cran: js | Projects | Ecosyste.ms: Papers

10.3390/s19204567

Implementation of Sensing and Actuation Capabilities for IoT Devices Using oneM2M Platforms
Cited by: 14
Author(s): Jaeseok Yun, Il-Yeup Ahn, JaeSeung Song, Jae-Ho Kim
Software Mentions: 12
Published: about 5 years ago

10.1186/s13104-017-2607-8

NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
Cited by: 28
Author(s): Θεοδόσιος Θεοδοσίου, Georgios Efstathiou, Nikolas Papanikolaou, Nikos C. Kyrpides, Pantelis G. Bagos, Ioannis Iliopoulos, Georgios A. Pavlopoulos
Software Mentions: 11
Published: over 7 years ago

10.1107/S1600577518016570

Automated data collection and real-time data analysis suite for serial synchrotron crystallography
Cited by: 34
Author(s): Shibom Basu, Jakub Wojciech Kaminski, Ezequiel Panepucci, Chia‐Ying Huang, Rangana Warshamanage, Meitian Wang, Justyna Aleksandra Wojdyla
Software Mentions: 11
Published: almost 6 years ago

10.1371/journal.pone.0252488

PlateEditor: A web-based application for the management of multi-well plate layouts and associated data
Cited by: 2
Author(s): Vincent Delorme, Minjeong Woo, Virgínia Carla de Almeida Falcão, Connor Wood
Software Mentions: 10
Published: over 3 years ago

10.12688/f1000research.18236.1

BioHackathon 2015: Semantics of data for life sciences and reproducible research
Cited by: 5
Author(s): Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Seiichiro Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven Bolleman, Evan Bolton, Raoul J. P. Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, K. Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández‐Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yukiko Naito, Takeru Nakazato, Jeremy Nguyen-Xuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Toshio Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosiñach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Miguel Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
Software Mentions: 9
Published: almost 5 years ago

10.3390/s20051500

Towards IoT-Aided Human–Robot Interaction Using NEP and ROS: A Platform-Independent, Accessible and Distributed Approach
Cited by: 15
Author(s): Enrique Coronado, Gentiane Venture
Software Mentions: 9
Published: almost 5 years ago

10.12688/f1000research.2-192.v2

Cyrface: An interface from Cytoscape to R that provides a user interface to R packages
Cited by: 3
Author(s): Emanuel Gonçalvès, Franz Mirlach, Julio Sáez-Rodríguez
Software Mentions: 8
Published: over 10 years ago

10.1371/journal.pgen.1009744

The Integrity of the HMR complex is necessary for centromeric binding and reproductive isolation in Drosophila
Cited by: 25
Author(s): A. Lukacs, Andreas W. Thomae, P. Krueger, Tamás Schauer, Anuroop Venkateswaran Venkatasubramani, Natalia Y. Kochanova, Wasim Aftab, Rupam Choudhury, Ignasi Forné, Axel Imhof
Software Mentions: 8
Published: over 3 years ago

10.1002/pmic.201400377

Open source libraries and frameworks for biological data visualisation: A guide for developers
Cited by: 37
Author(s): Rui Wang, Yasset Perez‐Riverol, Henning Hermjakob, Juan Antonio Vizcaíno
Software Mentions: 8
Published: almost 10 years ago

10.1186/s13742-015-0077-2

Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future
Cited by: 83
Author(s): Georgios A. Pavlopoulos, Dimitris Malliarakis, Nikolas Papanikolaou, Θεοδόσιος Θεοδοσίου, Anton J. Enright, Ioannis Iliopoulos
Software Mentions: 7
Published: over 9 years ago

10.1093/bioinformatics/btu616

Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking
Cited by: 112
Author(s): Paul J. McMurdie, Susan Holmes
Software Mentions: 7
Published: about 10 years ago

10.3762/bjnano.6.165

The eNanoMapper database for nanomaterial safety information
Cited by: 82
Author(s): Nina Jeliazkova, Charalampos Chomenidis, Philip Doganis, Bengt Fadeel, Roland C. Grafström, Barry Hardy, Janna Hastings, Markus Hegi, Vedrin Jeliazkov, Nikolay Kochev, Pekka Kohonen, Cristian R. Munteanu, Haralambos Sarimveis, Bart Smeets, Pantelis Sopasakis, Georgia Tsiliki, David Vorgrimmler, Egon Willighagen
Software Mentions: 7
Published: over 9 years ago

10.1371/journal.pone.0176334

shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics
Cited by: 97
Author(s): Bohdan B. Khomtchouk, John L. Hennessy, Claes Wahlestedt
Software Mentions: 7
Published: over 7 years ago

10.3390/s20154131

Framework and Methodology for Establishing Port-City Policies Based on Real-Time Composite Indicators and IoT: A Practical Use-Case
Cited by: 8
Author(s): Ignacio Lacalle, Andreu Belsa, Rafael Vaño, Carlos E. Palau
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0197238

Efficient methods and readily customizable libraries for managing complexity of large networks
Cited by: 10
Author(s): Uğur Doğrusöz, Alper Karacelik, Ilkin Safarli, Leonard Dervishi, Metin Can Siper
Software Mentions: 6
Published: over 6 years ago

10.1038/sdata.2017.151

Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data
Cited by: 159
Author(s): Nicolas Fernandez, Gregory W. Gundersen, Adeeb Rahman, Mark L. Grimes, Klarisa Rikova, Peter Hornbeck, Avi Ma’ayan
Software Mentions: 6
Published: about 7 years ago

10.3390/s19194283

IoMT Platform for Pervasive Healthcare Data Aggregation, Processing, and Sharing Based on OneM2M and OpenEHR
Cited by: 62
Author(s): Jesús Noel Suárez Rubí, Paulo Roberto de Lira Gondim
Software Mentions: 6
Published: about 5 years ago

10.1155/2017/4074137

An HTML5-Based Pure Website Solution for Rapidly Viewing and Processing Large-Scale 3D Medical Volume Reconstruction on Mobile Internet
Cited by: 9
Author(s): Liang Qiao, Xin Chen, Ye Zhang, Jingna Zhang, Yi Wu, Ying Liu, Xue-Mei Mo, Wei Chen, Bing Xie, Mingguo Qiu
Software Mentions: 5
Published: almost 8 years ago

10.1186/s12859-018-2299-7

CamurWeb: a classification software and a large knowledge base for gene expression data of cancer
Cited by: 9
Author(s): Emanuel Weitschek, Silvia Di Lauro, Eleonora Cappelli, Paola Bertolazzi, G. Felici
Software Mentions: 5
Published: about 6 years ago

10.3390/v13010049

Computational Analysis of SARS-CoV-2 and SARS-Like Coronavirus Diversity in Human, Bat and Pangolin Populations
Cited by: 18
Author(s): Nicholas J Dimonaco, Mazdak Salavati, Barbara Shih
Software Mentions: 5
Published: almost 4 years ago

10.3390/s19102228

Design and Implementation of an Integrated IoT Blockchain Platform for Sensing Data Integrity
Cited by: 154
Author(s): Hang Lei, Do‐Hyeun Kim
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj-cs.214

Citation.js: a format-independent, modular bibliography tool for the browser and command line
Cited by: 2
Author(s): Lars Willighagen
Software Mentions: 5
Published: over 5 years ago

10.12688/f1000research.5499.1

Visualisation of BioPAX Networks using BioLayout Express3D
Cited by: 16
Author(s): Derek W. Wright, Tim Angus, Anton J. Enright, Tom C. Freeman
Software Mentions: 5
Published: about 10 years ago

10.3389/frai.2020.00013

Designing and Evaluating the Usability of a Machine Learning API for Rapid Prototyping Music Technology
Cited by: 5
Author(s): Francisco Bernardo, Michael Zbyszyński, Mick Grierson, Rebecca Fiebrink
Software Mentions: 5
Published: over 4 years ago

10.1002/pro.3783

The Dundee Resource for Sequence Analysis and Structure Prediction
Cited by: 11
Author(s): Stuart A. MacGowan, Fábio Madeira, Thiago Britto‐Borges, Mateusz Warowny, Alexey Drozdetskiy, James B. Procter, Geoffrey J. Barton
Software Mentions: 5
Published: about 5 years ago

10.1038/s41597-019-0081-y

Catalysis-Hub.org, an open electronic structure database for surface reactions
Cited by: 150
Author(s): Kirsten T. Winther, Max J. Hoffmann, Jacob R. Boes, Osman Mamun, Michal Bajdich, Thomas Bligaard
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-018-2283-2

phylotree.js - a JavaScript library for application development and interactive data visualization in phylogenetics
Cited by: 38
Author(s): Stephen D Shank, Steven Weaver, Sergei L. Kosakovsky Pond
Software Mentions: 4
Published: over 6 years ago

10.3758/s13428-021-01703-5

MouseView.js: Reliable and valid attention tracking in web-based experiments using a cursor-directed aperture
Cited by: 8
Author(s): Alexander Anwyl-Irvine, Thomas J. Armstrong, Edwin S. Dalmaijer
Software Mentions: 4
Published: about 3 years ago

10.1155/2015/904541

Trends in IT Innovation to Build a Next Generation Bioinformatics Solution to Manage and Analyse Biological Big Data Produced by NGS Technologies
Cited by: 24
Author(s): Alexandre G. de Brevern, Jean-Philippe Meyniel, Cécile Fairhead, Cécile Neuveglise, Alain Malpertuy
Software Mentions: 4
Published: almost 10 years ago

10.12688/f1000research.4510.2

Cytoscape tools for the web age: D3.js and Cytoscape.js exporters
Cited by: 38
Author(s): Keiichiro Ono, Barry Demchak, Trey Ideker
Software Mentions: 4
Published: about 10 years ago

10.3389/fninf.2018.00006

Arkheia: Data Management and Communication for Open Computational Neuroscience
Cited by: 5
Author(s): Ján Antolík, Andrew P. Davison
Software Mentions: 4
Published: almost 7 years ago

10.1093/gigascience/giy005

GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees pipeline
Cited by: 9
Author(s): Anil Thanki, Nicola Soranzo, Wilfried Haerty, Robert P. Davey
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41597-021-00933-8

Cric searchable image database as a public platform for conventional pap smear cytology data
Cited by: 19
Author(s): Mariana T. Rezende, Raniere Silva, Fagner de O. Bernardo, Alessandra Hermógenes Gomes Tobias, Paulo H. C. Oliveira, Tales Mota Machado, Caio S. Costa, Fátima N. S. de Medeiros, Daniela Ushizima, Cláudia Martins Carneiro, Andrea Gomes Campos Bianchi
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-017-04375-4

Comparative genetic, proteomic and phosphoproteomic analysis of C. elegans embryos with a focus on ham-1/STOX and pig-1/MELK in dopaminergic neuron development
Cited by: 11
Author(s): Sarah-Lena Offenburger, Dalila Bensaddek, Alejandro Brenes Murillo, Anton Gartner
Software Mentions: 4
Published: over 7 years ago

10.3390/s16020220

FingerScanner: Embedding a Fingerprint Scanner in a Raspberry Pi
Cited by: 8
Author(s): Jordi Sapes, Francesc Solsona
Software Mentions: 4
Published: almost 9 years ago

10.3390/s17102321

Design of a Low-Cost Air Levitation System for Teaching Control Engineering
Cited by: 31
Author(s): Jesús Chacón, Jacobo Sáenz, Luís de la Torre, José Quintanal Díaz, Francisco Esquembre
Software Mentions: 4
Published: about 7 years ago

10.3390/s19214724

The Advent of the Internet of Things in Airfield Lightning Systems: Paving the Way from a Legacy Environment to an Open World
Cited by: 2
Author(s): Enrico Buzzoni, Fabio Forlani, Carlo Giannelli, Matteo Mazzotti, Stefano Parisotto, Alessandro Pomponio, Cesare Stefanelli
Software Mentions: 4
Published: about 5 years ago

10.3390/s21093239

Proposal of an Economy of Things Architecture and an Approach Comparing Cryptocurrencies
Cited by: 0
Author(s): Bruno Machado Agostinho, Mário A. R. Dantas, Alex Sandro Roschildt Pinto
Software Mentions: 4
Published: over 3 years ago

10.1007/s10207-019-00442-1

DOMtegrity: ensuring web page integrity against malicious browser extensions
Cited by: 10
Author(s): Ehsan Toreini, Siamak F. Shahandashti, Maryam Mehrnezhad, Feng Hao
Software Mentions: 4
Published: over 5 years ago

10.12688/f1000research.12707.2

CellMap visualizes protein-protein interactions and subcellular localization
Cited by: 4
Author(s): Christian Dallago, Tatyana Goldberg, Miguel A. Andrade‐Navarro, Gregorio Alanis-Lobato, Burkhard Rost
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0111928

CollaborationViz: Interactive Visual Exploration of Biomedical Research Collaboration Networks
Cited by: 12
Author(s): Jiang Bian, Mengjun Xie, Teresa J. Hudson, Hari Eswaran, Mathias Brochhausen, Josh Hanna, William R. Hogan
Software Mentions: 3
Published: about 10 years ago

10.1186/s12984-020-00742-x

Traumatic brain injury neuroelectrochemical monitoring: behind-the-ear micro-instrument and cloud application
Cited by: 3
Author(s): Momen Kamal Tageldeen, Sally A. N. Gowers, Chi Leng Leong, Martyn G. Boutelle, Emmanuel M. Drakakis
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-018-31573-5

Machine learning identifies interacting genetic variants contributing to breast cancer risk: A case study in Finnish cases and controls
Cited by: 52
Author(s): Hamid Behravan, Jaana M. Hartikainen, Maria Tengström, Katri Pylkäs, Robert Winqvist, Veli‐Matti Kosma, Arto Mannermaa
Software Mentions: 3
Published: over 6 years ago

10.3390/s18103577

Smart Contract-Based Review System for an IoT Data Marketplace
Cited by: 68
Author(s): Jaebeom Park, Taek-Young Youn, Hye-Bin Kim, Kyung-Hyune Rhee, Sang-Uk Shin
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj-cs.709

Research on digital copyright protection based on the hyperledger fabric blockchain network technology
Cited by: 7
Author(s): Yanhui Liu, Jianbiao Zhang, Shupei Wu, Muhammad Salman Pathan
Software Mentions: 3
Published: over 3 years ago

10.3390/s19153316

Smart Industrial IoT Monitoring and Control System Based on UAV and Cloud Computing Applied to a Concrete Plant
Cited by: 65
Author(s): Marouane Salhaoui, Antonio Guerrero-González, Mounir Arioua, Francisco Ortiz, Ahmed El Oualkadi, Carlos Luis Torregrosa
Software Mentions: 3
Published: over 5 years ago

10.1186/s42492-021-00085-x

Visualizing risk factors of dementia from scholarly literature using knowledge maps and next-generation data models
Cited by: 2
Author(s): Kiran Fahd, Sitalakshmi Venkatraman
Software Mentions: 3
Published: over 3 years ago

10.1177/20416695211027920

Effects of Masks Worn to Protect Against COVID-19 on the Perception of Facial Attractiveness
Cited by: 24
Author(s): Miki Kamatani, Motohiro Ito, Yuki Miyazaki, Jun‐ichiro Kawahara
Software Mentions: 3
Published: over 3 years ago

10.3390/s20030828

5G support for Industrial IoT Applications— Challenges, Solutions, and Research gaps
Cited by: 129
Author(s): Pál Varga, József Pető, Attila Frankó, David Balla, Dávid Haja, Ferenc Nándor Janky, Gábor Soós, Dániel Ficzere, Markosz Maliosz, László Toka
Software Mentions: 3
Published: almost 5 years ago

10.3389/fnins.2020.00125

BraTS Toolkit: Translating BraTS Brain Tumor Segmentation Algorithms Into Clinical and Scientific Practice
Cited by: 46
Author(s): Florian Kofler, Christoph Berger, Diana Waldmannstetter, Jana Lipková, Ivan Ezhov, Giles Tetteh, Jan S. Kirschke, Claus Zimmer, Benedikt Wiestler, Bjoern Menze
Software Mentions: 3
Published: over 4 years ago

10.3390/healthcare9030285

Multi-Parameter Vital Sign Telemedicine System Using Web Socket for COVID-19 Pandemics
Cited by: 2
Author(s): C. Pintavirooj, Tanapon Keatsamarn, Treesukon Treebupachatsakul
Software Mentions: 3
Published: almost 4 years ago

10.3390/s18103253

A oneM2M-Based Query Engine for Internet of Things (IoT) Data Streams
Cited by: 7
Author(s): Putu Wiramaswara Widya, Yoga Yustiawan, Joonho Kwon
Software Mentions: 2
Published: about 6 years ago

10.1016/j.heliyon.2020.e03806

PVC.js: visualizing C programs on web browsers for novices
Cited by: 3
Author(s): Ryosuke Ishizue, Kazunori Sakamoto, Hironori Washizaki, Yoshiaki Fukazawa
Software Mentions: 2
Published: over 4 years ago

10.3390/s19030481

Integrated Management of Energy, Wellbeing and Health in the Next Generation of Smart Homes
Cited by: 29
Author(s): Saad El Jaouhari, Emilio José García, Josep M. Guerrero, Ahmed Bouabdallah
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13073-018-0565-y

Prioritization and functional assessment of noncoding variants associated with complex diseases
Cited by: 27
Author(s): Lin Zhou, Fangqing Zhao
Software Mentions: 2
Published: over 6 years ago

10.3389/fninf.2014.00071

Harnessing modern web application technology to create intuitive and efficient data visualization and sharing tools
Cited by: 38
Author(s): Dylan Wood, Margaret D. King, Drew Landis, William Courtney, Runtang Wang, Ross Kelly, Jessica A. Turner, Vince D. Calhoun
Software Mentions: 2
Published: over 10 years ago

10.1074/mcp.RA120.002041

Examining and Fine-tuning the Selection of Glycan Compositions with GlyConnect Compozitor
Cited by: 16
Author(s): Thibault Robin, Julien Mariethoz, Frédérique Lisacek
Software Mentions: 2
Published: about 4 years ago

10.1002/mds.28068

Shared Metabolic Profile of Caffeine in Parkinsonian Disorders
Cited by: 7
Author(s): Haruka Takeshige‐Amano, Sachio Saiki, Mitsuhisa Fujimaki, Shinichi Ueno, Yuanzhe Li, Taku Hatano, Keiichi Ishikawa, Yusuke Oji, Akio Mori, Ayami Okuzumi, Taiji Tsunemi, Kensuke Daida, Yuta Ishiguro, Yoko Imamichi, Hisayoshi Nanmo, Shuko Nojiri, Manabu Funayama, Nobutaka Hattori
Software Mentions: 2
Published: over 4 years ago

10.12688/f1000research.4573.1

Development and use of the Cytoscape app GFD-Net for measuring semantic dissimilarity of gene networks
Cited by: 11
Author(s): Juan J. Díaz-Montaña, Norberto Díaz–Díaz
Software Mentions: 2
Published: over 10 years ago

10.1093/gigascience/giy128

Aequatus: an open-source homology browser
Cited by: 1
Author(s): Anil Thanki, Nicola Soranzo, Javier Herrero, Wilfried Haerty, Robert P. Davey
Software Mentions: 2
Published: about 6 years ago

10.1186/1748-7188-7-12

Fractal MapReduce decomposition of sequence alignment
Cited by: 22
Author(s): Jonas S. Almeida, Alexander Grüneberg, Wolfgang Maaß, Susana Vinga
Software Mentions: 2
Published: over 12 years ago

10.1186/1758-2946-5-46

CH5M3D: an HTML5 program for creating 3D molecular structures
Cited by: 6
Author(s): Clarke W. Earley
Software Mentions: 2
Published: about 11 years ago

10.1038/srep31128

VHLdb: A database of von Hippel-Lindau protein interactors and mutations
Cited by: 34
Author(s): Francesco Tabaro, Giovanni Minervini, Faiza Sundus, Federica Quaglia, Emanuela Leonardi, Damiano Piovesan, Silvio C. E. Tosatto
Software Mentions: 2
Published: over 8 years ago

10.3390/s21124045

Deep-Framework: A Distributed, Scalable, and Edge-Oriented Framework for Real-Time Analysis of Video Streams
Cited by: 2
Author(s): Alessandro Sassu, Jose Francisco Saenz-Cogollo, Maurizio Agelli
Software Mentions: 2
Published: over 3 years ago

10.1002/mgg3.641

VCF‐Server: A web‐based visualization tool for high‐throughput variant data mining and management
Cited by: 9
Author(s): Jianping Jiang, Jianlei Gu, Tingting Zhao, Hui Lu
Software Mentions: 2
Published: over 5 years ago

10.1186/s13104-016-1938-1

blastjs: a BLAST+ wrapper for Node.js
Cited by: 10
Author(s): Martin Pagé, Dan MacLean, Christian Schudoma
Software Mentions: 2
Published: almost 9 years ago

10.3390/s16030365

Pressure Mapping Mat for Tele-Home Care Applications
Cited by: 34
Author(s): Jose Francisco Saenz-Cogollo, Massimiliano Pau, Beatrice Fraboni, Annalisa Bonfiglio
Software Mentions: 2
Published: almost 9 years ago

10.1093/bioinformatics/bty823

The Encyclopedia of Proteome Dynamics: the KinoViewer
Cited by: 10
Author(s): Alejandro Brenes, Angus I. Lamond
Software Mentions: 2
Published: over 6 years ago

10.3390/s18072183

A Personalized Healthcare Monitoring System for Diabetic Patients by Utilizing BLE-Based Sensors and Real-Time Data Processing
Cited by: 138
Author(s): Ganjar Alfian, Muhammad Syafrudin, Muhammad Fazal Ijaz, M. Alex Syaekhoni, Norma Latif Fitriyani, Jongtae Rhee
Software Mentions: 2
Published: over 6 years ago

Projects: cran: js

Papers Mentioning js 69