Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: Cascade
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Cascade
Selection, Reverse-Engineering and Prediction in Cascade
Networks
4 versions
Latest release: almost 2 years ago
1 dependent package
294 downloads last month
Papers Mentioning Cascade 64
10.3389/fneur.2020.546744
LesionQuant for Assessment of MRI in Multiple Sclerosis—A Promising Supplement to the Visual Scan InspectionCited by: 7
Author(s): Synne Brune, Einar August Høgestøl, Vanja Cengija, Pål Berg‐Hansen, Piotr Sowa, Gro Owren Nygaard, Hanne F. Harbo, Mona K. Beyer
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pone.0218264
Predicting biomedical relationships using the knowledge and graph embedding cascade modelCited by: 18
Author(s): Xiaomin Liang, Daifeng Li, Min Song, Andrew D. Madden, Ying Ding, Yi Bu
Software Mentions: 5
Published: over 5 years ago
10.3390/s21144837
Optimally-Weighted Image-Pose Approach (OWIPA) for Distracted Driver Detection and ClassificationCited by: 10
Author(s): Hong Vin Koay, Joon Huang Chuah, Chee-Onn Chow, Yang-Lang Chang, Bhuvendhraa Rudrusamy
Software Mentions: 4
Published: over 3 years ago
10.3389/fneur.2019.00450
Cross-Sectional and Longitudinal MRI Brain Scans Reveal Accelerated Brain Aging in Multiple SclerosisCited by: 61
Author(s): Einar August Høgestøl, Tobias Kaufmann, Gro Owren Nygaard, Mona K. Beyer, Piotr Sowa, Jan Egil Nordvik, Knut-Kristian Kolskår, Geneviève Richard, Ole A. Andreassen, Hanne F. Harbo, Lars T. Westlye
Software Mentions: 4
Published: over 5 years ago
10.1186/s13321-020-0411-2
3DStructGen: an interactive web-based 3D structure generation for non-periodic molecule and crystalCited by: 3
Author(s): Pin Chen, Yu Wang, Hui Yan, Sen Gao, Zexin Xu, Yangzhong Li, Qing Mo, Junkang Huang, Jun Tao, GeChuanqi Pan, Jiahui Li, Yunfei Du
Software Mentions: 3
Published: almost 5 years ago
10.3390/s16030279
Device Data Ingestion for Industrial Big Data Platforms with a Case StudyCited by: 35
Author(s): Cun Ji, Qingshi Shao, Jiao Sun, Shijun Liu, Li Pan, Lei Wu, Chenglei Yang
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pone.0056449
Improved Detection of Remote Homologues Using Cascade PSI-BLAST: Influence of Neighbouring Protein Families on Sequence CoverageCited by: 10
Author(s): Sushmita Kaushik, Eshita Mutt, Ajithavalli Chellappan, Sankaran Sandhya, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
Software Mentions: 3
Published: over 11 years ago
10.1186/s12864-016-2389-8
Cascade: an RNA-seq visualization tool for cancer genomicsCited by: 2
Author(s): Aaron R. Shifman, Radia Marie Johnson, Brian T. Wilhelm
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0105716
DNA Binding Properties of the Small Cascade Subunit Csa5Cited by: 11
Author(s): Michael Daume, André Plagens, Lennart Randau
Software Mentions: 2
Published: about 10 years ago
10.1371/journal.pone.0035888
CRISPR Interference Directs Strand Specific Spacer AcquisitionCited by: 338
Author(s): Daan C. Swarts, Cas Mosterd, Mark W. J. van Passel, Stan J. J. Brouns
Software Mentions: 2
Published: over 12 years ago
10.1140/epjc/s10052-018-5642-2
Calculations with off-shell matrix elements, TMD parton densities and TMD parton showersCited by: 20
Author(s): Marcin Bury, A. van Hameren, H. Jung, Krzysztof Kutak, Sebastian Sapeta, M. Serino
Software Mentions: 2
Published: almost 7 years ago
10.1155/2014/284827
Real-Time Depth-Based Hand Detection and TrackingCited by: 14
Author(s): Sung-Il Joo, Sun-Hee Weon, Hyung-Il Choi
Software Mentions: 2
Published: almost 11 years ago
10.1002/jgrd.50402
The role of deep convection and nocturnal low‐level jets for dust emission in summertime West Africa: Estimates from convection‐permitting simulationsCited by: 128
Author(s): Bernd Heinold, Peter Knippertz, John H. Marsham, Stephanie Fiedler, Nick Dixon, Kerstin Schepanski, L. Bouchet, Ina Tegen
Software Mentions: 2
Published: over 11 years ago
10.3390/healthcare9010054
TMD-Unet: Triple-Unet with Multi-Scale Input Features and Dense Skip Connection for Medical Image SegmentationCited by: 35
Author(s): Song-Toan Tran, Ching-Hwa Cheng, Thanh-Tuan Nguyen, Minh-Hai Le, Don‐Gey Liu
Software Mentions: 2
Published: almost 4 years ago
10.3390/s21041033
Deep Learning Approaches on Defect Detection in High Resolution Aerial Images of InsulatorsCited by: 44
Author(s): Qiaodi Wen, Ziqi Luo, Ruitao Chen, Yifan Yang, Guofa Li
Software Mentions: 2
Published: almost 4 years ago
10.1029/2017MS001189
Forcing Single-Column Models Using High-Resolution Model SimulationsCited by: 8
Author(s): Hilary Christensen, Andrew Dawson, Christopher E. Holloway
Software Mentions: 2
Published: over 6 years ago
10.3390/s21082587
3D Face Point Cloud Reconstruction and Recognition Using Depth SensorCited by: 9
Author(s): Cheng Wei Wang, Chao-Chung Peng
Software Mentions: 2
Published: over 3 years ago
10.1186/1745-6150-6-38
Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systemsCited by: 380
Author(s): Kira S. Makarova, L. Aravind, Yuri I. Wolf, Eugene V. Koonin
Software Mentions: 2
Published: over 13 years ago
10.3389/fgene.2018.00240
CRISPR/Cascade 9-Mediated Genome Editing-Challenges and OpportunitiesCited by: 41
Author(s): Bhaskar Roy, Jing Zhao, Chao Yang, Wen Luo, Tengfei Xiong, Yong Li, Xiaodong Fang, Guanjun Gao, Chabungbam Orville Singh, Lise Madsen, Yong Zhou, Karsten Kristiansen
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2017.00652
H-NS Mutation-Mediated CRISPR-Cas Activation Inhibits Phage Release and Toxin Production of Escherichia coli Stx2 Phage LysogenCited by: 9
Author(s): Qiang Fu, Shiyu Li, Zhaofei Wang, Wenya Shan, Jingjiao Ma, Yuqiang Cheng, Hengan Wang, Yaxian Yan, Jianhe Sun
Software Mentions: 1
Published: over 7 years ago
10.3389/fmicb.2017.00319
Commentary: Type I CRISPR-Cas targets endogenous genes and regulates virulence to evade mammalian host immunityCited by: 11
Author(s): Hanna Müller-Esparza, Lennart Randau
Software Mentions: 1
Published: over 7 years ago
10.3389/fmolb.2016.00045
The Influence of Copy-Number of Targeted Extrachromosomal Genetic Elements on the Outcome of CRISPR-Cas DefenseCited by: 23
Author(s): Konstantin Severinov, Iaroslav Ispolatov, Ekaterina Semenova
Software Mentions: 1
Published: about 8 years ago
10.3390/genes11020208
Cas3 Protein—A Review of a Multi-Tasking MachineCited by: 20
Author(s): He Liu, Michael St. John James, Marin Radovčić, Ivana Ivančić-Baće, Edward L. Bolt
Software Mentions: 1
Published: over 4 years ago
10.1186/s13059-015-0816-9
Diversity of CRISPR-Cas immune systems and molecular machinesCited by: 67
Author(s): Rodolphe Barrangou
Software Mentions: 1
Published: almost 9 years ago
10.1074/jbc.M116.724062
Gene Repression in Haloarchaea Using the CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)-Cas I-B SystemCited by: 61
Author(s): Aris-Edda Stachler, Anita Marchfelder
Software Mentions: 1
Published: over 8 years ago
10.1186/1758-2946-4-7
CheS-Mapper - Chemical Space Mapping and Visualization in 3DCited by: 47
Author(s): Martin Gütlein, Andreas Karwath, Stefan Krämer
Software Mentions: 1
Published: over 12 years ago
10.1080/15476286.2018.1496773
DNA replication roadblocks caused by Cascade interference complexes are alleviated by RecG DNA repair helicaseCited by: 13
Author(s): Tom Killelea, Michelle Hawkins, Jamieson A. L. Howard, Peter McGlynn, Edward L. Bolt
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-019-52548-0
Disentangling photoperiod from hop vernalization and dormancy for global production and speed breedingCited by: 19
Author(s): William L. Bauerle
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-52966-0
Performance of five automated white matter hyperintensity segmentation methods in a multicenter datasetCited by: 35
Author(s): Rutger Heinen, Martijn D. Steenwijk, Frederik Barkhof, J. Matthijs Biesbroek, Wiesje M. van der Flier, Hugo J. Kuijf, Niels D. Prins, Hugo Vrenken, Geert Jan Biessels, Jeroen de Bresser
Software Mentions: 1
Published: almost 5 years ago
10.3390/s18124269
Foreground Detection with Deeply Learned Multi-Scale Spatial-Temporal FeaturesCited by: 17
Author(s): Yao Wang, Zhiwu Yu, Liqiang Zhu
Software Mentions: 1
Published: almost 6 years ago
10.3390/s19092079
Low-Cost Image Compressive Sensing with Multiple Measurement Rates for Object DetectionCited by: 5
Author(s): Longlong Liao, Kenli Li, Chi Yang, Jie Liu
Software Mentions: 1
Published: over 5 years ago
10.3390/s19235142
Spatio-Temporal Attention Model for Foreground Detection in Cross-Scene Surveillance VideosCited by: 13
Author(s): Dong Liang, Jiaxing Pan, Han Sun, Huiyu Zhou
Software Mentions: 1
Published: almost 5 years ago
10.3390/s20236973
TensorMoG: A Tensor-Driven Gaussian Mixture Model with Dynamic Scene Adaptation for Background ModellingCited by: 5
Author(s): Synh Viet-Uyen Ha, Nhat Minh Chung, Hung Ngoc Phan, Cuong Tien Nguyen
Software Mentions: 1
Published: almost 4 years ago
10.3390/s21030689
A CNN-Based Length-Aware Cascade Road Damage Detection ApproachCited by: 5
Author(s): Huiqing Xu, Bin Chen, Jian Qin
Software Mentions: 1
Published: almost 4 years ago
10.3390/s21051672
RatioNet: Ratio Prediction Network for Object DetectionCited by: 0
Author(s): Kuan Zhao, Boxuan Simen Zhao, Lifang Wu, Meng Jian, Lingfeng Xu
Software Mentions: 1
Published: over 3 years ago
10.3390/s21051820
Multi-Scale Feature Pyramid Network: A Heavily Occluded Pedestrian Detection Network Based on ResNetCited by: 6
Author(s): Xiaotao Shao, Qing Wang, Wei Yang, Yun Chen, Yi Xie, Yan Shen, Zhongli Wang
Software Mentions: 1
Published: over 3 years ago
10.3390/s21082824
Drone vs. Bird Detection: Deep Learning Algorithms and Results from a Grand ChallengeCited by: 43
Author(s): Angelo Coluccia, Alessio Fascista, Arne Schumann, Lars Sommer, Anastasios Dimou, Dimitrios Zarpalas, Miguel A. Olivares-Méndez, David de la Iglesia, Izamar Gonzalez, Jean-Philippe Mercier, Guillaume Gagné, Arka Mitra, Shobha Rajashekar
Software Mentions: 1
Published: over 3 years ago
10.3390/s21093102
Mixed Assessment of Virtual Serious Games Applied in Architectural and Urban Design EducationCited by: 22
Author(s): David Fonseca, Janaina Ferreira Cavalcanti, Enric Peña, Victor Valls, Mónica V. Sánchez-Sepúlveda, Fernando Moreira, Isidro Navarro, Ernest Redondo
Software Mentions: 1
Published: over 3 years ago
10.3390/s21144663
Gamification and Hazard Communication in Virtual Reality: A Qualitative StudyCited by: 17
Author(s): Janaina Ferreira Cavalcanti, Victor Valls, Manuel Contero, David Fonseca
Software Mentions: 1
Published: over 3 years ago
10.1186/s13063-015-0681-6
Online parent-targeted cognitive-behavioural therapy intervention to improve quality of life in families of young cancer survivors: study protocol for a randomised controlled trialCited by: 28
Author(s): Claire E. Wakefield, Ursula M Sansom-Daly, Brittany C. McGill, Maria McCarthy, Afaf Girgis, Martha A. Grootenhuis, Belinda Barton, Pandora Patterson, Michael Osborn, Cherie Lowe, Antoinette Anazodo, Gordon Miles, Richard J. Cohn
Software Mentions: 1
Published: over 9 years ago
10.1128/mBio.01751-17
Disabling a Type I-E CRISPR-Cas Nuclease with a Bacteriophage-Encoded Anti-CRISPR ProteinCited by: 59
Author(s): April Pawluk, Megha Shah, Marios Mejdani, Charles Calmettes, Trevor F. Moraes, Alan R. Davidson, Karen L. Maxwell
Software Mentions: 1
Published: almost 7 years ago
10.1128/mBio.02100-17
Determining the Specificity of Cascade Binding, Interference, and Primed Adaptation <i>In Vivo</i> in the <i>Escherichia coli</i> Type I-E CRISPR-Cas SystemCited by: 25
Author(s): Lauren Cooper, Anne M. Stringer, Joseph T. Wade
Software Mentions: 1
Published: over 6 years ago
10.15171/ijb.1308
Gene Regulation Network Based Analysis Associated with TGF-beta Stimulation in Lung Adenocarcinoma CellsCited by: 0
Author(s): Lin Hua, Hong Xia, Weiying Zheng, Li An
Software Mentions: 1
Published: over 7 years ago
10.7554/eLife.58182
Transcription termination and antitermination of bacterial CRISPR arraysCited by: 5
Author(s): Anne M. Stringer, Gabriele Baniulyte, Erica Lasek‐Nesselquist, Kimberley D. Seed, Joseph T. Wade
Software Mentions: 1
Published: about 4 years ago
10.3390/ijms140714518
Exploiting CRISPR/Cas: Interference Mechanisms and ApplicationsCited by: 35
Author(s): Hagen Richter, Lennart Randau, André Plagens
Software Mentions: 1
Published: over 11 years ago
10.1186/s12859-019-3326-z
ZDOG: zooming in on dominating genes with mutations in cancer pathwaysCited by: 1
Author(s): Rudi Alberts, Jinyu Chen, Louxin Zhang
Software Mentions: 1
Published: almost 5 years ago
10.17756/jrds.2015-008
The Molecular Neurobiology of Twelve Steps Program & Fellowship: Connecting the Dots for RecoveryCited by: 67
Author(s): Kenneth Blum, Benjamin P. Thompson, Zsolt Demotrovics, John Femino, John Giordano, Marlene Oscar‐Berman, Scott Teitelbaum, David Eugene Smith, Arunima Roy, Gozde Agan, James Fratantonio, Rajendra D. Badgaiyan, Mark S. Gold
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12915-020-00799-z
DNA interference is controlled by R-loop length in a type I-F1 CRISPR-Cas systemCited by: 15
Author(s): Donata Tuminauskaite, Danguole Norkunaite, Marija Fiodorovaite, Sarunas Tumas, Inga Songailienė, G. Tamulaitiene, Tomas Šinkūnas
Software Mentions: 1
Published: over 4 years ago
10.1186/s12866-016-0643-5
Cas3 is a limiting factor for CRISPR-Cas immunity in Escherichia coli cells lacking H-NSCited by: 29
Author(s): Kristina Majsec, Edward L. Bolt, Ivana Ivančić-Baće
Software Mentions: 1
Published: over 8 years ago
10.1042/BJ20130316
CRISPR interference: a structural perspectiveCited by: 110
Author(s): Judith Reeks, James H. Naismith, Malcolm F. White
Software Mentions: 1
Published: over 11 years ago
10.1042/BSR20180457
CRISPR-Cas immunity, DNA repair and genome stabilityCited by: 26
Author(s): Andrew Cubbon, Ivana Ivančić-Baće, Edward L. Bolt
Software Mentions: 1
Published: about 6 years ago
10.1042/BSR20150043
The role of Cas8 in type I CRISPR interferenceCited by: 36
Author(s): Simon Cass, Karina A. Haas, Britta Stoll, Omer S. Alkhnbashi, K. C. Sharma, Henning Urlaub, Rolf Backofen, Anita Marchfelder, Edward L. Bolt
Software Mentions: 1
Published: over 9 years ago
10.1007/s10518-021-01117-w
The Mw5.4 Zagreb (Croatia) earthquake of March 22, 2020: impacts and responseCited by: 26
Author(s): Josip Atalić, Mario Uroš, Marta Šavor Novak, Marija Demšić, Miroslav Nastev
Software Mentions: 1
Published: over 3 years ago
10.3390/v10060335
Phage Genetic Engineering Using CRISPR–Cas SystemsCited by: 44
Author(s): Asma Hatoum-Aslan
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pgen.1003742
Type I-E CRISPR-Cas Systems Discriminate Target from Non-Target DNA through Base Pairing-Independent PAM RecognitionCited by: 182
Author(s): Edze R. Westra, Ekaterina Semenova, Kirill A. Datsenko, Ryan N. Jackson, Blake Wiedenheft, Konstantin Severinov, Stan J. J. Brouns
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0217647
A novel YOLOv3-arch model for identifying cholelithiasis and classifying gallstones on CT imagesCited by: 51
Author(s): Shanchen Pang, Tonghai Ding, Sibo Qiao, Meng Fan, Shuo Wang, Pibao Li, Xun Wang
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0210375
Symptoms of fatigue and depression is reflected in altered default mode network connectivity in multiple sclerosisCited by: 19
Author(s): Einar August Høgestøl, Gro Owren Nygaard, Dag Alnæs, Mona K. Beyer, Lars T. Westlye, Hanne F. Harbo
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0028793
Identifying HER2 Inhibitors from Natural Products DatabaseCited by: 36
Author(s): Shun-Chieh Yang, Su-Sen Chang, Calvin Yu-Chian Chen
Software Mentions: 1
Published: almost 13 years ago
10.1038/s42003-019-0637-6
The repurposing of type I-E CRISPR-Cascade for gene activation in plantsCited by: 43
Author(s): Joshua K. Young, Stephen L. Gasior, Spencer Jones, Limin Wang, Pedro J. Navarro, Becca Vickroy, Rodolphe Barrangou
Software Mentions: 1
Published: about 5 years ago
10.1155/2021/9963322
Hybrid Pyramid Convolutional Network for Multiscale Face DetectionCited by: 2
Author(s): Shaoqi Hou, Dongdong Fang, Yixi Pan, Ye Li, Yin Guo
Software Mentions: 1
Published: over 3 years ago
10.3390/e21070688
A Hybrid Information Reconciliation Method for Physical Layer Key GenerationCited by: 16
Author(s): Guyue Li, Zheying Zhang, Yi Yu, Aiqun Hu
Software Mentions: 1
Published: over 5 years ago
10.1140/epjc/s10052-018-5634-2
TMD splitting functions in $$k_T$$ k T factorization: the real contribution to the gluon-to-gluon splittingCited by: 23
Author(s): Martin Hentschinski, A. Kusina, Krzysztof Kutak, M. Serino
Software Mentions: 1
Published: over 6 years ago
10.1093/femsre/fuv019
DNA and RNA interference mechanisms by CRISPR-Cas surveillance complexesCited by: 93
Author(s): André Plagens, Hagen Richter, Emmanuelle Charpentier, Lennart Randau
Software Mentions: 1
Published: over 9 years ago
10.3389/fbioe.2020.00062
Endogenous Type I CRISPR-Cas: From Foreign DNA Defense to Prokaryotic EngineeringCited by: 54
Author(s): Yanli Zheng, Jie Li, Baiyang Wang, Jiamei Han, Yile Hao, Shengchen Wang, Xinrong Ma, Shihui Yang, Lixin Ma, Yang Li, Wenfang Peng
Software Mentions: 1
Published: over 4 years ago