Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

cran projects 6,234

cran: DT
A Wrapper of the JavaScript Library 'DataTables'
Papers that mentioned: 74
cran: RCircos
Circos 2D Track Plot
Papers that mentioned: 74
cran: sjstats
Collection of Convenient Functions for Common Statistical Computations
Papers that mentioned: 74
cran: PredictABEL
Assessment of Risk Prediction Models
Papers that mentioned: 74
cran: MALDIquant
Quantitative Analysis of Mass Spectrometry Data
Papers that mentioned: 74
cran: flashClust
Implementation of optimal hierarchical clustering
Papers that mentioned: 74
cran: jagsUI
A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses
Papers that mentioned: 73
cran: qpcR
Modelling and Analysis of Real-Time PCR Data
Papers that mentioned: 73
cran: ProFound
Photometry Tools
Papers that mentioned: 73
cran: BoolNet
Construction, Simulation and Analysis of Boolean Networks
Papers that mentioned: 73
cran: BayesX
R Utilities Accompanying the Software Package BayesX
Papers that mentioned: 72
cran: ICC
Facilitating Estimation of the Intraclass Correlation Coefficient
Papers that mentioned: 72
cran: poLCA
Polytomous Variable Latent Class Analysis
Papers that mentioned: 72
cran: maxstat
Maximally Selected Rank Statistics
Papers that mentioned: 72
cran: adehabitatLT
Analysis of Animal Movements
Papers that mentioned: 72
cran: tensorflow
R Interface to 'TensorFlow'
Papers that mentioned: 71
cran: DECIDE
DEComposition of Indirect and Direct Effects
Papers that mentioned: 71
cran: GPM
Gaussian Process Modeling of Multi-Response and Possibly Noisy Datasets
Papers that mentioned: 71
cran: ggcorrplot
Visualization of a Correlation Matrix using 'ggplot2'
Papers that mentioned: 71
cran: WRS2
A Collection of Robust Statistical Methods
Papers that mentioned: 71
cran: DOPE
Drug Ontology Parsing Engine
Papers that mentioned: 71
cran: PAC
Partition-Assisted Clustering and Multiple Alignments of Networks
Papers that mentioned: 71
cran: rstanarm
Bayesian Applied Regression Modeling via Stan
Papers that mentioned: 70
cran: rmcorr
Repeated Measures Correlation
Papers that mentioned: 70
cran: ER
Effect + Residual Modelling
Papers that mentioned: 70
cran: js
Tools for Working with JavaScript in R
Papers that mentioned: 69
cran: msm
Multi-State Markov and Hidden Markov Models in Continuous Time
Papers that mentioned: 69
cran: ggthemes
Extra Themes, Scales and Geoms for 'ggplot2'
Papers that mentioned: 69
cran: scatterplot3d
3D Scatter Plot
Papers that mentioned: 69
cran: BMA
Bayesian Model Averaging
Papers that mentioned: 69
cran: COST
Copula-Based Semiparametric Models for Spatio-Temporal Data
Papers that mentioned: 69
cran: bootnet
Bootstrap Methods for Various Network Estimation Routines
Papers that mentioned: 69
cran: OptimalCutpoints
Computing Optimal Cutpoints in Diagnostic Tests
Papers that mentioned: 68
cran: missMDA
Handling Missing Values with Multivariate Data Analysis
Papers that mentioned: 68
cran: sna
Tools for Social Network Analysis
Papers that mentioned: 67
cran: mvtnorm
Multivariate Normal and t Distributions
Papers that mentioned: 67
cran: multcompView
Visualizations of Paired Comparisons
Papers that mentioned: 66
cran: CMC
Cronbach-Mesbah Curve
Papers that mentioned: 66
cran: logistf
Firth's Bias-Reduced Logistic Regression
Papers that mentioned: 66
cran: LDheatmap
Graphical Display of Pairwise Linkage Disequilibria Between SNPs
Papers that mentioned: 66
cran: statnet
Software Tools for the Statistical Analysis of Network Data
Papers that mentioned: 66
cran: TAG
Transformed Additive Gaussian Processes
Papers that mentioned: 66
cran: Grace
Graph-Constrained Estimation and Hypothesis Tests
Papers that mentioned: 65
cran: QCA
Qualitative Comparative Analysis
Papers that mentioned: 65
cran: SMR
Externally Studentized Midrange Distribution
Papers that mentioned: 65
cran: lmodel2
Model II Regression
Papers that mentioned: 65
cran: Clustering
Techniques for Evaluating Clustering
Papers that mentioned: 65
cran: SMC
Papers that mentioned: 65
cran: ggsignif
Significance Brackets for 'ggplot2'
Papers that mentioned: 64
cran: doBy
Groupwise Statistics, LSmeans, Linear Estimates, Utilities
Papers that mentioned: 64
cran: segmented
Regression Models with Break-Points / Change-Points (with Possibly Random Effects) Estimation
Papers that mentioned: 64
cran: languageR
Analyzing Linguistic Data: A Practical Introduction to Statistics
Papers that mentioned: 64
cran: VIM
Visualization and Imputation of Missing Values
Papers that mentioned: 64
cran: pcadapt
Fast Principal Component Analysis for Outlier Detection
Papers that mentioned: 64
cran: mlr
Machine Learning in R
Papers that mentioned: 64
cran: Cascade
Selection, Reverse-Engineering and Prediction in Cascade Networks
Papers that mentioned: 64
cran: Select
Determines Species Probabilities Based on Functional Traits
Papers that mentioned: 64
cran: BART
Bayesian Additive Regression Trees
Papers that mentioned: 63
cran: pamr
Pam: Prediction Analysis for Microarrays
Papers that mentioned: 63
cran: AER
Applied Econometrics with R
Papers that mentioned: 63
cran: clValid
Validation of Clustering Results
Papers that mentioned: 62
cran: PopGenome
An Efficient Swiss Army Knife for Population Genomic Analyses
Papers that mentioned: 62
cran: ecospat
Spatial Ecology Miscellaneous Methods
Papers that mentioned: 62
cran: vcfR
Manipulate and Visualize VCF Data
Papers that mentioned: 62
cran: CORE
Cores of Recurrent Events
Papers that mentioned: 62
cran: Storm
Write Storm Bolts in R using the Storm Multi-Language Protocol
Papers that mentioned: 62
cran: glmmML
Generalized Linear Models with Clustering
Papers that mentioned: 60
cran: latticeExtra
Extra Graphical Utilities Based on Lattice
Papers that mentioned: 60
cran: BAT
Biodiversity Assessment Tools
Papers that mentioned: 60
cran: exactRankTests
Exact Distributions for Rank and Permutation Tests
Papers that mentioned: 60
cran: EpiEstim
Estimate Time Varying Reproduction Numbers from Epidemic Curves
Papers that mentioned: 60
cran: enrichR
Provides an R Interface to 'Enrichr'
Papers that mentioned: 60
cran: HRM
High-Dimensional Repeated Measures
Papers that mentioned: 60
cran: gtools
Various R Programming Tools
Papers that mentioned: 60
cran: XML
Tools for Parsing and Generating XML Within R and S-Plus
Papers that mentioned: 60
cran: MTA
Multiscalar Territorial Analysis
Papers that mentioned: 59
cran: plotROC
Generate Useful ROC Curve Charts for Print and Interactive Use
Papers that mentioned: 59
cran: AntWeb
programmatic interface to the AntWeb
Papers that mentioned: 59
cran: MBESS
The MBESS R Package
Papers that mentioned: 59
cran: ABACUS
Apps Based Activities for Communicating and Understanding Statistics
Papers that mentioned: 58
cran: ggraph
An Implementation of Grammar of Graphics for Graphs and Networks
Papers that mentioned: 58
cran: AMPLE
Shiny Apps to Support Capacity Building on Harvest Control Rules
Papers that mentioned: 58
cran: MixSIAR
Bayesian Mixing Models in R
Papers that mentioned: 58
cran: StAMPP
Statistical Analysis of Mixed Ploidy Populations
Papers that mentioned: 58
cran: OneR
One Rule Machine Learning Classification Algorithm with Enhancements
Papers that mentioned: 58
cran: MESS
Miscellaneous Esoteric Statistical Scripts
Papers that mentioned: 57
cran: semPlot
Path Diagrams and Visual Analysis of Various SEM Packages' Output
Papers that mentioned: 57
cran: SCAT
Summary Based Conditional Association Test
Papers that mentioned: 57
cran: RobustRankAggreg
Methods for Robust Rank Aggregation
Papers that mentioned: 57
cran: ggalluvial
Alluvial Plots in 'ggplot2'
Papers that mentioned: 57
cran: rehh
Searching for Footprints of Selection using 'Extended Haplotype Homozygosity' Based Tests
Papers that mentioned: 57
cran: SIGN
Similarity Identification in Gene Expression
Papers that mentioned: 57
cran: fastICA
FastICA Algorithms to Perform ICA and Projection Pursuit
Papers that mentioned: 56
cran: pec
Prediction Error Curves for Risk Prediction Models in Survival Analysis
Papers that mentioned: 56
cran: ACA
Abrupt Change-Point or Aberration Detection in Point Series
Papers that mentioned: 56
cran: gProfileR
Interface to the 'g:Profiler' Toolkit
Papers that mentioned: 56
cran: corrgram
Plot a Correlogram
Papers that mentioned: 56
cran: Metrics
Evaluation Metrics for Machine Learning
Papers that mentioned: 56
cran: SuperLearner
Super Learner Prediction
Papers that mentioned: 56
cran: SID
Structural Intervention Distance
Papers that mentioned: 56