cran: CMC | Projects | Ecosyste.ms: Papers

10.3389/fpsyg.2019.01529

Social Support and Emotional Intelligence as Protective Resources for Well-Being in Moroccan Adolescents
Cited by: 33
Author(s): Esther López-Zafra, Manuel M. Ramos‐Álvarez, Karima El Ghoudani, Octavio Luque-Reca, José María Augusto Landa, Benaissa Zarhbouch, Smail Alaoui, Daniel Cortés-Denia, Manuel Pulido-Martos
Software Mentions: 11
Published: over 5 years ago

10.1186/s12859-018-2309-9

Predicting overlapping protein complexes based on core-attachment and a local modularity structure
Cited by: 23
Author(s): Rongquan Wang, Caixia Wang, Lingtao Su, Liankun Sun
Software Mentions: 4
Published: about 6 years ago

10.1186/s12859-018-2555-x

Protein complexes identification based on go attributed network embedding
Cited by: 21
Author(s): Bo Xu, Kun Li, Wei Zheng, Xiaoxia Liu, Yijia Zhang, Zhehuan Zhao, Zengyou He
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12920-020-0684-3

Adaptive Fisher method detects dense and sparse signals in association analysis of SNV sets
Cited by: 2
Author(s): Xiaoyu Cai, Lo‐Bin Chang, Jordan Potter, Chi Song
Software Mentions: 4
Published: over 4 years ago

10.1007/s10858-020-00327-9

NMR quality control of fragment libraries for screening
Cited by: 18
Author(s): Sridhar Sreeramulu, Christian Richter, Till Kuehn, Kamal Azzaoui, Marcel J. J. Blommers, Rebecca Del Conte, Marco Fragai, Nils Trieloff, Peter Schmieder, Marc Nazaré, Edgar Specker, Vladimir N. Ivanov, Hartmut Oschkinat, Lucia Banci, Harald Schwalbe
Software Mentions: 4
Published: over 4 years ago

10.1186/s12859-016-1191-6

Protein complex prediction for large protein protein interaction networks with the Core&Peel method
Cited by: 35
Author(s): Marco Pellegrini, Miriam Baglioni, Filippo Geraci
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pgen.1003075

A Unified Method for Detecting Secondary Trait Associations with Rare Variants: Application to Sequence Data
Cited by: 6
Author(s): Dajiang Liu, Suzanne M. Leal
Software Mentions: 4
Published: almost 12 years ago

10.1186/1477-5956-10-S1-S18

Filtering Gene Ontology semantic similarity for identifying protein complexes in large protein interaction networks
Cited by: 17
Author(s): Jian Wang, Dong Xie, Hongfei Lin, Zhihao Yang, Yijia Zhang
Software Mentions: 3
Published: almost 13 years ago

10.1186/s12929-014-0088-9

Identifying rare and common disease associated variants in genomic data using Parkinson's disease as a model
Cited by: 6
Author(s): Ying Lin, Ai-Ru Hsieh, Ching Lin Hsiao, Shang Jung Wu, Hui‐Min David Wang, Ie Bin Lian, Cathy S.J. Fann
Software Mentions: 3
Published: about 10 years ago

10.3390/molecules22071223

Neighbor Affinity-Based Core-Attachment Method to Detect Protein Complexes in Dynamic PPI Networks
Cited by: 7
Author(s): Xiujuan Lei, Jing Liang
Software Mentions: 3
Published: over 7 years ago

10.3390/cells2020306

Reverse Engineering Cellular Networks with Information Theoretic Methods
Cited by: 53
Author(s): Alejandro F. Villaverde, John Ross, Julio R. Banga
Software Mentions: 3
Published: over 11 years ago

10.1186/1471-2164-11-S1-S3

Computational approaches for detecting protein complexes from protein interaction networks: a survey
Cited by: 281
Author(s): Xiaoli Li, Min Wu, Chee-Keong Kwoh, See-Kiong Ng
Software Mentions: 3
Published: almost 15 years ago

10.1186/1471-2105-15-S2-S6

Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels
Cited by: 18
Author(s): Peiying Ruan, Morihiro Hayashida, Osamu Maruyama, Tatsuya Akutsu
Software Mentions: 3
Published: almost 11 years ago

10.1186/1471-2164-14-S5-S15

PLW: Probabilistic Local Walks for detecting protein complexes from protein interaction networks
Cited by: 11
Author(s): Daniel Lin-Kit Wong, Xiaoli Li, Min Wu, Jie Zheng, See-Kiong Ng
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0229217

Testing gene-environment interactions for rare and/or common variants in sequencing association studies
Cited by: 4
Author(s): Zihan Zhao, Jianjun Zhang, Qiuying Sha, Hao Han
Software Mentions: 3
Published: over 4 years ago

10.1002/gepi.21743

VAAST 2.0: Improved Variant Classification and Disease‐Gene Identification Using a Conservation‐Controlled Amino Acid Substitution Matrix
Cited by: 128
Author(s): Hao Hu, Chad Huff, Barry Moore, Steven Flygare, Martin G. Reese, Mark Yandell
Software Mentions: 3
Published: over 11 years ago

10.1186/1756-0500-4-549

Which clustering algorithm is better for predicting protein complexes?
Cited by: 26
Author(s): Charalampos Moschopoulos, Georgios A. Pavlopoulos, Ernesto Iacucci, Jan Aerts, Spiridon D. Likothanassis, Reinhard Schneider, Σοφία Κοσσίδα
Software Mentions: 3
Published: almost 13 years ago

10.1155/2014/375262

Identifying Dynamic Protein Complexes Based on Gene Expression Profiles and PPI Networks
Cited by: 20
Author(s): Min Li, Weijie Chen, Jianxin Wang, Fang‐Xiang Wu, Yi Pan
Software Mentions: 2
Published: almost 11 years ago

10.1016/j.mex.2019.08.014

Human-exoskeleton control simulation, kinetic and kinematic modeling and parameters extraction
Cited by: 17
Author(s): Maryam Khamar, Mehdi Edrisi, Mohsen Zahiri
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0053197

Benchmarking Human Protein Complexes to Investigate Drug-Related Systems and Evaluate Predicted Protein Complexes
Cited by: 14
Author(s): Min Wu, Qi Yu, Xiaoli Li, Jie Zheng, Jing‐Fei Huang, Chee Keong Kwoh
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2105-14-S16-S8

Identifying conserved protein complexes between species by constructing interolog networks
Cited by: 32
Author(s): Phi Vu Nguyen, Sriganesh Srihari, Hon Wai Leong
Software Mentions: 2
Published: about 11 years ago

10.1186/1471-2105-14-163

Protein complex detection using interaction reliability assessment and weighted clustering coefficient
Cited by: 126
Author(s): Nazar Zaki, Dmitry Efimov, Jose Berengueres
Software Mentions: 2
Published: over 11 years ago

10.1186/s12859-016-0939-3

A two-layer integration framework for protein complex detection
Cited by: 17
Author(s): Le Ou-Yang, Min Wu, Xiaofei Zhang, Dao‐Qing Dai, Xiaoli Li, Hong Yan
Software Mentions: 2
Published: over 8 years ago

10.1186/s12859-016-1054-1

Construction of dynamic probabilistic protein interaction networks for protein complex identification
Cited by: 25
Author(s): Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang
Software Mentions: 2
Published: over 8 years ago

10.1186/s12859-017-1877-4

A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks
Cited by: 20
Author(s): Le Ou-Yang, Hong Yan, Xiaofei Zhang
Software Mentions: 2
Published: about 7 years ago

10.1186/1471-2105-14-347

Heterodimeric protein complex identification by naïve Bayes classifiers
Cited by: 7
Author(s): Osamu Maruyama
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2105-16-S12-S3

Protein complex detection in PPI networks based on data integration and supervised learning method
Cited by: 11
Author(s): Feng Yu, Zhi Yang, Xiao Hu, Youhong Sun, Hong Fei Lin, Jian Wang
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2164-16-S2-S4

Integrating experimental and literature protein-protein interaction data for protein complex prediction
Cited by: 10
Author(s): Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12864-019-5956-y

A seed-extended algorithm for detecting protein complexes based on density and modularity with topological structure and GO annotations
Cited by: 11
Author(s): Rongquan Wang, Caixia Wang, Liankun Sun
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-017-4131-6

An uncertain model-based approach for identifying dynamic protein complexes in uncertain protein-protein interaction networks
Cited by: 8
Author(s): Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yiwei Liu
Software Mentions: 2
Published: about 7 years ago

10.1186/1471-2334-13-228

Significant sequelae after bacterial meningitis in Niger: a cohort study
Cited by: 8
Author(s): Jean-François Jusot, Zilahatou Tohon, Abdoul Aziz Yazi, Jean-Marc Collard
Software Mentions: 2
Published: over 11 years ago

10.1186/1755-8794-7-S2-S3

Integrating PPI datasets with the PPI data from biomedical literature for protein complex detection
Cited by: 9
Author(s): Zhi Yang, Feng Yu, Hong Fei Lin, Jian Wang
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12920-017-0314-x

iOPTICS-GSO for identifying protein complexes from dynamic PPI networks
Cited by: 7
Author(s): Xiujuan Lei, Huan Li, Aidong Zhang, Fang‐Xiang Wu
Software Mentions: 2
Published: almost 7 years ago

10.1186/1752-0509-7-S6-S14

PPSampler2: Predicting protein complexes more accurately and efficiently by sampling
Cited by: 26
Author(s): Chasanah Kusumastuti Widita, Osamu Maruyama
Software Mentions: 2
Published: almost 12 years ago

10.1186/1752-0509-6-S2-S13

Supervised maximum-likelihood weighting of composite protein networks for complex prediction
Cited by: 36
Author(s): Chern Han Yong, Guimei Liu, Hon Nian Chua, Limsoon Wong
Software Mentions: 2
Published: almost 13 years ago

10.1186/s13062-015-0067-4

Prediction of problematic complexes from PPI networks: sparse, embedded, and small complexes
Cited by: 21
Author(s): Chern Han Yong, Limsoon Wong
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0062158

Protein Complex Detection via Weighted Ensemble Clustering Based on Bayesian Nonnegative Matrix Factorization
Cited by: 29
Author(s): Le Ou-Yang, Dao‐Qing Dai, Xiaofei Zhang
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0043092

Exploring Overlapping Functional Units with Various Structure in Protein Interaction Networks
Cited by: 20
Author(s): Xiaofei Zhang, Dao‐Qing Dai, Le Ou-Yang, Mengyun Wu
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0069633

Bayesian Detection of Causal Rare Variants under Posterior Consistency
Cited by: 10
Author(s): Faming Liang, Momiao Xiong
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0194124

Predicting protein complexes using a supervised learning method combined with local structural information
Cited by: 11
Author(s): Yadong Dong, Yeneng Sun, Chao Qin
Software Mentions: 2
Published: over 6 years ago

10.1186/s13015-015-0053-5

Detecting conserved protein complexes using a dividing-and-matching algorithm and unequally lenient criteria for network comparison
Cited by: 9
Author(s): Wei Peng, Jianxin Wang, Fang‐Xiang Wu, Yi Pan
Software Mentions: 2
Published: over 9 years ago

10.1007/s10577-016-9526-8

Integration of Lupinus angustifolius L. (narrow-leafed lupin) genome maps and comparative mapping within legumes
Cited by: 19
Author(s): Katarzyna Wyrwa, Michał Książkiewicz, Anna Szczepaniak, Karolina Susek, Jan Podkowiński, B. Naganowska
Software Mentions: 2
Published: over 8 years ago

10.3389/fgene.2018.00272

Reconstruction of the Protein-Protein Interaction Network for Protein Complexes Identification by Walking on the Protein Pair Fingerprints Similarity Network
Cited by: 13
Author(s): Bo Xu, Yu Liu, Chi Lin, Jie Dong, Xiaoxia Liu, Zengyou He
Software Mentions: 2
Published: over 6 years ago

10.1186/s13059-018-1579-x

GRIPT: a novel case-control analysis method for Mendelian disease gene discovery
Cited by: 4
Author(s): Jun Wang, Li Zhao, Xia Wang, Yong Chen, Min Xu, Zachry T. Soens, Zhongqi Ge, Peter Ronghan Wang, Fei Wang, Rui Chen
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13073-015-0138-2

Rare variant association studies: considerations, challenges and opportunities
Cited by: 172
Author(s): Paul L. Auer, Guillaume Lettre
Software Mentions: 2
Published: almost 10 years ago

10.1016/j.gpb.2019.02.002

Brain Banks Spur New Frontiers in Neuropsychiatric Research and Strategies for Analysis and Validation
Cited by: 11
Author(s): Le Wang, Yan Xia, Yu Chen, Rujia Dai, Wenying Qiu, Qingtuan Meng, Liz Kuney, Chao Chen
Software Mentions: 2
Published: over 5 years ago

10.1186/1477-5956-9-S1-S7

Ontology integration to identify protein complex in protein interaction networks
Cited by: 18
Author(s): Bo Xu, Hongfei Lin, Zhihao Yang
Software Mentions: 2
Published: almost 14 years ago

10.1038/s41598-017-04433-x

Whole Exome Sequencing to Identify Genetic Variants Associated with Raised Atherosclerotic Lesions in Young Persons
Cited by: 15
Author(s): James E. Hixson, Goo Jun, Lawrence C. Shimmin, Yizhi Wang, Guoqiang Yu, Chunhong Mao, Andrew S. Warren, Timothy D. Howard, Richard S. Vander Heide, Jennifer E. Van Eyk, Yue Wang, David M. Herrington
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0083841

Protein Complex Identification by Integrating Protein-Protein Interaction Evidence from Multiple Sources
Cited by: 12
Author(s): Bo Xu, Hongfei Lin, Yang Chen, Zhihao Yang, Hongfang Liu
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0144163

Detecting Protein Complexes in Protein Interaction Networks Modeled as Gene Expression Biclusters
Cited by: 27
Author(s): Eileen Marie Hanna, Nazar Zaki, Amr Amin
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0188566

A non-threshold region-specific method for detecting rare variants in complex diseases
Cited by: 4
Author(s): Ai-Ru Hsieh, Dao-Peng Chen, Amrita Chattopadhyay, Yingju Li, Chien-Ching Chang, Cathy S.J. Fann
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0062077

Construction of Ontology Augmented Networks for Protein Complex Prediction
Cited by: 16
Author(s): Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0091856

Detecting Overlapping Protein Complexes by Rough-Fuzzy Clustering in Protein-Protein Interaction Networks
Cited by: 46
Author(s): Hao Wu, Lin Gao, Jiuying Dong, Xiaofei Yang
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0180570

A density-based approach for detecting complexes in weighted PPI networks by semantic similarity
Cited by: 9
Author(s): Huanfu Zhou, Jie Liu, Junhuai Li, WenCong Duan
Software Mentions: 2
Published: over 7 years ago

10.1038/mp.2015.108

A genome-wide analysis of putative functional and exonic variation associated with extremely high intelligence
Cited by: 19
Author(s): Sarah L. Spain, Inti Pedroso, Neli Kadeva, Michael B. Miller, William G. Iacono, Matt McGue, Evie Stergiakouli, George Davey Smith, Martha Putallaz, David Lubinski, Emma L. Meaburn, Robert Plomin, Michael A. Simpson
Software Mentions: 1
Published: over 9 years ago

10.3390/molecules23102633

A Central Edge Selection Based Overlapping Community Detection Algorithm for the Detection of Overlapping Structures in Protein–Protein Interaction Networks
Cited by: 13
Author(s): Zhang Fang, Anjun Ma, Zhao Wang, Qin Ma, Bingqiang Liu, Lan Huang, Yan Wang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12859-016-1101-y

A method for predicting protein complex in dynamic PPI networks
Cited by: 29
Author(s): Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yiwei Liu, Shengtian Sang
Software Mentions: 1
Published: over 8 years ago

10.1186/1752-0509-8-S3-S4

Predicting protein complex in protein interaction network - a supervised learning based method
Cited by: 21
Author(s): Feng Yu, Zhi Yang, Nan Tang, Hong Fei Lin, Jian Wang, Zhi Yang
Software Mentions: 1
Published: about 10 years ago

10.1186/s12859-016-1164-9

Protein complex detection based on partially shared multi-view clustering
Cited by: 10
Author(s): Le Ou-Yang, Xiaofei Zhang, Dao‐Qing Dai, Mengyun Wu, Youwen Zhu, Zhiyong Liu, Hong Yan
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-020-59602-2

EMG-Assisted Muscle Force Driven Finite Element Model of the Knee Joint with Fibril-Reinforced Poroelastic Cartilages and Menisci
Cited by: 30
Author(s): Amir Esrafilian, Lauri Stenroth, Mika E. Mononen, Petri Tanska, Janne Avela, Rami K. Korhonen
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0150378

Stretching Your Energetic Budget: How Tendon Compliance Affects the Metabolic Cost of Running
Cited by: 82
Author(s): Thomas K. Uchida, Jennifer L. Hicks, Christopher Dembia, Scott L. Delp
Software Mentions: 1
Published: over 8 years ago

10.1186/1752-0509-7-S4-S12

Identifying protein complexes based on density and modularity in protein-protein interaction network
Cited by: 17
Author(s): Jun Ren, Jianxin Wang, Min Li, Lusheng Wang
Software Mentions: 1
Published: about 11 years ago

10.1186/1753-6561-8-S1-S48

Comparison of several sequence-based association methods in pedigrees
Cited by: 2
Author(s): George Mathew, Varghese George, Hongyan Xu
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2105-12-239

Noise reduction in protein-protein interaction graphs by the implementation of a novel weighting scheme
Cited by: 16
Author(s): George Kritikos, Charalampos Moschopoulos, Michalis Vazirgiannis, Σοφία Κοσσίδα
Software Mentions: 1
Published: over 13 years ago

10.1186/1477-5956-11-S1-S21

Identifying protein complexes with fuzzy machine learning model
Cited by: 3
Author(s): Bo Xu, Hongfei Lin, Kavishwar B. Wagholikar, Zhihao Yang, Hongfang Liu
Software Mentions: 1
Published: almost 12 years ago

10.1186/s40246-016-0069-z

Identification of protein complexes from multi-relationship protein interaction networks
Cited by: 12
Author(s): Xueyong Li, Jianxin Wang, Bihai Zhao, Fang‐Xiang Wu, Yi Pan
Software Mentions: 1
Published: over 8 years ago

Projects: cran: CMC

Papers Mentioning CMC 66