Ecosyste.ms: Papers

10.1186/s40168-021-01054-5

A multi-OMIC characterisation of biodegradation and microbial community succession within the PET plastisphere
Cited by: 39
Author(s): Robyn J. Wright, Rafael Bosch, Morgan G. I. Langille, Matthew I. Gibson, Joseph Alexander Christie-Oleza
Software Mentions: 9
Published: over 3 years ago

10.1093/gigascience/giaa022

PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes
Cited by: 28
Author(s): Haris Zafeiropoulos, Ha Quoc Viet, Katerina Vasileiadou, Antonis Potirakis, Christos Arvanitidis, Pantelis Topalis, Christina Pavloudi, Evangelos Pafilis
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0217050

Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples
Cited by: 61
Author(s): Lucas Czech, Alexandros Stamatakis
Software Mentions: 6
Published: over 5 years ago

10.1038/s42003-020-01477-0

Differential longitudinal establishment of human fecal bacterial communities in germ-free porcine and murine models
Cited by: 9
Author(s): Nirosh D. Aluthge, Wesley A Tom, Alison Bartenslager, Thomas E. Burkey, Phillip S. Miller, Kelly D. Heath, Craig Kreikemeier-Bower, Hatem Kittana, Robert Schmaltz, Amanda E. Ramer‐Tait, Samodha C. Fernando
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0248485

16S rRNA gene amplicon-based metagenomic analysis of bacterial communities in the rhizospheres of selected mangrove species from Mida Creek and Gazi Bay, Kenya
Cited by: 21
Author(s): Edith M. Muwawa, Chinedu Christopher Obieze, Huxley Mae Makonde, Joyce Jefwa, James H. P. Kahindi, Damase Khasa
Software Mentions: 5
Published: over 3 years ago

10.1080/20002297.2020.1742527

The relationship between cigarette smoking and the tongue microbiome in an East Asian population
Cited by: 14
Author(s): Noriaki Sato, Masanori Kakuta, Eiichiro Uchino, Takanori Hasegawa, Ryosuke Kojima, Wataru Kobayashi, Kaori Sawada, Yoshihiro Tamura, Itoyo Tokuda, Seiya Imoto, Shigeyuki Nakaji, Koichi Murashita, Yasushi Okuno
Software Mentions: 4
Published: almost 5 years ago

10.1093/bioinformatics/bty767

Methods for automatic reference trees and multilevel phylogenetic placement
Cited by: 35
Author(s): Lucas Czech, Pierre Barbera, Alexandros Stamatakis
Software Mentions: 4
Published: about 6 years ago

10.1093/bioinformatics/btz799

PhyloMagnet: fast and accurate screening of short-read meta-omics data using gene-centric phylogenetics
Cited by: 8
Author(s): Max Emil Schön, Laura Eme, Thijs J. G. Ettema
Software Mentions: 2
Published: about 5 years ago