pypi: figtree | Projects | Ecosyste.ms: Papers

10.1371/journal.pntd.0007061

Population genetic structure and geographical variation in Neotricula aperta (Gastropoda: Pomatiopsidae), the snail intermediate host of Schistosoma mekongi (Digenea: Schistosomatidae)
Cited by: 2
Author(s): Stephen W. Attwood, Liang Liu, Guan-Nan Huo
Software Mentions: 12
Published: over 5 years ago

10.1111/1755-0998.13220

High‐contiguity genome assembly of the chemosynthetic gammaproteobacterial endosymbiont of the cold seep tubeworm Lamellibrachia barhami
Cited by: 6
Author(s): Corinna Breusing, Darrin T. Schultz, Sebastian Sudek, Alexandra Z. Worden, Charles W. Young
Software Mentions: 11
Published: about 4 years ago

10.1111/mec.15179

Salinity drives meiofaunal community structure dynamics across the Baltic ecosystem
Cited by: 25
Author(s): Elias Broman, Caroline Raymond, Christian Sommer, Jonas S. Gunnarsson, Simon Creer, Francisco J. A. Nascimento
Software Mentions: 10
Published: about 5 years ago

10.1002/ece3.5597

Population structure, connectivity, and demographic history of an apex marine predator, the bull sharkCarcharhinus leucas
Cited by: 16
Author(s): Agathe Pirog, Virginie Ravigné, Michaël C. Fontaine, Adrien Rieux, Aude Gilabert, Geremy Cliff, Éric Clua, Ryan Daly, Michael R. Heithaus, Jérémy J. Kiszka, Philip Matich, John Nevill, Amy F. Smoothey, Andrew J. Temple, Per Berggren, Sébastien Jaquemet, Hélène Magalon
Software Mentions: 8
Published: almost 5 years ago

10.1111/mec.14523

Shifts in diversification rates and host jump frequencies shaped the diversity of host range among Sclerotiniaceae fungal plant pathogens
Cited by: 39
Author(s): Olivier Navaud, Adelin Barbacci, Andrew Taylor, John P. Clarkson, Sylvain Raffaele
Software Mentions: 8
Published: over 6 years ago

10.1111/mec.14931

The evolution of abdominal microbiomes in fungus‐growing ants
Cited by: 23
Author(s): Panagiotis Sapountzis, David R. Nash, Morten Schiøtt, Jacobus J. Boomsma
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-017-02157-6

Molecular phylogenetics and biogeography of the mint tribe Elsholtzieae (Nepetoideae, Lamiaceae), with an emphasis on its diversification in East Asia
Cited by: 22
Author(s): Pan Li, Zhe-Chen Qi, Luxian Liu, Tetsuo Ohi‐Toma, Dong Kun Lee, Tsung‐Hsin Hsieh, Chengxin Fu, Kenneth M. Cameron, Ying‐Xiong Qiu
Software Mentions: 7
Published: over 7 years ago

10.1111/mec.15366

Genomic patterns in the widespread Eurasian lynx shaped by Late Quaternary climatic fluctuations and anthropogenic impacts
Cited by: 36
Author(s): María Lucena-Pérez, Elena Marmesat, Daniel Kleinman‐Ruiz, Begoña Martínez‐Cruz, Karolina Wȩcek, Alexander P. Saveljev, Ivan V. Seryodkin, И. М. Охлопков, Mikhail G. Dvornikov, Jurijs Ozoliņš, Naranbaatar Galsandorj, Milan Paunović, Mirosław Ratkiewicz, Krzysztof Schmidt, José A. Godoy
Software Mentions: 7
Published: over 4 years ago

10.1186/s12864-018-4896-2

Refining a steroidogenic model: an analysis of RNA-seq datasets from insect prothoracic glands
Cited by: 8
Author(s): Panagiotis Moulos, Αλέξανδρος Αλεξανδράτος, Ioannis Nellas, Skarlatos G. Dedos
Software Mentions: 7
Published: about 6 years ago

10.1002/ece3.5111

Genetic population structure and demography of an apex predator, the tiger sharkGaleocerdo cuvier
Cited by: 21
Author(s): Agathe Pirog, Sébastien Jaquemet, Virginie Ravigné, Geremy Cliff, Éric Clua, Bonnie J. Holmes, Nigel E. Hussey, John Nevill, Andrew J. Temple, Per Berggren, Laurent Vigliola, Hélène Magalon
Software Mentions: 7
Published: over 5 years ago

10.1111/mec.13891

Genomic epidemiology of Cryptococcus yeasts identifies adaptation to environmental niches underpinning infection across an African <scp>HIV</scp>/<scp>AIDS</scp> cohort
Cited by: 51
Author(s): Mathieu Vanhove, Mathew A. Beale, Johanna Rhodes, Duncan Chanda, Shabir Lakhi, Geoffrey Kwenda, Síle F. Molloy, Natasha Karunaharan, Neil Stone, Thomas S. Harrison, Tihana Bicanic, Matthew C. Fisher
Software Mentions: 7
Published: almost 8 years ago

10.1111/irv.12373

Serotype and genetic diversity of human rhinovirus strains that circulated in Kenya in 2008
Cited by: 12
Author(s): Sylvia Milanoi, Juliette R. Ongus, George Gachara, Rodney L. Coldren, Wallace Bulimo
Software Mentions: 6
Published: over 8 years ago

10.1111/mec.14123

Adaptive sequence evolution is driven by biotic stress in a pair of orchid species (Dactylorhiza) with distinct ecological optima
Cited by: 22
Author(s): Francisco Balao, Emiliano Trucchi, Thomas M. Wolfe, Bao Hai Hao, María Teresa Cáceres Lorenzo, Juliane Baar, Laura Sedman, Carolin Kosiol, Fabian Amman, Mark W. Chase, Mikael Hedrén, Ovidiu Paun
Software Mentions: 6
Published: over 7 years ago

10.1002/ece3.4237

Gene flow and Andean uplift shape the diversification of Gasteracantha cancriformis (Araneae: Araneidae) in Northern South America
Cited by: 19
Author(s): Fabian C. Salgado-Roa, Carolina Pardo‐Díaz, Eloisa Lasso, Carlos F. Arias, Vera Nisaka Solferini, Camilo Salazar
Software Mentions: 6
Published: about 6 years ago

10.1002/ece3.5793

Phylogeography and population genetics of pine butterflies: Sky islands increase genetic divergence
Cited by: 12
Author(s): Dale A. Halbritter, Caroline Storer, Akito Y. Kawahara, Jaret C. Daniels
Software Mentions: 6
Published: almost 5 years ago

10.1111/1755-0998.13205

A new method of metabarcoding Microsporidia and their hosts reveals high levels of microsporidian infections in mosquitoes (Culicidae)
Cited by: 25
Author(s): Artur Trzebny, Anna Słodkowicz-Kowalska, James J. Becnel, Neil D. Sanscrainte, Mirosława Dabert
Software Mentions: 6
Published: about 4 years ago

10.1111/jbi.12471

Speciation in the dark: diversification and biogeography of the deep‐sea gastropod genusScaphanderin the Atlantic Ocean
Cited by: 26
Author(s): Mari Heggernes Eilertsen, Manuel António E. Malaquias
Software Mentions: 5
Published: over 9 years ago

10.1111/1751-7915.12239

Detection and evolutionary analysis of picobirnaviruses in treated wastewater
Cited by: 9
Author(s): Shiwei Zhang, Ruihua Bai, Run Feng, Hongxun Zhang, Lixin Liu
Software Mentions: 5
Published: over 9 years ago

10.1002/ece3.2931

Phylogeography of a widespread small carnivore, the western spotted skunk (Spilogale gracilis) reveals temporally variable signatures of isolation across western North America
Cited by: 11
Author(s): Adam W. Ferguson, Molly M. McDonough, Gema I. Guerra, Margaret Rheude, Jerry W. Dragoo, Loren K. Ammerman, Robert C. Dowler
Software Mentions: 5
Published: over 7 years ago

10.1002/ece3.3175

Biogeography and systematics of endemic island damselflies: The Nesobasis and Melanesobasis (Odonata: Zygoptera) of Fiji
Cited by: 10
Author(s): Christopher D. Beatty, Melissa Sánchez Herrera, Jeffrey H. Skevington, Arash Rashed, Hans Van Gossum, Scott Kelso, Thomas N. Sherratt
Software Mentions: 5
Published: about 7 years ago

10.1111/irv.12772

Comparative epidemiology, phylogenetics, and transmission patterns of severe influenza A/H3N2 in Australia from 2003 to 2017
Cited by: 1
Author(s): Jing Xia, Dillon C. Adam, Aye Moa, Abrar Ahmad Chughtai, Ian G. Barr, Naomi Komadina, C. Raina MacIntyre
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pntd.0008235

Persistence of Brucella abortus lineages revealed by genomic characterization and phylodynamic analysis
Cited by: 11
Author(s): Marcela Suárez-Esquivel, Gabriela Hernández-Mora, Nazareth Ruíz-Villalobos, Elías Barquero-Calvo, Carlos Chacón-Díaz, Jason T. Ladner, Gerardo Oviedo-Sánchez, Jeffrey T. Foster, Norman Rojas‐Campos, Esteban Chaves-Olarte, Nicholas R. Thomson, Edgardo Moreno, Caterina Guzmán-Verri
Software Mentions: 4
Published: over 4 years ago

10.1002/2211-5463.12275

In silico analysis of heme oxygenase structural homologues identifies group‐specific conservations
Cited by: 1
Author(s): J. Logan Irvin, Alexander J. Ropelewski, John Perozich
Software Mentions: 4
Published: about 7 years ago

10.1099/mgen.0.000039

Whole-genome sequencing investigation of animal-skin-drum-associated UK anthrax cases reveals evidence of mixed populations and relatedness to a US case
Cited by: 9
Author(s): Steven T. Pullan, Talima Pearson, Jennie Latham, Joanne Mason, Barry Atkinson, Nigel Silman, Chung K. Marston, Jason W. Sahl, Dawn N. Birdsell, Alex R. Hoffmaster, Paul Keim, Richard Vipond
Software Mentions: 4
Published: almost 9 years ago

10.1002/ece3.4360

RAD sequencing resolved phylogenetic relationships in European shrub willows (SalixL. subg.Chamaetiaand subg.Vetrix) and revealed multiple evolution of dwarf shrubs
Cited by: 31
Author(s): Natascha D. Wagner, S.M. Gramlich, Elvira Hörandl
Software Mentions: 4
Published: about 6 years ago

10.1111/jbi.13525

Ancestral range reconstruction of remote oceanic island species of Plantago (Plantaginaceae) reveals differing scales and modes of dispersal
Cited by: 20
Author(s): Natalie Iwanycki Ahlstrand, Brecht Verstraete, Gustavo Hassemer, Stephanie Dunbar-Co, Ronald K. Hoggard, Heidi M. Meudt, Nina Rønsted
Software Mentions: 4
Published: over 5 years ago

10.1111/jeb.12022

Loss of genetic variability in social spiders: genetic and phylogenetic consequences of population subdivision and inbreeding
Cited by: 33
Author(s): Ingi Agnarsson, Leticia Avilés, Wayne P. Maddison
Software Mentions: 4
Published: almost 12 years ago

10.3389/fpls.2018.01864

Revisiting the Soybean GmNAC Superfamily
Cited by: 37
Author(s): Bruno Paes de Melo, Otto Teixeira Fraga, José Cleydson Ferreira da Silva, Dalton O Ferreira, Otávio J. B. Brustolini, Paola A. Carpinetti, João Paulo Machado, Pedro A. B. Reis, Elizabeth P. B. Fontes
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-021-07447-y

Detection of subgenome bias using an anchored syntenic approach in Eleusine coracana (finger millet)
Cited by: 2
Author(s): Nathan Hall, Jinesh Patel, J. Scott McElroy, Leslie R. Goertzen
Software Mentions: 3
Published: over 3 years ago

10.1186/s12862-019-1397-0

Phylogeography of Bellamya (Mollusca: Gastropoda: Viviparidae) snails on different continents: contrasting patterns of diversification in China and East Africa
Cited by: 14
Author(s): Qianbiao Gu, Martin Husemann, Hao Wu, Jing Dong, Chuan J. Zhou, Xian F. Wang, Yun N. Gao, Man Zhang, Guo R. Zhu, Guo Xing Nie
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.2393

Phylogeographic structure in long‐tailed voles (Rodentia: Arvicolinae) belies the complex Pleistocene history of isolation, divergence, and recolonization of Northwest North America's fauna
Cited by: 10
Author(s): Yadéeh E. Sawyer, Joseph A. Cook
Software Mentions: 3
Published: about 8 years ago

10.3390/v13071412

Phylogenetic Analysis of Massilia phlebovirus in Portugal
Cited by: 8
Author(s): Fátima Amaro, Líbia Zé-Zé, José Lourenço, Marta Giovanetti, Stefanie Becker, Maria João Alves
Software Mentions: 3
Published: about 3 years ago

10.7554/eLife.19466

Origin and evolution of transporter substrate specificity within the NPF family
Cited by: 78
Author(s): Morten Jørgensen, Deyang Xu, Christoph Crocoll, Heidi A. Ernst, David Ramírez, Mohammed Saddik Motawia, Carl Erik Olsen, Osman Mirza, Hussam Hassan Nour-Eldin
Software Mentions: 3
Published: over 7 years ago

10.1038/srep24041

Contributions of historical and contemporary geographic and environmental factors to phylogeographic structure in a Tertiary relict species, Emmenopterys henryi (Rubiaceae)
Cited by: 39
Author(s): Yonghua Zhang, Ian Wang, Hans Peter Comes, Hua Peng, Ying‐Xiong Qiu
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-021-93495-z

The first draft genome of Picrorhiza kurrooa, an endangered medicinal herb from Himalayas
Cited by: 6
Author(s): Tanvi Sharma, Nitesh Kumar Sharma, Prakash P. Kumar, Ganesh Panzade, Tanuja Rana, Mohit Kumar Swarnkar, Anil Kumar Singh, Dharam Singh, Ravi Shankar, Sanjay Kumar
Software Mentions: 3
Published: about 3 years ago

10.1186/s12864-017-4062-2

High-density 80 K SNP array is a powerful tool for genotyping G. hirsutum accessions and genome analysis
Cited by: 71
Author(s): Caiping Cai, Guozhong Zhu, Tianzhen Zhang, Wenshan Guo
Software Mentions: 3
Published: about 7 years ago

10.3390/insects10070209

Phylogenomic Analyses Clarify True Species within the Butterfly Genus Speyeria despite Evidence of a Recent Adaptive Radiation
Cited by: 3
Author(s): Erin Rebecca Thompson, Jason Baumsteiger, Ryan I. Hill
Software Mentions: 3
Published: about 5 years ago

10.1111/irv.12715

Toward unified molecular surveillance of RSV: A proposal for genotype definition
Cited by: 39
Author(s): Stephanie Goya, Mónica Galiano, Inne Nauwelaers, Alfonsina Trento, Peter Openshaw, Alicia Mistchenko, Maria Zambon, Mariana Viegas
Software Mentions: 3
Published: over 4 years ago

10.1038/srep42158

Effect of domestication on the genetic diversity and structure of Saccharina japonica populations in China
Cited by: 32
Author(s): Jie Zhang, Xiuliang Wang, Jianting Yao, Qiuying Li, Fuli Liu, Norishige Yotsukura, Tatiana N. Krupnova, Delin Duan
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-019-6123-1

Comparative genomic analysis of the Hafnia genus reveals an explicit evolutionary relationship between the species alvei and paralvei and provides insights into pathogenicity
Cited by: 19
Author(s): Zhiqiu Yin, Chao Yuan, Yuhui Du, Yang Pan, Chengqian Qian, Wei Yi, Si Zhang, Di Huang, Bin Liu
Software Mentions: 2
Published: almost 5 years ago

10.1002/2211-5463.12715

Biochemical and structural characterization of tyrosine aminotransferase suggests broad substrate specificity and a two‐state folding mechanism in Leishmania donovani
Cited by: 17
Author(s): Santanu Sasidharan, Prakash Saudagar
Software Mentions: 2
Published: about 5 years ago

10.1002/2211-5463.12022

Analysis of nucleotide diphosphate sugar dehydrogenases reveals family and group‐specific relationships
Cited by: 4
Author(s): Nicholas Freas, Peter W. Newton, John Perozich
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2020.581313

The Mosaic Architecture of NRPS-PKS in the Arbuscular Mycorrhizal Fungus Gigaspora margarita Shows a Domain With Bacterial Signature
Cited by: 7
Author(s): Francesco Venice, Alessandro Desirò, Gladstone Alves da Silva, Alessandra Salvioli, Paola Bonfante
Software Mentions: 2
Published: almost 4 years ago

10.3390/molecules24234338

PpNAC187 Enhances Lignin Synthesis in ‘Whangkeumbae’ Pear (Pyrus pyrifolia) ‘Hard-End’ Fruit
Cited by: 16
Author(s): Mingtong Li, Chenxia Cheng, Xin Fu Zhang, Suping Zhou, Caihong Wang, Chunhui Ma, Shaolan Yang
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13059-014-0546-4

Organization and evolution of transposable elements along the bread wheat chromosome 3B
Cited by: 82
Author(s): Josquin Daron, Natasha Glover, Lise Pingault, Sébastien Theil, Véronique Jamilloux, Etienne Paux, Valérie Barbe, Sophie Mangenot, Adriana Alberti, Patrick Wincker, Hadi Quesneville, Catherine Feuillet, Frédéric Choulet
Software Mentions: 2
Published: almost 10 years ago

10.3390/molecules22061015

Repositioning FDA Drugs as Potential Cruzain Inhibitors from Trypanosoma cruzi: Virtual Screening, In Vitro and In Vivo Studies
Cited by: 33
Author(s): Isidro Palos, Edgar E. Lara-Ramírez, Julio Cesar López-Cedillo, Carlos A. García-Pérez, Muhammad Kashif, Virgilio Bocanegra-García, Benjamín Nogueda‐Torres, Gildardo Rivera
Software Mentions: 2
Published: about 7 years ago

10.1186/s12859-017-1646-4

Geminivirus data warehouse: a database enriched with machine learning approaches
Cited by: 24
Author(s): José Cleydson Ferreira da Silva, Thales Francisco Mota Carvalho, Marcos Fernando Basso, Michihito Deguchi, Welison Andrade Pereira, Roberto Ramos Sobrinho, Pedro Marcus Pereira Vidigal, Otávio J. B. Brustolini, Fabyano F. Silva, Maximiller Dal-Bianco, Renildes Lúcio Ferreira Fontes, Anésia A. Santos, F. Murilo Zerbini, Fábio Ribeiro Cerqueira, Elizabeth P. B. Fontes
Software Mentions: 2
Published: over 7 years ago

10.3390/v12020243

Letea Virus: Comparative Genomics and Phylogenetic Analysis of a Novel Reassortant Orbivirus Discovered in Grass Snakes (Natrix natrix)
Cited by: 12
Author(s): Alexandru Tomazatos, Rachel E. Marschang, Iulia Maranda, Heike von Baum, Alexandra Bialonski, Marina Spînu, Renke Lühken, Jonas Schmidt‐Chanasit, Dániel Cadar
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-018-24341-y

Deciphering the mechanism of action of 089, a compound impairing the fungal cell cycle
Cited by: 6
Author(s): Irene Stefanini, Lisa Rizzetto, Damaríz Rivero, Sílvia Carbonell, Marta Gut, Simon Heath, Andrea Trabocchi, Antonio Guarna, Nagwa Ben Ghazzi, Paul Bowyer, Misha Kapushesky, Duccio Cavalieri
Software Mentions: 2
Published: over 6 years ago

10.3897/zookeys.820.29632

The identity of the Sri Lankan Amblypharyngodon (Teleostei, Cyprinidae)
Cited by: 7
Author(s): Hiranya Sudasinghe, Rohan Pethiyagoda, Kalana Maduwage, Madhava Meegaskumbura
Software Mentions: 2
Published: over 5 years ago

10.1186/1756-3305-5-161

Molecular characterization of the hexose transporter gene in benznidazole resistant and susceptible populations of Trypanosoma cruzi
Cited by: 5
Author(s): Paula Fernandes dos Santos, Jerônimo C. Ruiz, Rodrigo Pedro Soares, Douglas S. Moreira, Antônio Mauro Rezende, Edson Luiz Folador, Guilherme Oliveira, Álvaro J. Romanha, Silvane Maria Fonseca Murta
Software Mentions: 2
Published: about 12 years ago

10.1186/s12862-018-1276-0

The crowns have eyes: multiple opsins found in the eyes of the crown-of-thorns starfish Acanthaster planci
Cited by: 13
Author(s): Elijah K. Lowe, Anders Garm, Esther Ullrich-Lüter, Claudia Cuomo, Maria Ina Arnone
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms19103192

Transcriptome Profiling of Two Ornamental and Medicinal Papaver Herbs
Cited by: 8
Author(s): Jae-Hyeon Oh, Younhee Shin, In-Joong Ha, Min Young Lee, Seok‐Geun Lee, Byeong-Chul Kang, Dongsoo Kyeong, Dowan Kim
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms20040988

FTIR and Raman Spectroscopy-Based Biochemical Profiling Reflects Genomic Diversity of Clinical Candida Isolates That May Be Useful for Diagnosis and Targeted Therapy of Candidiasis
Cited by: 19
Author(s): Leszek Potocki, Joanna Depciuch, Ewelina Kuna, Mariusz Worek, Anna Lewińska, Maciej Wnuk
Software Mentions: 2
Published: over 5 years ago

10.1111/1751-7915.13428

Identification and expression of the 11β‐steroid hydroxylase fromCochliobolus lunatusinCorynebacterium glutamicum
Cited by: 15
Author(s): Carmen Felpeto-Santero, Beatriz Galán, José M. Luengo, José Manuel Fernández-Cañón, Carlos del Cerro, F.J. Medrano, José Luis Garcı́a
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0182097

Similarities between plant traits based on their connection to underlying gene functions
Cited by: 0
Author(s): Jan-Peter Nap, Gabino F. Sánchez-Pérez, Aalt D. J. van Dijk
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0134824

Transcriptome Analysis of the Emerald Ash Borer (EAB), Agrilus planipennis: De Novo Assembly, Functional Annotation and Comparative Analysis
Cited by: 9
Author(s): Jun Duan, Tim R. Ladd, Daniel Doucet, Michel Cusson, Kees vanFrankenhuyzen, Omprakash Mittapalli, Peter J. Krell, Guoxing Quan
Software Mentions: 2
Published: about 9 years ago

10.1002/ccr3.1442

A case of methicillin-resistant Staphylococcus aureus wound infection: phylogenetic analysis to establish if nosocomial or community acquired
Cited by: 6
Author(s): Francesco Cancilleri, Massimo Ciccozzi, Marta Fogolari, Eleonora Cocco, Lucía Florio, Alessandra Berton, Giuseppe Salvatore, Giordano Dicuonzo, Silvia Spoto, Vincenzo Denaro, Silvia Angeletti
Software Mentions: 1
Published: over 6 years ago

10.1186/s12862-021-01906-6

Wolbachia-driven selective sweep in a range expanding insect species
Cited by: 5
Author(s): Junchen Deng, Giacomo Assandri, Pallavi Chauhan, Ryo Futahashi, Andrea Galimberti, Bengt Hansson, Lesley T. Lancaster, Yuma Takahashi, Erik I. Svensson, Anne Duplouy
Software Mentions: 1
Published: almost 3 years ago

10.1186/s12862-014-0206-z

Global distribution of Chelonid fibropapilloma-associated herpesvirus among clinically healthy sea turtles
Cited by: 58
Author(s): Alonzo Alfaro-Núñez, Mads F. Bertelsen, Anders Miki Bojesen, Isabel Rasmussen, Marie Lisandra Zepeda Mendoza, Morten Tange Olsen, M. Thomas P. Gilbert
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2164-11-444

Chiropteran types I and II interferon genes inferred from genome sequencing traces by a statistical gene-family assembler
Cited by: 43
Author(s): Thomas B. Kepler, Christopher Sample, Kathryn Hudak, Jeffrey Roach, Albert Haines, Allyson Walsh, Elizabeth Ramsburg
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2180-12-72

Corynebacterium ulcerans 0102 carries the gene encoding diphtheria toxin on a prophage different from the C. diphtheriae NCTC 13129 prophage
Cited by: 41
Author(s): Tsuyoshi Sekizuka, Akihiko Yamamoto, Takako Komiya, Tsuyoshi Kenri, Fumihiko Takeuchi, Keigo Shibayama, Motohide Takahashi, Makoto Kuroda, Masaaki Iwaki
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2180-9-199

High-level chromate resistance in Arthrobacter sp. strain FB24 requires previously uncharacterized accessory genes
Cited by: 68
Author(s): Kristene L. Henne, Cindy H. Nakatsu, Danielle Thompson, Allan Konopka
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2229-10-255

Phylogenetic relationships in genus Arachis based on ITS and 5.8S rDNA sequences
Cited by: 39
Author(s): Marcelo Dib Bechara, Márcio de Carvalho Moretzsohn, Darío Abel Palmieri, J. P. Monteiro, Maurício Bacci, Joaquim Martins, José Francisco Montenegro Valls, Catalina Romero Lopes, Marcos Aparecido Gimenes
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12870-017-1001-y

The essence of NAC gene family to the cultivation of drought-resistant soybean (Glycine max L. Merr.) cultivars
Cited by: 69
Author(s): Reem M Hussain, Mohammed Ali, Xing Feng, Xia Li
Software Mentions: 1
Published: over 7 years ago

10.1093/bioinformatics/btx155

IcyTree: rapid browser-based visualization for phylogenetic trees and networks
Cited by: 82
Author(s): Timothy G. Vaughan
Software Mentions: 1
Published: over 7 years ago

10.3390/biology9030061

MYB Transcription Factors as Regulators of Secondary Metabolism in Plants
Cited by: 96
Author(s): Yunpeng Cao, Kui Li, Yanli Li, Xiaopei Zhao, Wang Li-hu
Software Mentions: 1
Published: over 4 years ago

10.1111/mmi.14370

The plant pathogen Pectobacterium atrosepticum contains a functional formate hydrogenlyase‐2 complex
Cited by: 7
Author(s): Alexander J. Finney, Rebecca Lowden, Michal Fleszar, Marta Albareda, Sarah J. Coulthurst, Frank Sargent
Software Mentions: 1
Published: about 5 years ago

10.3897/mycokeys.77.59852

Morphological and molecular identification of Diaporthe species in south-western China, with description of eight new species
Cited by: 15
Author(s): Wenxiu Sun, Shengting Huang, Ji-Wen Xia, Xiuguo Zhang, Zhuang Li
Software Mentions: 1
Published: over 3 years ago

10.3897/mycokeys.78.60878

Morphological and phylogenetic analyses reveal three new species of Diaporthe from Yunnan, China
Cited by: 15
Author(s): Shengting Huang, Ji-Wen Xia, Xiuguo Zhang, Wenxiu Sun
Software Mentions: 1
Published: over 3 years ago

10.3897/mycokeys.72.55445

Two new species of Microdochium from Indocalamus longiauritus in south-western China
Cited by: 4
Author(s): Shengting Huang, Ji-Wen Xia, Xiuguo Zhang, Wenxiu Sun, Zhuang Li
Software Mentions: 1
Published: about 4 years ago

10.1111/pbi.12521

Haplotype hitchhiking promotes trait coselection inBrassica napus
Cited by: 20
Author(s): Lunwen Qian, Wei Qian, Rod J. Snowdon
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pgen.1005369

AAA-ATPase FIDGETIN-LIKE 1 and Helicase FANCM Antagonize Meiotic Crossovers by Distinct Mechanisms
Cited by: 121
Author(s): Chloé Girard, Liudmila Chelysheva, Sandrine Choinard, Nicole Froger, Nicolas Macaisne, Afef Lehmemdi, Julien Mazel, Wayne Crismani, Raphaël Mercier
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0209336

Rapid birth-death evolution and positive selection in detoxification-type glutathione S-transferases in mammals
Cited by: 12
Author(s): Hui Ming Tan, Wai Yee Low
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0173464

Whole-genome analysis of mycobacteria from birds at the San Diego Zoo
Cited by: 16
Author(s): Wayne Pfeiffer, Joséphine Braun, Jennifer Burchell, Carmel Witte, Bruce A. Rideout
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0193626

Genetic diversity of drug and multidrug-resistant Mycobacterium tuberculosis circulating in Veracruz, Mexico
Cited by: 12
Author(s): Daniela Munro-Rojas, Esdras Fernandez-Morales, José Zarrabal-Meza, Ma. Teresa Martínez-Cazares, Aurora Parissi-Crivelli, Javier Fuentes-Domínguez, Marie Nancy Séraphin, Michael Lauzardo, Jorge A. González-y-Merchand, Sandra Rivera-Gutiérrez, Roberto Zenteno-Cuevas
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0097180

Near-Complete Genome Sequencing of Swine Vesicular Disease Virus Using the Roche GS FLX Sequencing Platform
Cited by: 3
Author(s): Sandra C. A. Nielsen, Christian Bruhn, José A. Samaniego, Jemma Wadsworth, Nick J. Knowles, M. Thomas P. Gilbert
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0176468

Correction: Helicobacter pylori bab Paralog Distribution and Association with cagA, vacA, and homA/B Genotypes in American and South Korean Clinical Isolates
Cited by: 0
Author(s): Aeryun Kim, Stephanie L. Servetas, Jieun Kang, Jinmoon Kim, Sungil Jang, Jin Huang, Wan Jin Lee, June Kim, Judith Romero–Gallo, Richard M. Peek, D. Scott Merrell, Jeong Heon
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0097043

Two Novel Anoxia-Induced Ethylene Response Factors That Interact with Promoters of Deastringency-Related Genes from Persimmon
Cited by: 48
Author(s): Ting Min, Fang Fang, Hang Ge, Yanna Shi, Zhengrong Luo, Yuncong Yao, Donald Grierson, Yin X, Kunsong Chen
Software Mentions: 1
Published: over 10 years ago

10.1186/s12981-017-0135-1

H1N1 influenza vaccination in HIV-infected women on effective antiretroviral treatment did not induce measurable antigen-driven proliferation of the HIV-1 proviral reservoir
Cited by: 1
Author(s): Thor A. Wagner, Hannah C. Huang, Christen E Salyer, Kelly Richardson, Adriana Weinberg, Sharon Nachman, Lisa M. Frenkel
Software Mentions: 1
Published: over 7 years ago

10.1016/j.csbj.2019.02.005

Unveiling the Kinomes of Leishmania infantum and L. braziliensis Empowers the Discovery of New Kinase Targets and Antileishmanial Compounds
Cited by: 13
Author(s): Joyce Villa Verde Bastos Borba, Arthur C. Silva, Pablo Ivan Pereira Ramos, Nathalia Grazzia, Danilo C. Miguel, Eugene Muratov, Nicholas Furnham, Carolina Horta Andrade
Software Mentions: 1
Published: over 5 years ago

10.1016/j.dib.2020.106077

Dataset on the epidemiology and genetic diversification of dengue virus (DENV) serotypes and genotypes in Mexico
Cited by: 1
Author(s): Eduardo Domínguez-de-la-Cruz, Marı́a de Lourdes Muñoz, Ericel Hernández-García, Gerardo Pérez-Ramírez, Randy E. David, Joel Navarrete-Espinosa, Álvaro Díaz-Badillo, Miguel Moreno-Galeana, Cesar Armando Brito-Carreón
Software Mentions: 1
Published: almost 4 years ago

10.1038/emi.2016.122

Insights into the evolution of pathogenicity of Escherichia coli from genomic analysis of intestinal E. coli of Marmota himalayana in Qinghai–Tibet plateau of China
Cited by: 31
Author(s): Shan Lu, Dong Jin, Shusheng Wu, Jing Yang, Ruiting Lan, Xiangning Bai, Sha Li, Qiong Meng, Xuejiao Yuan, Jia-Rong Zhou, Ji Pu, Qiang Chen, Hongyue Dai, Yuanyuan Hu, Yanwen Xiong, Changyun Ye, Jianguo Xu
Software Mentions: 1
Published: over 8 years ago

10.3389/fendo.2019.00831

Global Neuropeptide Annotations From the Genomes and Transcriptomes of Cubozoa, Scyphozoa, Staurozoa (Cnidaria: Medusozoa), and Octocorallia (Cnidaria: Anthozoa)
Cited by: 22
Author(s): Thomas Lund Koch, Cornelis J.P. Grimmelikhuijzen
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpls.2020.571618

North-Western Himalayan Common Beans: Population Structure and Mapping of Quantitative Anthracnose Resistance Through Genome Wide Association Study
Cited by: 22
Author(s): Aqleema Banoo, Asha Nabi, Rovidha Saba Rasool, Mahiya-Farooq, M. G. Shah, Mushtaq Ahmad, Parvaze A. Sofi, Aasiya-Nabi, Hamidullah Itoo, Prem N. Sharma, Bilal A. Padder
Software Mentions: 1
Published: almost 4 years ago

10.3390/genes11040389

Evolution of Predicted Acid Resistance Mechanisms in the Extremely Acidophilic Leptospirillum Genus
Cited by: 20
Author(s): Eva Vergara, Gonzalo Neira, Carolina González, Diego Cortez, Mark Dopson, David S. Holmes
Software Mentions: 1
Published: over 4 years ago

10.1016/j.heliyon.2020.e04715

Discovery and characterisation of circular bacteriocin plantacyclin B21AG from Lactiplantibacillus plantarum B21
Cited by: 31
Author(s): Aida Golneshin, Mian Chee Gor, Nicholas A. Williamson, Ben Vezina, Thi Thu Hao Van, Bee K. May, Andrew T. Smith
Software Mentions: 1
Published: about 4 years ago

10.3390/jcm10102092

Clinical Relevance of Torque Teno Virus (TTV) in HIV/HCV Coinfected and HCV Monoinfected Patients Treated with Direct-Acting Antiviral Therapy
Cited by: 4
Author(s): Daniele Lapa, Paola Del Porto, Claudia Minosse, Gianpiero D’Offizi, Andrea Antinori, Maria Rosaria Capobianchi, Ubaldo Visco-Comandini, Fiona McPhee, Anna Rosa Garbuglia, Mauro Zaccarelli
Software Mentions: 1
Published: over 3 years ago

10.1038/srep17588

Massive gene loss in mistletoe (Viscum, Viscaceae) mitochondria
Cited by: 86
Author(s): Gitte Petersen, Argelia Cuenca, Ian Max Møller, Ole Seberg
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep27168

Whole-genome resequencing of honeybee drones to detect genomic selection in a population managed for royal jelly
Cited by: 31
Author(s): David Wragg, Maria Marti-Marimon, Benjamin Basso, Jean Pierre Bidanel, Emmanuelle Labarthe, Olivier Bouchez, Yves Le Conte, Alain Vignal
Software Mentions: 1
Published: over 8 years ago

10.1038/srep34964

SOXE neofunctionalization and elaboration of the neural crest during chordate evolution
Cited by: 15
Author(s): Andrew Tai, Martin Cheung, Yong-Heng Huang, Ralf Jauch, Marianne Bronner‐Fraser, Kathryn S.E. Cheah
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep44331

Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue
Cited by: 6
Author(s): Hela El Kafsi, Valentin Loux, Mahendra Mariadassou, Camille Blin, Hélène Chiapello, Anne-Laure Abraham, Emmanuelle Maguin, Maarten van de Guchte
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-43560-5

Multiple Lineages of Dengue Virus Serotype 2 Cosmopolitan Genotype Caused a Local Dengue Outbreak in Hangzhou, Zhejiang Province, China, in 2017
Cited by: 12
Author(s): Hua Yu, Qingxin Kong, Jing Wang, Xiaofeng Qiu, Yuanyuan Wen, Xinliang Yu, Muwen Liu, Haoqiu Wang, Jinren Pan, Sun Zhou
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-65588-8

Allelic sequence variation in the Sub1A, Sub1B and Sub1C genes among diverse rice cultivars and its association with submergence tolerance
Cited by: 12
Author(s): Anuradha Singh, Yogendra Singh, Ajay Kumar Mahato, Pawan Kumar Jayaswal, S. P. Singh, Renu Singh, Neera Yadav, Amit Kumar Singh, Preeti Singh, Rakesh Singh, Rajesh Kumar, Endang M. Septiningsih, H. S. Balyan, Nagendra Singh, Vandna Rai
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-93630-w

Biscogniauxia rosacearum the charcoal canker agent as a pathogen associated with grapevine trunk diseases in Zagros region of Iran
Cited by: 12
Author(s): Zeinab Bahmani, Jafar Abdollahzadeh, Jahanshir Amini, Antonio Evidente
Software Mentions: 1
Published: about 3 years ago

10.1128/mBio.01976-16

Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland
Cited by: 86
Author(s): Danesh Moradigaravand, Véronique Martin, Sharon J. Peacock, Julian Parkhill
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.00950-17

A Plastid Protein That Evolved from Ubiquitin and Is Required for Apicoplast Protein Import in Toxoplasma gondii
Cited by: 24
Author(s): Justin D. Fellows, Michael J. Cipriano, Swati Agrawal, Boris Striepen
Software Mentions: 1
Published: about 7 years ago

10.3390/jof7040287

Improvement of Torulaspora delbrueckii Genome Annotation: Towards the Exploitation of Genomic Features of a Biotechnologically Relevant Yeast
Cited by: 10
Author(s): Carolina Rivera Santiago, Teresa Rito, Daniel Vieira, Ticiana Fernandes, Célia Pais, Maria João Sousa, Pedro Soares, Ricardo Franco-Duarte
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms16011894

Isolation and Expression of NAC Genes during Persimmon Fruit Postharvest Astringency Removal
Cited by: 18
Author(s): Ting Min, Miaomiao Wang, Hongxun Wang, Xiaofen Liu, Fang Fang, Donald Grierson, Yin X, Kunsong Chen
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms20051045

Complete Chloroplast Genomes and Comparative Analysis of Sequences Evolution among Seven Aristolochia (Aristolochiaceae) Medicinal Species
Cited by: 34
Author(s): Xiaoqin Li, Yunjuan Zuo, Xin‐Xin Zhu, Shuai Liao, Jinshuang Ma
Software Mentions: 1
Published: over 5 years ago

Projects: pypi: figtree

Papers Mentioning figtree 100