Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giaa022

https://doi.org/10.1093/gigascience/giaa022

PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes

Cited by: 28
Author(s): Haris Zafeiropoulos, Ha Quoc Viet, Katerina Vasileiadou, Antonis Potirakis, Christos Arvanitidis, Pantelis Topalis, Christina Pavloudi, Evangelos Pafilis
Published: over 4 years ago

Software Mentions 7

bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
pypi: BDS

Papers that mentioned: 31
pypi: gappa

Papers that mentioned: 8
pypi: OBITools
Scripts and library for sequence analysis
Papers that mentioned: 91
pypi: Silva
Silva Content Management System
Papers that mentioned: 445
pypi: Swarm
Swarm is a strategy rouge-like space simulator game written with `pygame/python3`.
Papers that mentioned: 151