cran: BMA | Projects | Ecosyste.ms: Papers

10.1186/s12889-021-11065-4

Who or what is to blame? Examining sociodemographic relationships to beliefs about causes, control, and responsibility for cancer and chronic disease prevention in Alberta, Canada
Cited by: 5
Author(s): Kimberley D. Curtin, Mathew Thomson, Candace I. J. Nykiforuk
Software Mentions: 12
Published: over 3 years ago

10.1371/journal.pntd.0004236

Distribution and Potential Indicators of Hospitalized Cases of Neurocysticercosis and Epilepsy in Ecuador from 1996 to 2008
Cited by: 14
Author(s): Lenin Ron, Marco Coral-Almeida, Sarah Gabriël, Washington Benítez‐Ortiz, Claude Saegerman, Pierre Dorny, Dirk Berkvens, Emmanuel Abatih
Software Mentions: 7
Published: almost 9 years ago

10.1186/1476-069X-12-85

Statistical strategies for constructing health risk models with multiple pollutants and their interactions: possible choices and comparisons
Cited by: 112
Author(s): Zhichao Sun, Yuansheng Tao, Shi Li, Kelly K. Ferguson, John D. Meeker, Sung Kyun Park, Stuart Batterman, Bhramar Mukherjee
Software Mentions: 7
Published: almost 11 years ago

10.1371/journal.pone.0205076

Non-significant p-values? Strategies to understand and better determine the importance of effects and interactions in logistic regression
Cited by: 25
Author(s): Zarina I. Vakhitova, Clair Alston-Knox
Software Mentions: 7
Published: almost 6 years ago

10.1111/obes.12294

Semi‐parametric Regression under Model Uncertainty: Economic Applications
Cited by: 2
Author(s): Gertraud Malsiner‐Walli, Paul Hofmarcher, Bettina Grün
Software Mentions: 6
Published: over 5 years ago

10.1186/s12874-015-0066-2

Comparison of subset selection methods in linear regression in the context of health-related quality of life and substance abuse in Russia
Cited by: 53
Author(s): Olga Morozova, Olga S. Levina, Anneli Uusküla, Robert Heimer
Software Mentions: 6
Published: about 9 years ago

10.1371/journal.pone.0152686

GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research
Cited by: 42
Author(s): Ling‐Hong Hung, Daniel Kristiyanto, Sung Bong Lee, Ka Yee Yeung
Software Mentions: 6
Published: over 8 years ago

10.1186/1752-0509-8-47

Fast Bayesian inference for gene regulatory networks using ScanBMA
Cited by: 78
Author(s): William Chad Young, Adrian E. Raftery, Ka Yee Yeung
Software Mentions: 6
Published: over 10 years ago

10.1186/s12918-018-0581-y

SCNS: a graphical tool for reconstructing executable regulatory networks from single-cell genomic data
Cited by: 49
Author(s): Steven Woodhouse, Nir Piterman, Christoph M. Wintersteiger, Berthold Göttgens, Jasmin Fisher
Software Mentions: 6
Published: over 6 years ago

10.1186/1471-2407-9-164

Do serum biomarkers really measure breast cancer?
Cited by: 40
Author(s): Jonathan L. Jesneck, Sayan Mukherjee, Zoya R. Yurkovetsky, Merlise A. Clyde, Jeffrey R. Marks, Anna Lokshin, Joseph Y. Lo
Software Mentions: 5
Published: over 15 years ago

10.1371/journal.pone.0250045

Results from a malaria indicator survey highlight the importance of routine data capture in high-risk forest and farm transmission sites in Vietnam to tailor location-specific malaria elimination interventions
Cited by: 2
Author(s): Thang Ngo, Sara E. Canavati, Dang Viet Dung, Thuan Huu Vo, Duong Thanh Tran, Long Khanh Tran, Rosalie J. Whedbee, Ekaterina Milgotina, Gerard C. Kelly, Kimberly A. Edgel, Nicholas J. Martin
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.0020157

Selection of Target Sites for Mobile DNA Integration in the Human Genome
Cited by: 195
Author(s): Charles C. Berry, Sridhar Hannenhalli, Jeremy Leipzig, Frederic D. Bushman
Software Mentions: 4
Published: over 18 years ago

10.1371/journal.pone.0255420

Knowledge, attitude and practices of community pharmacists regarding COVID-19: A paper-based survey in Vietnam
Cited by: 12
Author(s): Huong Thi Thanh Nguyen, Dai Xuan Dinh, Văn Minh Nguyễn
Software Mentions: 4
Published: about 3 years ago

10.1186/s13756-019-0669-1

Enhanced infection control interventions reduced catheter-related bloodstream infections in the neonatal department of Hung Vuong Hospital, Vietnam, 2011–2012: a pre- and post-intervention study
Cited by: 2
Author(s): Hang Thi Phan, Thuan Huu Vo, Hang Thi Tran, Hanh Thi Ngoc Huynh, Hong Thi Thu Nguyen, Truong Van Nguyen
Software Mentions: 4
Published: over 4 years ago

10.1093/gigascience/gix078

fastBMA: scalable network inference and transitive reduction
Cited by: 6
Author(s): Ling‐Hong Hung, Kaiyuan Shi, Migao Wu, William Chad Young, Adrian E. Raftery, Ka Yee Yeung
Software Mentions: 4
Published: about 7 years ago

10.1186/s12879-020-05476-8

Targeting high risk forest goers for malaria elimination: a novel approach for investigating forest malaria to inform program intervention in Vietnam
Cited by: 8
Author(s): Sara E. Canavati, Gerard C. Kelly, Cesia E. Quintero, Thuan Huu Vo, Long Khanh Tran, Thang Ngo, Duong Thanh Tran, Kimberly A. Edgel, Nicholas J. Martin
Software Mentions: 4
Published: almost 4 years ago

10.3390/cells10020334

A Trans-Omics Comparison Reveals Common Gene Expression Strategies in Four Model Organisms and Exposes Similarities and Differences between Them
Cited by: 4
Author(s): Jaume Forés-Martos, Anabel Forte, José Garcı́a-Martı́nez, José E. Pérez-Ortín
Software Mentions: 3
Published: over 3 years ago

10.3389/fbioe.2019.00048

Bio-ModelChecker: Using Bounded Constraint Satisfaction to Seamlessly Integrate Observed Behavior With Prior Knowledge of Biological Networks
Cited by: 15
Author(s): Hooman Sedghamiz, Matthew M. Morris, Travis J. A. Craddock, Darrell Whitley, Gordon Broderick
Software Mentions: 3
Published: over 5 years ago

10.1016/j.csbj.2017.01.009

The effects of shared information on semantic calculations in the gene ontology
Cited by: 3
Author(s): Paul W. Bible, Hongwei Sun, María I. Morasso, Rasiah Loganantharaj, Lai Wei
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0256464

Risk factors for treatment failure in women with uncomplicated lower urinary tract infection
Cited by: 2
Author(s): Romain Martischang, Maciek Godycki-Ćwirko, Anna Kowalczyk, Katarzyna Kosiek, ‪Adi Turjeman‬‏, Tanya Babich, Shachaf Shiber, Leonard Leibovici, Elodie von Dach, Stéphan Juergen Harbarth, Angela Huttner
Software Mentions: 3
Published: about 3 years ago

10.1186/1471-2105-10-72

Iterative Bayesian Model Averaging: a method for the application of survival analysis to high-dimensional microarray data
Cited by: 55
Author(s): Amalia Annest, Roger E. Bumgarner, Adrian E. Raftery, Ka Yee Yeung
Software Mentions: 3
Published: over 15 years ago

10.1371/journal.pgen.1000796

Genomic Hotspots for Adaptation: The Population Genetics of Müllerian Mimicry in Heliconius erato
Cited by: 103
Author(s): Brian A. Counterman, Félix Araújo-Pérez, Heather M. Hines, Simon W. Baxter, Clay Morrison, Daniel P. Lindstrom, Riccardo Papa, Laura Ferguson, Mathieu Joron, Richard H. ffrench-Constant, Christopher P. Smith, Dahlia M. Nielsen, Rui Chen, Chris D. Jiggins, Robert D. Reed, Georg Halder, James Mallet, W. Owen McMillan
Software Mentions: 3
Published: over 14 years ago

10.1073/pnas.1903485116

Heterogeneity of Myc expression in breast cancer exposes pharmacological vulnerabilities revealed through executable mechanistic modeling
Cited by: 13
Author(s): Peter Kreuzaler, Malcolm Clarke, Elizabeth J. Brown, Catherine H. Wilson, Roderik M. Kortlever, Nir Piterman, Trevor D. Littlewood, Gérard I. Evan, Jasmin Fisher
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.ajhg.2016.01.008

Phenotype Similarity Regression for Identifying the Genetic Determinants of Rare Diseases
Cited by: 46
Author(s): Daniel Greene, Sylvia Richardson, Ernest Turro
Software Mentions: 2
Published: over 8 years ago

10.1186/s12859-021-04351-w

An integrated strategy for target SSR genotyping with toleration of nucleotide variations in the SSRs and flanking regions
Cited by: 0
Author(s): Yongxue Huo, Yikun Zhao, Li‐Wen Xu, Hongmei Yi, Yunlong Zhang, Xianqing Jia, Han Zhao, Jiuran Zhao, Fengge Wang
Software Mentions: 2
Published: about 3 years ago

10.1186/s12936-019-3068-4

Risk factor assessment for clinical malaria among forest-goers in a pre-elimination setting in Phu Yen Province, Vietnam
Cited by: 14
Author(s): Sara E. Canavati, Gerard C. Kelly, Cesia E. Quintero, Thuan Huu Vo, Long Khanh Tran, Colin Ohrt, Thang Ngo, Duong Thanh Tran, Nicholas J. Martin
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0096447

Modeling Age-Specific Mortality for Countries with Generalized HIV Epidemics
Cited by: 17
Author(s): David J. Sharrow, Samuel J. Clark, Adrian E. Raftery
Software Mentions: 2
Published: over 10 years ago

10.3389/frobt.2021.719496

AntAlate—A Multi-Agent Autonomy Framework
Cited by: 0
Author(s): David Dovrat, Alfred M. Bruckstein
Software Mentions: 2
Published: about 3 years ago

10.1002/hbm.24862

Neural bases of self‐ and object‐motion in a naturalistic vision
Cited by: 32
Author(s): Sabrina Pitzalis, Chiara Serra, Valentina Sulpizio, Giorgia Committeri, Francesco de Pasquale, Patrizia Fattori, Claudio Galletti, Rosamaria Sepe, Gaspare Galati
Software Mentions: 2
Published: almost 5 years ago

10.1038/srep38087

Chemotypic variation in terpenes emitted from storage pools influences early aphid colonisation on tansy
Cited by: 31
Author(s): Mary V. Clancy, Sharon E. Zytynska, Matthias Senft, Wolfgang W. Weisser, Jörg‐Peter Schnitzler
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep46474

Development and validation of a prognostic model for predicting 30-day mortality risk in medical patients in emergency department (ED)
Cited by: 4
Author(s): Duc T. Ha, Tam Quang Dang, Ngoc Van Tran, Tri Nhut Pham, Nguyen D. Nguyen, Tuan V. Nguyen
Software Mentions: 2
Published: over 7 years ago

10.1523/ENEURO.0380-20.2021

Differential Modulation of Effective Connectivity in the Brain’s Extended Face Processing System by Fearful and Sad Facial Expressions
Cited by: 11
Author(s): Alec Jamieson, Christopher G. Davey, Ben J Harrison
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pntd.0002798

El Niño Southern Oscillation and Leptospirosis Outbreaks in New Caledonia
Cited by: 51
Author(s): Daniel M Weinberger, Noémie Baroux, Jean-Paul Grangeon, Albert I. Ko, Cyrille Goarant
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0217771

Enablers and barriers to effective diabetes self-management: A multi-national investigation
Cited by: 142
Author(s): Mary D. Adu, Usman H. Malabu, A.E.O. Malau‐Aduli, Bunmi S. Malau‐Aduli
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph7041577

Bayesian Variable Selection in Cost-Effectiveness Analysis
Cited by: 4
Author(s): Miguel Ángel Negrín Hernández, Francisco José Vázquez Polo, María Concepción Verona Martel, Elı́as Moreno, F. Javier Girón
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0132682

Prioritizing Wetlands for Waterbirds in a Boom and Bust System: Waterbird Refugia and Breeding in the Murray-Darling Basin
Cited by: 21
Author(s): Gilad Bino, Richard T. Kingsford, J. L. Porter
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0176690

Forecasting influenza in Hong Kong with Google search queries and statistical model fusion
Cited by: 81
Author(s): Qinneng Xu, Yulia R. Gel, L. Leticia Ramirez Ramirez, Kusha Nezafati, Qingpeng Zhang, Kwok Leung Tsui
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1000709

Comparing Families of Dynamic Causal Models
Cited by: 616
Author(s): Will D. Penny, Klaas Ε. Stephan, Jean Daunizeau, Maria J. Rosa, Karl J. Friston, Thomas M. Schofield, Alexander Leff
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0029115

Bayesian Variable Selection in Searching for Additive and Dominant Effects in Genome-Wide Data
Cited by: 11
Author(s): Tomi Peltola, Pekka Marttinen, Antti Jula, Veikko Salomaa, Markus Perola, Aki Vehtari
Software Mentions: 1
Published: over 12 years ago

10.7717/peerj.2867

Hepatic fibrosis and factors associated with liver stiffness in HIV mono-infected individuals
Cited by: 4
Author(s): Mihály Sulyok, Tamás Ferenci, Mihály Makara, Gábor Horváth, János Szlávik, Zsófia Rupnik, Luca Kormos, Zsuzsanna Gerlei, Zita Sulyok, István Vályi‐Nagy
Software Mentions: 1
Published: over 7 years ago

10.1111/pirs.12615

Modeling the spread of COVID‐19 in New York City
Cited by: 8
Author(s): José Olmo, Marcos Sanso‐Navarro
Software Mentions: 1
Published: about 3 years ago

10.1186/s12918-016-0361-5

Interspecies gene function prediction using semantic similarity
Cited by: 11
Author(s): Guoxian Yu, Wei Luo, Guohong Fu, Jun Wang
Software Mentions: 1
Published: almost 8 years ago

10.1007/s42113-018-0022-4

Rejoinder: More Limitations of Bayesian Leave-One-Out Cross-Validation
Cited by: 12
Author(s): Quentin Frederik Gronau, Eric–Jan Wagenmakers
Software Mentions: 1
Published: over 5 years ago

10.1186/s12918-016-0359-z

An improved method for functional similarity analysis of genes based on Gene Ontology
Cited by: 18
Author(s): Zhen Tian, Chunyu Wang, Maozu Guo, Xiaoyan Liu, Zhaogang Teng
Software Mentions: 1
Published: almost 8 years ago

10.3109/10408444.2012.690725

Lung cancer and diesel exhaust: an updated critical review of the occupational epidemiology literature
Cited by: 40
Author(s): John F. Gamble, Mark J. Nicolich, Paolo Boffetta
Software Mentions: 1
Published: over 12 years ago

10.1093/database/baaa078

A Collection of Benchmark Data Sets for Knowledge Graph-based Similarity in the Biomedical Domain
Cited by: 9
Author(s): Carlota Cardoso, Rita Sousa, Sebastian Köhler, Cátia Pesquita
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2474-8-34

Constructing osteoarthritis through discourse – a qualitative analysis of six patient information leaflets on osteoarthritis
Cited by: 22
Author(s): Janet Grime, Bie Nio Ong
Software Mentions: 1
Published: over 17 years ago

10.12688/f1000research.8740.2

Biomedical Mutation Analysis (BMA): A software tool for analyzing mutations associated with antiviral resistance
Cited by: 3
Author(s): Karina Salvatierra, Héctor Flórez
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2288-10-108

Model selection in Medical Research: A simulation study comparing Bayesian Model Averaging and Stepwise Regression
Cited by: 61
Author(s): Anna Genell, Szilárd Nemes, Gunnar Steineck, Paul W. Dickman
Software Mentions: 1
Published: almost 14 years ago

10.3389/fgene.2014.00070

Inflammation blood and tissue factors of plaque growth in an experimental model evidenced by a systems approach
Cited by: 7
Author(s): Gualtiero Pelosi, Silvia Rocchiccioli, Antonella Cecchettini, Federica Viglione, M. Puntoni, Oberdan Parodi, Enrico Capobianco, Maria Giovanna Trivella
Software Mentions: 1
Published: over 10 years ago

10.3389/fnint.2018.00012

Source Reconstruction of Brain Potentials Using Bayesian Model Averaging to Analyze Face Intra-Domain vs. Face-Occupation Cross-Domain Processing
Cited by: 4
Author(s): Ela I. Olivares, Agustín Lage‐Castellanos, María A. Bobes, Jaime Iglesias
Software Mentions: 1
Published: over 6 years ago

10.3390/ijerph110100883

Disease Mapping and Regression with Count Data in the Presence of Overdispersion and Spatial Autocorrelation: A Bayesian Model Averaging Approach
Cited by: 21
Author(s): Mohammadreza Mohebbi, Rory Wolfe, Andrew Benjamin Forbes
Software Mentions: 1
Published: over 10 years ago

10.1186/s12879-015-0834-y

Variable performance of models for predicting methicillin-resistant Staphylococcus aureus carriage in European surgical wards
Cited by: 9
Author(s): Andie S. Lee, Angelo Pan, Stéphan Juergen Harbarth, Andrea Patroni, Annie Chalfine, George L. Daikos, Silvia Garilli, José Antonio Martínez, Ben S. Cooper
Software Mentions: 1
Published: over 9 years ago

10.1186/s12859-019-2752-2

GO functional similarity clustering depends on similarity measure, clustering method, and annotation completeness
Cited by: 17
Author(s): Meng Li, Paul D. Thomas
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1003573

Regulation of Sulphur Assimilation Is Essential for Virulence and Affects Iron Homeostasis of the Human-Pathogenic Mould Aspergillus fumigatus
Cited by: 80
Author(s): Jorge Amich, Lukas Schafferer, Hubertus Haas, Sven Krappmann
Software Mentions: 1
Published: about 11 years ago

10.1186/s12862-016-0584-5

The influence of recent social experience and physical environment on courtship and male aggression
Cited by: 12
Author(s): Topi K. Lehtonen, P. Andreas Svensson, Bob B. M. Wong
Software Mentions: 1
Published: over 8 years ago

10.1007/s00213-014-3526-1

Green tea extract enhances parieto-frontal connectivity during working memory processing
Cited by: 44
Author(s): André Schmidt, Felix Hammann, Bettina K. Wölnerhanssen, Anne Christin Meyer‐Gerspach, Jürgen Drewe, Christoph Beglinger, Stefan Borgwardt
Software Mentions: 1
Published: over 10 years ago

10.1038/srep08131

Using Bayesian modelling to investigate factors governing antibiotic-induced Candida albicans colonization of the GI tract
Cited by: 32
Author(s): Jyoti Shankar, Norma V. Solis, Stephanie Mounaud, Sebastian Szpakowski, Hong Li, Liliana Losada, William C. Nierman, Scott G. Filler
Software Mentions: 1
Published: over 9 years ago

10.1038/srep08190

Drug Target Optimization in Chronic Myeloid Leukemia Using Innovative Computational Platform
Cited by: 13
Author(s): Ryan Chuang, Benjamin A. Hall, David Benqué, Byron Cook, Samin Ishtiaq, Nir Piterman, Alex Taylor, Moshe Y. Vardi, Steffen Koschmieder, Berthold Göttgens, Jasmin Fisher
Software Mentions: 1
Published: over 9 years ago

10.3390/nu10081104

Cognitive Functioning of Geriatric Patients: Is Hypovitaminosis D the Next Marker of Cognitive Dysfunction and Dementia?
Cited by: 21
Author(s): Ewelina Łukaszyk, Katarzyna Bień‐Barkowska, Barbara Bień
Software Mentions: 1
Published: about 6 years ago

10.1186/1743-7075-8-69

Four variants in transferrin and HFE genes as potential markers of iron deficiency anaemia risk: an association study in menstruating women
Cited by: 32
Author(s): Ruth Blanco-Rojo, Carlos Baeza-Richer, Ana Marı́a López-Parra, Ana M. Pérez-Granados, Anna Brichs, Stefania Bertoncini, Alfonso Buil, Eduardo Arroyo-Pardo, José Manuel Nieto Soria, M. Pilar Vaquero
Software Mentions: 1
Published: almost 13 years ago

10.1038/s41598-018-26053-9

Sex-difference in bone architecture and bone fragility in Vietnamese
Cited by: 3
Author(s): Lan T. Ho‐Pham, Thao P. Ho-Le, D. Linh, Tam Hoang Minh, Minh C. Doan, Tuan V. Nguyen
Software Mentions: 1
Published: over 6 years ago

10.1186/1745-6215-15-212

Examination of mechanisms (E-MECHANIC) of exercise-induced weight compensation: study protocol for a randomized controlled trial
Cited by: 22
Author(s): Candice A. Myers, William D. Johnson, Conrad P. Earnest, Jennifer Rood, Catrine Tudor‐Locke, Neil M. Johannsen, Shannon Cocreham, Melissa Harris, Timothy S. Church, Corby K. Martin
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0065039

Spatial Prediction of N2O Emissions in Pasture: A Bayesian Model Averaging Analysis
Cited by: 5
Author(s): Xiaodong Huang, Peter R. Grace, Wenbiao Hu, David Rowlings, Kerrie Mengersen
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0174027

Extraction of features from sleep EEG for Bayesian assessment of brain development
Cited by: 23
Author(s): Vitaly Schetinin, Livija Jakaite
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0043121

A High Aggression Strategy for Smaller Males
Cited by: 26
Author(s): P. Andreas Svensson, Topi K. Lehtonen, Bob B. M. Wong
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0144912

Optimal Skin-to-Stone Distance Is a Positive Predictor for Successful Outcomes in Upper Ureter Calculi following Extracorporeal Shock Wave Lithotripsy: A Bayesian Model Averaging Approach
Cited by: 26
Author(s): Kang Su Cho, Hae Do Jung, Won Sik Ham, Doo Yong Chung, Yong Jin Kang, Won Sik Jang, Jong Kyou Kwon, Young Deuk Choi, Joo Yong Lee
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0066745

Improving the Measurement of Semantic Similarity between Gene Ontology Terms and Gene Products: Insights from an Edge- and IC-Based Hybrid Method
Cited by: 63
Author(s): Xiaomei Wu, Erli Pang, Kui Lin, Zhen-Ming Pei
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0071370

Changes in Effective Connectivity by Propofol Sedation
Cited by: 27
Author(s): Francisco Gómez, Christophe Phillips, Andrea Soddu, Mélanie Boly, Pierre Boveroux, Audrey Vanhaudenhuyse, Marie-Aurélie Bruno, Olivia Gosseries, Vincent Bonhomme, Steven Laureys, Quentin Noirhomme
Software Mentions: 1
Published: about 11 years ago

Projects: cran: BMA

Papers Mentioning BMA 69