Julie Poulain, Charline Giguet-Covex, J. Patrick Laceby, Sébastien Salvador‐Blanes, Olivier Cerdan, Jérôme Poulenard
Software Mentions: 1
Published: over 4 years ago
10.3897/BDJ.9.e65314
The InBIO Barcoding Initiative Database: DNA barcodes of Portuguese Hemiptera 01
Cited by: 0
Author(s): Pedro Sousa, José Manuel Grosso-Silva, Rui Andrade, Cátia Chaves, Joana Pinto, Joana Paupério, Pedro Beja, Sónia Ferreira
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2164-11-434
An In silico approach for the evaluation of DNA barcodes
Cited by: 336
Author(s): Gentile Francesco Ficetola, Éric Coissac, Stéphanie Zundel, Tiayyba Riaz, Wasim Shehzad, Julien Bessière, Pierre Taberlet, François Pompanon
Software Mentions: 1
Published: almost 15 years ago
10.1002/ece3.3791
Meta-barcoding insights into the spatial and temporal dietary patterns of the threatened Asian Great Bustard (<i>Otis tarda dybowskii</i>) with potential implications for diverging migratory strategies
Cited by: 14
Author(s): Gang Liu, Aaron B. A. Shafer, Xiaolong Hu, Linhai Li, Yu Ning, Minghao Gong, Lijuan Cui, Huixin Li, Defu Hu, Lei Qi, Hengjiu Tian, Bojun Wang
Software Mentions: 1
Published: almost 7 years ago
10.1002/ece3.2186
Estimating species richness using environmental <scp>DNA</scp>
Cited by: 158
Author(s): Brett P. Olds, Christopher L. Jerde, Mark A. Renshaw, Yiyuan Li, Nathan T. Evans, Catherine Turner, Kristy Deiner, Andrew R. Mahon, Michael A. Brueseke, Patrick D. Shirey, Michael E. Pfrender, David M. Lodge, Gary A. Lamberti
Software Mentions: 1
Published: over 8 years ago
10.1002/ece3.5105
Intricate trophic links between threatened vertebrates confined to a small island in the Atlantic Ocean
Cited by: 13
Author(s): Ricardo J. Lopes, Catarina J. Pinho, Bárbara Santos, Mariana Seguro, Vanessa A. Mata, Bastian Egeter, Raquel Vasconcelos
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2016.00200
Postoperative Changes in Fecal Bacterial Communities and Fermentation Products in Obese Patients Undergoing Bilio-Intestinal Bypass
Cited by: 88
Author(s): Vania Patrone, Elia Vajana, Andrea Minuti, Maria Luisa Callegari, Alessandro Federico, C. Loguercio, Marcello Dallio, Salvatore Tolone, Ludovico Docimo, L. Morelli
Software Mentions: 1
Published: almost 9 years ago
10.1002/ece3.4985
Invasion genetics from eDNA and thousands of larvae: A targeted metabarcoding assay that distinguishes species and population variation of zebra and quagga mussels
Cited by: 39
Author(s): Nathaniel T. Marshall, Carol A. Stepien
Software Mentions: 1
Published: almost 6 years ago
10.3389/fpls.2017.02241
Current Knowledge and Computational Techniques for Grapevine Meta-Omics Analysis
Cited by: 13
Author(s): Salvatore Alaimo, Gioacchino P. Marceca, Rosalba Giugno, Alfredo Ferro, Alfredo Pulvirenti
Software Mentions: 1
Published: almost 7 years ago
10.1002/ece3.5955
Vegetation state changes in the course of shrub encroachment in an African savanna since about 1850 CE and their potential drivers
Cited by: 13
Author(s): Ximena Tabares, Heike Zimmermann, Elisabeth Dietze, Gregor Ratzmann, Lukas Belz, Andrea Vieth‐Hillebrand, Lydie M Dupont, Heinz Wilkes, Benjamin Mapani, Ulrike Herzschuh
Software Mentions: 1
Published: almost 5 years ago