cran: Cascade | Projects | Ecosyste.ms: Papers

10.3389/fneur.2020.546744

LesionQuant for Assessment of MRI in Multiple Sclerosis—A Promising Supplement to the Visual Scan Inspection
Cited by: 7
Author(s): Synne Brune, Einar August Høgestøl, Vanja Cengija, Pål Berg‐Hansen, Piotr Sowa, Gro Owren Nygaard, Hanne F. Harbo, Mona K. Beyer
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0218264

Predicting biomedical relationships using the knowledge and graph embedding cascade model
Cited by: 18
Author(s): Xiaomin Liang, Daifeng Li, Min Song, Andrew D. Madden, Ying Ding, Yi Bu
Software Mentions: 5
Published: over 5 years ago

10.3390/s21144837

Optimally-Weighted Image-Pose Approach (OWIPA) for Distracted Driver Detection and Classification
Cited by: 10
Author(s): Hong Vin Koay, Joon Huang Chuah, Chee-Onn Chow, Yang-Lang Chang, Bhuvendhraa Rudrusamy
Software Mentions: 4
Published: over 3 years ago

10.3389/fneur.2019.00450

Cross-Sectional and Longitudinal MRI Brain Scans Reveal Accelerated Brain Aging in Multiple Sclerosis
Cited by: 61
Author(s): Einar August Høgestøl, Tobias Kaufmann, Gro Owren Nygaard, Mona K. Beyer, Piotr Sowa, Jan Egil Nordvik, Knut-Kristian Kolskår, Geneviève Richard, Ole A. Andreassen, Hanne F. Harbo, Lars T. Westlye
Software Mentions: 4
Published: over 5 years ago

10.1186/s13321-020-0411-2

3DStructGen: an interactive web-based 3D structure generation for non-periodic molecule and crystal
Cited by: 3
Author(s): Pin Chen, Yu Wang, Hui Yan, Sen Gao, Zexin Xu, Yangzhong Li, Qing Mo, Junkang Huang, Jun Tao, GeChuanqi Pan, Jiahui Li, Yunfei Du
Software Mentions: 3
Published: almost 5 years ago

10.3390/s16030279

Device Data Ingestion for Industrial Big Data Platforms with a Case Study
Cited by: 35
Author(s): Cun Ji, Qingshi Shao, Jiao Sun, Shijun Liu, Li Pan, Lei Wu, Chenglei Yang
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0056449

Improved Detection of Remote Homologues Using Cascade PSI-BLAST: Influence of Neighbouring Protein Families on Sequence Coverage
Cited by: 10
Author(s): Sushmita Kaushik, Eshita Mutt, Ajithavalli Chellappan, Sankaran Sandhya, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
Software Mentions: 3
Published: almost 12 years ago

10.1186/s12864-016-2389-8

Cascade: an RNA-seq visualization tool for cancer genomics
Cited by: 2
Author(s): Aaron R. Shifman, Radia Marie Johnson, Brian T. Wilhelm
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0105716

DNA Binding Properties of the Small Cascade Subunit Csa5
Cited by: 11
Author(s): Michael Daume, André Plagens, Lennart Randau
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0035888

CRISPR Interference Directs Strand Specific Spacer Acquisition
Cited by: 338
Author(s): Daan C. Swarts, Cas Mosterd, Mark W. J. van Passel, Stan J. J. Brouns
Software Mentions: 2
Published: over 12 years ago

10.1140/epjc/s10052-018-5642-2

Calculations with off-shell matrix elements, TMD parton densities and TMD parton showers
Cited by: 20
Author(s): Marcin Bury, A. van Hameren, H. Jung, Krzysztof Kutak, Sebastian Sapeta, M. Serino
Software Mentions: 2
Published: almost 7 years ago

10.1155/2014/284827

Real-Time Depth-Based Hand Detection and Tracking
Cited by: 14
Author(s): Sung-Il Joo, Sun-Hee Weon, Hyung-Il Choi
Software Mentions: 2
Published: almost 11 years ago

10.1002/jgrd.50402

The role of deep convection and nocturnal low‐level jets for dust emission in summertime West Africa: Estimates from convection‐permitting simulations
Cited by: 128
Author(s): Bernd Heinold, Peter Knippertz, John H. Marsham, Stephanie Fiedler, Nick Dixon, Kerstin Schepanski, L. Bouchet, Ina Tegen
Software Mentions: 2
Published: over 11 years ago

10.3390/healthcare9010054

TMD-Unet: Triple-Unet with Multi-Scale Input Features and Dense Skip Connection for Medical Image Segmentation
Cited by: 35
Author(s): Song-Toan Tran, Ching-Hwa Cheng, Thanh-Tuan Nguyen, Minh-Hai Le, Don‐Gey Liu
Software Mentions: 2
Published: almost 4 years ago

10.3390/s21041033

Deep Learning Approaches on Defect Detection in High Resolution Aerial Images of Insulators
Cited by: 44
Author(s): Qiaodi Wen, Ziqi Luo, Ruitao Chen, Yifan Yang, Guofa Li
Software Mentions: 2
Published: almost 4 years ago

10.1029/2017MS001189

Forcing Single-Column Models Using High-Resolution Model Simulations
Cited by: 8
Author(s): Hilary Christensen, Andrew Dawson, Christopher E. Holloway
Software Mentions: 2
Published: over 6 years ago

10.3390/s21082587

3D Face Point Cloud Reconstruction and Recognition Using Depth Sensor
Cited by: 9
Author(s): Cheng Wei Wang, Chao-Chung Peng
Software Mentions: 2
Published: over 3 years ago

10.1186/1745-6150-6-38

Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
Cited by: 380
Author(s): Kira S. Makarova, L. Aravind, Yuri I. Wolf, Eugene V. Koonin
Software Mentions: 2
Published: over 13 years ago

10.3389/fgene.2018.00240

CRISPR/Cascade 9-Mediated Genome Editing-Challenges and Opportunities
Cited by: 41
Author(s): Bhaskar Roy, Jing Zhao, Chao Yang, Wen Luo, Tengfei Xiong, Yong Li, Xiaodong Fang, Guanjun Gao, Chabungbam Orville Singh, Lise Madsen, Yong Zhou, Karsten Kristiansen
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2017.00652

H-NS Mutation-Mediated CRISPR-Cas Activation Inhibits Phage Release and Toxin Production of Escherichia coli Stx2 Phage Lysogen
Cited by: 9
Author(s): Qiang Fu, Shiyu Li, Zhaofei Wang, Wenya Shan, Jingjiao Ma, Yuqiang Cheng, Hengan Wang, Yaxian Yan, Jianhe Sun
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2017.00319

Commentary: Type I CRISPR-Cas targets endogenous genes and regulates virulence to evade mammalian host immunity
Cited by: 11
Author(s): Hanna Müller-Esparza, Lennart Randau
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmolb.2016.00045

The Influence of Copy-Number of Targeted Extrachromosomal Genetic Elements on the Outcome of CRISPR-Cas Defense
Cited by: 23
Author(s): Konstantin Severinov, Iaroslav Ispolatov, Ekaterina Semenova
Software Mentions: 1
Published: over 8 years ago

10.3390/genes11020208

Cas3 Protein—A Review of a Multi-Tasking Machine
Cited by: 20
Author(s): He Liu, Michael St. John James, Marin Radovčić, Ivana Ivančić-Baće, Edward L. Bolt
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13059-015-0816-9

Diversity of CRISPR-Cas immune systems and molecular machines
Cited by: 67
Author(s): Rodolphe Barrangou
Software Mentions: 1
Published: about 9 years ago

10.1074/jbc.M116.724062

Gene Repression in Haloarchaea Using the CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)-Cas I-B System
Cited by: 61
Author(s): Aris-Edda Stachler, Anita Marchfelder
Software Mentions: 1
Published: over 8 years ago

10.1186/1758-2946-4-7

CheS-Mapper - Chemical Space Mapping and Visualization in 3D
Cited by: 47
Author(s): Martin Gütlein, Andreas Karwath, Stefan Krämer
Software Mentions: 1
Published: almost 13 years ago

10.1080/15476286.2018.1496773

DNA replication roadblocks caused by Cascade interference complexes are alleviated by RecG DNA repair helicase
Cited by: 13
Author(s): Tom Killelea, Michelle Hawkins, Jamieson A. L. Howard, Peter McGlynn, Edward L. Bolt
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-52548-0

Disentangling photoperiod from hop vernalization and dormancy for global production and speed breeding
Cited by: 19
Author(s): William L. Bauerle
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-52966-0

Performance of five automated white matter hyperintensity segmentation methods in a multicenter dataset
Cited by: 35
Author(s): Rutger Heinen, Martijn D. Steenwijk, Frederik Barkhof, J. Matthijs Biesbroek, Wiesje M. van der Flier, Hugo J. Kuijf, Niels D. Prins, Hugo Vrenken, Geert Jan Biessels, Jeroen de Bresser
Software Mentions: 1
Published: about 5 years ago

10.3390/s18124269

Foreground Detection with Deeply Learned Multi-Scale Spatial-Temporal Features
Cited by: 17
Author(s): Yao Wang, Zhiwu Yu, Liqiang Zhu
Software Mentions: 1
Published: about 6 years ago

10.3390/s19092079

Low-Cost Image Compressive Sensing with Multiple Measurement Rates for Object Detection
Cited by: 5
Author(s): Longlong Liao, Kenli Li, Chi Yang, Jie Liu
Software Mentions: 1
Published: over 5 years ago

10.3390/s19235142

Spatio-Temporal Attention Model for Foreground Detection in Cross-Scene Surveillance Videos
Cited by: 13
Author(s): Dong Liang, Jiaxing Pan, Han Sun, Huiyu Zhou
Software Mentions: 1
Published: about 5 years ago

10.3390/s20236973

TensorMoG: A Tensor-Driven Gaussian Mixture Model with Dynamic Scene Adaptation for Background Modelling
Cited by: 5
Author(s): Synh Viet-Uyen Ha, Nhat Minh Chung, Hung Ngoc Phan, Cuong Tien Nguyen
Software Mentions: 1
Published: about 4 years ago

10.3390/s21030689

A CNN-Based Length-Aware Cascade Road Damage Detection Approach
Cited by: 5
Author(s): Huiqing Xu, Bin Chen, Jian Qin
Software Mentions: 1
Published: almost 4 years ago

10.3390/s21051672

RatioNet: Ratio Prediction Network for Object Detection
Cited by: 0
Author(s): Kuan Zhao, Boxuan Simen Zhao, Lifang Wu, Meng Jian, Lingfeng Xu
Software Mentions: 1
Published: almost 4 years ago

10.3390/s21051820

Multi-Scale Feature Pyramid Network: A Heavily Occluded Pedestrian Detection Network Based on ResNet
Cited by: 6
Author(s): Xiaotao Shao, Qing Wang, Wei Yang, Yun Chen, Yi Xie, Yan Shen, Zhongli Wang
Software Mentions: 1
Published: almost 4 years ago

10.3390/s21082824

Drone vs. Bird Detection: Deep Learning Algorithms and Results from a Grand Challenge
Cited by: 43
Author(s): Angelo Coluccia, Alessio Fascista, Arne Schumann, Lars Sommer, Anastasios Dimou, Dimitrios Zarpalas, Miguel A. Olivares-Méndez, David de la Iglesia, Izamar Gonzalez, Jean-Philippe Mercier, Guillaume Gagné, Arka Mitra, Shobha Rajashekar
Software Mentions: 1
Published: over 3 years ago

10.3390/s21093102

Mixed Assessment of Virtual Serious Games Applied in Architectural and Urban Design Education
Cited by: 22
Author(s): David Fonseca, Janaina Ferreira Cavalcanti, Enric Peña, Victor Valls, Mónica V. Sánchez-Sepúlveda, Fernando Moreira, Isidro Navarro, Ernest Redondo
Software Mentions: 1
Published: over 3 years ago

10.3390/s21144663

Gamification and Hazard Communication in Virtual Reality: A Qualitative Study
Cited by: 17
Author(s): Janaina Ferreira Cavalcanti, Victor Valls, Manuel Contero, David Fonseca
Software Mentions: 1
Published: over 3 years ago

10.1186/s13063-015-0681-6

Online parent-targeted cognitive-behavioural therapy intervention to improve quality of life in families of young cancer survivors: study protocol for a randomised controlled trial
Cited by: 28
Author(s): Claire E. Wakefield, Ursula M Sansom-Daly, Brittany C. McGill, Maria McCarthy, Afaf Girgis, Martha A. Grootenhuis, Belinda Barton, Pandora Patterson, Michael Osborn, Cherie Lowe, Antoinette Anazodo, Gordon Miles, Richard J. Cohn
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.01751-17

Disabling a Type I-E CRISPR-Cas Nuclease with a Bacteriophage-Encoded Anti-CRISPR Protein
Cited by: 59
Author(s): April Pawluk, Megha Shah, Marios Mejdani, Charles Calmettes, Trevor F. Moraes, Alan R. Davidson, Karen L. Maxwell
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.02100-17

Determining the Specificity of Cascade Binding, Interference, and Primed Adaptation <i>In Vivo</i> in the <i>Escherichia coli</i> Type I-E CRISPR-Cas System
Cited by: 25
Author(s): Lauren Cooper, Anne M. Stringer, Joseph T. Wade
Software Mentions: 1
Published: over 6 years ago

10.15171/ijb.1308

Gene Regulation Network Based Analysis Associated with TGF-beta Stimulation in Lung Adenocarcinoma Cells
Cited by: 0
Author(s): Lin Hua, Hong Xia, Weiying Zheng, Li An
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.58182

Transcription termination and antitermination of bacterial CRISPR arrays
Cited by: 5
Author(s): Anne M. Stringer, Gabriele Baniulyte, Erica Lasek‐Nesselquist, Kimberley D. Seed, Joseph T. Wade
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms140714518

Exploiting CRISPR/Cas: Interference Mechanisms and Applications
Cited by: 35
Author(s): Hagen Richter, Lennart Randau, André Plagens
Software Mentions: 1
Published: over 11 years ago

10.1186/s12859-019-3326-z

ZDOG: zooming in on dominating genes with mutations in cancer pathways
Cited by: 1
Author(s): Rudi Alberts, Jinyu Chen, Louxin Zhang
Software Mentions: 1
Published: about 5 years ago

10.17756/jrds.2015-008

The Molecular Neurobiology of Twelve Steps Program & Fellowship: Connecting the Dots for Recovery
Cited by: 67
Author(s): Kenneth Blum, Benjamin P. Thompson, Zsolt Demotrovics, John Femino, John Giordano, Marlene Oscar‐Berman, Scott Teitelbaum, David Eugene Smith, Arunima Roy, Gozde Agan, James Fratantonio, Rajendra D. Badgaiyan, Mark S. Gold
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12915-020-00799-z

DNA interference is controlled by R-loop length in a type I-F1 CRISPR-Cas system
Cited by: 15
Author(s): Donata Tuminauskaite, Danguole Norkunaite, Marija Fiodorovaite, Sarunas Tumas, Inga Songailienė, G. Tamulaitiene, Tomas Šinkūnas
Software Mentions: 1
Published: over 4 years ago

10.1186/s12866-016-0643-5

Cas3 is a limiting factor for CRISPR-Cas immunity in Escherichia coli cells lacking H-NS
Cited by: 29
Author(s): Kristina Majsec, Edward L. Bolt, Ivana Ivančić-Baće
Software Mentions: 1
Published: almost 9 years ago

10.1042/BJ20130316

CRISPR interference: a structural perspective
Cited by: 110
Author(s): Judith Reeks, James H. Naismith, Malcolm F. White
Software Mentions: 1
Published: over 11 years ago

10.1042/BSR20180457

CRISPR-Cas immunity, DNA repair and genome stability
Cited by: 26
Author(s): Andrew Cubbon, Ivana Ivančić-Baće, Edward L. Bolt
Software Mentions: 1
Published: over 6 years ago

10.1042/BSR20150043

The role of Cas8 in type I CRISPR interference
Cited by: 36
Author(s): Simon Cass, Karina A. Haas, Britta Stoll, Omer S. Alkhnbashi, K. C. Sharma, Henning Urlaub, Rolf Backofen, Anita Marchfelder, Edward L. Bolt
Software Mentions: 1
Published: over 9 years ago

10.1007/s10518-021-01117-w

The Mw5.4 Zagreb (Croatia) earthquake of March 22, 2020: impacts and response
Cited by: 26
Author(s): Josip Atalić, Mario Uroš, Marta Šavor Novak, Marija Demšić, Miroslav Nastev
Software Mentions: 1
Published: over 3 years ago

10.3390/v10060335

Phage Genetic Engineering Using CRISPR–Cas Systems
Cited by: 44
Author(s): Asma Hatoum-Aslan
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1003742

Type I-E CRISPR-Cas Systems Discriminate Target from Non-Target DNA through Base Pairing-Independent PAM Recognition
Cited by: 182
Author(s): Edze R. Westra, Ekaterina Semenova, Kirill A. Datsenko, Ryan N. Jackson, Blake Wiedenheft, Konstantin Severinov, Stan J. J. Brouns
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0217647

A novel YOLOv3-arch model for identifying cholelithiasis and classifying gallstones on CT images
Cited by: 51
Author(s): Shanchen Pang, Tonghai Ding, Sibo Qiao, Meng Fan, Shuo Wang, Pibao Li, Xun Wang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0210375

Symptoms of fatigue and depression is reflected in altered default mode network connectivity in multiple sclerosis
Cited by: 19
Author(s): Einar August Høgestøl, Gro Owren Nygaard, Dag Alnæs, Mona K. Beyer, Lars T. Westlye, Hanne F. Harbo
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0028793

Identifying HER2 Inhibitors from Natural Products Database
Cited by: 36
Author(s): Shun-Chieh Yang, Su-Sen Chang, Calvin Yu-Chian Chen
Software Mentions: 1
Published: about 13 years ago

10.1038/s42003-019-0637-6

The repurposing of type I-E CRISPR-Cascade for gene activation in plants
Cited by: 43
Author(s): Joshua K. Young, Stephen L. Gasior, Spencer Jones, Limin Wang, Pedro J. Navarro, Becca Vickroy, Rodolphe Barrangou
Software Mentions: 1
Published: about 5 years ago

10.1155/2021/9963322

Hybrid Pyramid Convolutional Network for Multiscale Face Detection
Cited by: 2
Author(s): Shaoqi Hou, Dongdong Fang, Yixi Pan, Ye Li, Yin Guo
Software Mentions: 1
Published: over 3 years ago

10.3390/e21070688

A Hybrid Information Reconciliation Method for Physical Layer Key Generation
Cited by: 16
Author(s): Guyue Li, Zheying Zhang, Yi Yu, Aiqun Hu
Software Mentions: 1
Published: over 5 years ago

10.1140/epjc/s10052-018-5634-2

TMD splitting functions in $$k_T$$ k T factorization: the real contribution to the gluon-to-gluon splitting
Cited by: 23
Author(s): Martin Hentschinski, A. Kusina, Krzysztof Kutak, M. Serino
Software Mentions: 1
Published: almost 7 years ago

10.1093/femsre/fuv019

DNA and RNA interference mechanisms by CRISPR-Cas surveillance complexes
Cited by: 93
Author(s): André Plagens, Hagen Richter, Emmanuelle Charpentier, Lennart Randau
Software Mentions: 1
Published: over 9 years ago

10.3389/fbioe.2020.00062

Endogenous Type I CRISPR-Cas: From Foreign DNA Defense to Prokaryotic Engineering
Cited by: 54
Author(s): Yanli Zheng, Jie Li, Baiyang Wang, Jiamei Han, Yile Hao, Shengchen Wang, Xinrong Ma, Shihui Yang, Lixin Ma, Yang Li, Wenfang Peng
Software Mentions: 1
Published: almost 5 years ago

Projects: cran: Cascade

Papers Mentioning Cascade 64